mRNA_H-elongata_contig85636.16148.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85636.16148.1
Unique NamemRNA_H-elongata_contig85636.16148.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig85636.16148.1 vs. uniprot
Match: A0A6H5L805_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L805_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 8.950e-64
Identity = 97/120 (80.83%), Postives = 110/120 (91.67%), Query Frame = 1 
Query:    1 QVRQNEAHRMLFQCEPGKHKDHIRIRSRATNTFLFFLGVKHPLTWVAWDRDVVGGDWEDLQLEWVGTPAGREGVLVGDERGRVVIHSRPMKAYVSWNGTRFTHVPNKEGATVFLFQRVAP 360
            +V+QNEAHRMLFQ E G+H+DH+RIRSRATNTFLFFLG+K PLTWVAWDRDVVGG+WEDL+LEWVG P G +GVLVGDERGRVVI SRPMK YVSWNG+RFTHVP +EGATVF+ QR+AP
Sbjct:  615 EVKQNEAHRMLFQAENGRHRDHVRIRSRATNTFLFFLGIKQPLTWVAWDRDVVGGEWEDLKLEWVGKPQGPDGVLVGDERGRVVIRSRPMKGYVSWNGSRFTHVPGREGATVFMLQRMAP 734
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BLAST of mRNA_H-elongata_contig85636.16148.1 vs. uniprot
Match: A0A835YVS8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVS8_9STRA)

HSP 1 Score: 123 bits (309), Expect = 8.480e-30
Identity = 52/112 (46.43%), Postives = 76/112 (67.86%), Query Frame = 1 
Query:   13 NEAHRMLFQCEPGKHKDHIRIRSRATNTFLFFLGVKHPLTWVAWDRDVVGGDWEDLQLEWVGTPAGREGVLVGDERGRVVIHSRPMKAYVSWNGTRFTHVPNKEGATVFLFQ 348
            ++AHR++FQCEPG+   H+RIRSR +NT+LF LG++ PLT VAWDR+V GGDWED+++ W+            ++ GRV+I  +    Y+ W GT+F H P K+ A+ F+ Q
Sbjct:  496 HDAHRLVFQCEPGRAAGHVRIRSRGSNTYLFMLGLRRPLTLVAWDREVAGGDWEDMRIVWLPR---------AEDEGRVLIRCKTAGGYLQWTGTKFVHTPVKDSASRFMLQ 598
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BLAST of mRNA_H-elongata_contig85636.16148.1 vs. uniprot
Match: A0A835ZHV2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHV2_9STRA)

HSP 1 Score: 112 bits (280), Expect = 5.620e-26
Identity = 52/114 (45.61%), Postives = 71/114 (62.28%), Query Frame = 1 
Query:   13 NEAHRMLFQCEPGKHKDHIRIRSRATNTFLFFLGVKHPLTWVAWDRDVVGGDWEDLQLEWVGTPAGREGVLVGDERGRVVIHSRPMKAYVSWNGTRFTHVPNKEGATVFLFQRV 354
            ++A+RMLFQCEPG+   H+ +RSR TNT LF LG++ P T VAWDR+V GGDWED+++EW             +  G VVI  +    Y+ W G RF HV  ++ A+ F+ Q V
Sbjct:  410 HDANRMLFQCEPGRASGHVWLRSRGTNTLLFMLGLRKPRTLVAWDREVPGGDWEDMRIEWC-----------PEHNGHVVISCKRAGGYLQWTGDRFGHVDERDCASRFMLQGV 512
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BLAST of mRNA_H-elongata_contig85636.16148.1 vs. uniprot
Match: D8LSC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC8_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 6.950e-16
Identity = 36/46 (78.26%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 QVRQNEAHRMLFQCEPGKHKDHIRIRSRATNTFLFFLGVKHPLTWV 138
            +V+QNEAHRMLFQ E G+H+ H+RIRSRATNTFLFFLG+K PLTWV
Sbjct:  414 EVKQNEAHRMLFQAENGRHRGHVRIRSRATNTFLFFLGIKQPLTWV 459
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85636.16148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L805_9PHAE8.950e-6480.83Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A835YVS8_9STRA8.480e-3046.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZHV2_9STRA5.620e-2645.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LSC8_ECTSI6.950e-1678.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85636contigH-elongata_contig85636:142..1111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size489
Cds size462
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85636.16148.1prot_H-elongata_contig85636.16148.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85636 169..1111 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931259.326637-UTR-H-elongata_contig85636:141..1681622931259.326637-UTR-H-elongata_contig85636:141..168Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig85636 142..168 +
1691679763.244863-UTR-H-elongata_contig85636:141..1681691679763.244863-UTR-H-elongata_contig85636:141..168Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig85636 142..168 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931259.3392816-CDS-H-elongata_contig85636:168..2791622931259.3392816-CDS-H-elongata_contig85636:168..279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85636 169..279 +
1691679763.2537503-CDS-H-elongata_contig85636:168..2791691679763.2537503-CDS-H-elongata_contig85636:168..279Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85636 169..279 +
1622931259.3542366-CDS-H-elongata_contig85636:760..11111622931259.3542366-CDS-H-elongata_contig85636:760..1111Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85636 761..1111 +
1691679763.270481-CDS-H-elongata_contig85636:760..11111691679763.270481-CDS-H-elongata_contig85636:760..1111Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85636 761..1111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85636.16148.1

>prot_H-elongata_contig85636.16148.1 ID=prot_H-elongata_contig85636.16148.1|Name=mRNA_H-elongata_contig85636.16148.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp
MLFQCEPGKHKDHIRIRSRATNTFLFFLGVKHPLTWVAWDRDVVGGDWED
LQLEWVGTPAGREGVLVGDERGRVVIHSRPMKAYVSWNGTRFTHVPNKEG
ATVFLFQRVAPHPATSTGSSTSRLERRRRDESGGKEGVGREGSASGGTFG
GAG*
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mRNA from alignment at H-elongata_contig85636:142..1111+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85636.16148.1 ID=mRNA_H-elongata_contig85636.16148.1|Name=mRNA_H-elongata_contig85636.16148.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=970bp|location=Sequence derived from alignment at H-elongata_contig85636:142..1111+ (Himanthalia elongata Himel1 dioecious)
CAGGTGAGGCAGAACGAGGCCCATCGCATGCTTTTTCAGTGCGAGCCGGG
AAAGCACAAGGATCACATTCGAATACGCTCCAGAGCCACCAACACCTTCC
TATTCTTCCTAGGAGTCAAACATCCACTGACATGGGTGGTGAGAGCGCCA
ACTGGAGAAGGGGTGTAGAGTTCCATCGACTGTTTTTCGTATCAAGTGCA
TGTTTTTTTCCTGACTTTTTCAGCCATATTCTCTTGTGTTATGTATTACT
CGTTATTTGTTTTACAGTACAGTATGTGTACCCGGGTGTCTTTGTAGTAT
TATGGATGACGTATGACAAATGACGTACCCATGGAGAGGCGTGTAGACTT
ACGAGCTGCAAAACAAAATTAATTCGGAGGGCGCTCGAGAGTGGACAAAG
GACAGTGAACAGAAGCAATGCCCGCAAGGATAGTTGGTCTCCTGGATTGC
ACCTCTTACGGCGCTAAGAAGGTGTGGATGTTCGGAGGGTTGGAATAAGT
TCAAGGTTTTTTAGTATAAATAACCCGCGAAAGTCAGCGTATTGTCGGCC
CACACCCTGAACGATCCCAGCGGTATTTTCCGTGCTTCCCCCCTCCCCAA
ACCCGCTATTGATTTTAAGGCTTGGGATCGCGACGTGGTCGGAGGCGACT
GGGAGGATCTGCAGCTGGAGTGGGTTGGAACTCCCGCCGGCCGCGAAGGC
GTTCTGGTCGGGGACGAGCGGGGACGGGTGGTCATTCACAGCCGTCCGAT
GAAAGCTTACGTGTCGTGGAACGGTACACGCTTCACACACGTTCCGAACA
AAGAGGGCGCGACTGTGTTCCTGTTCCAGCGTGTTGCCCCCCATCCCGCG
ACCTCAACCGGTTCTTCGACGTCGAGGCTGGAACGACGCCGAAGGGACGA
AAGTGGGGGCAAGGAAGGCGTGGGCCGAGAAGGTTCGGCGTCTGGCGGGA
CGTTCGGCGGCGCCGGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig85636:142..1111+

>mRNA_H-elongata_contig85636.16148.1 ID=mRNA_H-elongata_contig85636.16148.1|Name=mRNA_H-elongata_contig85636.16148.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at H-elongata_contig85636:142..1111+ (Himanthalia elongata Himel1 dioecious)
ATGCTTTTTCAGTGCGAGCCGGGAAAGCACAAGGATCACATTCGAATACG
CTCCAGAGCCACCAACACCTTCCTATTCTTCCTAGGAGTCAAACATCCAC
TGACATGGGTGATGCTTTTTCAGTGCGAGCCGGGAAAGCACAAGGATCAC
ATTCGAATACGCTCCAGAGCCACCAACACCTTCCTATTCTTCCTAGGAGT
CAAACATCCACTGACATGGGTGGCTTGGGATCGCGACGTGGTCGGAGGCG
ACTGGGAGGATCTGCAGCTGGAGTGGGTTGGAACTCCCGCCGGCCGCGAA
GGCGTTCTGGTCGGGGACGAGCGGGGACGGGTGGTCATTCACAGCCGTCC
GATGAAAGCTTACGTGTCGTGGAACGGTACACGCTTCACACACGTTCCGA
ACAAAGAGGGCGCGACTGTGTTCCTGTTCCAGCGTGTTGCCCCCCATCCC
GCGACCTCAACCGGTTCTTCGACGTCGAGGCTGGAACGACGCCGAAGGGA
CGAAAGTGGGGGCAAGGAAGGCGTGGGCCGAGAAGGTTCGGCGTCTGGCG
GGACGTTCGGCGGCGCCGGCTGAGCTTGGGATCGCGACGTGGTCGGAGGC
GACTGGGAGGATCTGCAGCTGGAGTGGGTTGGAACTCCCGCCGGCCGCGA
AGGCGTTCTGGTCGGGGACGAGCGGGGACGGGTGGTCATTCACAGCCGTC
CGATGAAAGCTTACGTGTCGTGGAACGGTACACGCTTCACACACGTTCCG
AACAAAGAGGGCGCGACTGTGTTCCTGTTCCAGCGTGTTGCCCCCCATCC
CGCGACCTCAACCGGTTCTTCGACGTCGAGGCTGGAACGACGCCGAAGGG
ACGAAAGTGGGGGCAAGGAAGGCGTGGGCCGAGAAGGTTCGGCGTCTGGC
GGGACGTTCGGCGGCGCCGGCTGA
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