mRNA_H-elongata_contig85557.16143.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85557.16143.1
Unique NamemRNA_H-elongata_contig85557.16143.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig85557.16143.1 vs. uniprot
Match: A0A0T6AUA5_9SCAR (Kinesin light chain n=1 Tax=Oryctes borbonicus TaxID=1629725 RepID=A0A0T6AUA5_9SCAR)

HSP 1 Score: 52.8 bits (125), Expect = 1.470e-6
Identity = 23/37 (62.16%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 QGEYNDSEEYYRRALAIFEQTLGPDHPRIAKLLNDLA 111
            QG+Y + E YY+RAL I+EQTLGPD P +AK  N+LA
Sbjct:   33 QGKYEEVERYYQRALEIYEQTLGPDDPNVAKTKNNLA 69
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BLAST of mRNA_H-elongata_contig85557.16143.1 vs. uniprot
Match: A0A8J3MKP6_9ACTN (Uncharacterized protein n=1 Tax=Catellatospora sp. TT07R-123 TaxID=2733863 RepID=A0A8J3MKP6_9ACTN)

HSP 1 Score: 49.7 bits (117), Expect = 1.980e-5
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:    1 QGEYNDSEEYYRRALAIFEQTLGPDHPRIAKLLNDLAGLLHAKVVRSSELKRHG 162
            QG+Y+D+E   RRAL++ E T GPDHPR+A  LN+LA     K +R  +LKR G
Sbjct:  461 QGQYSDAEPLLRRALSLTEATHGPDHPRVAIRLNNLA-----KAMR--DLKRPG 507
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BLAST of mRNA_H-elongata_contig85557.16143.1 vs. uniprot
Match: UPI001FE0B11C (tetratricopeptide repeat protein n=1 Tax=Dactylosporangium aurantiacum TaxID=35754 RepID=UPI001FE0B11C)

HSP 1 Score: 49.3 bits (116), Expect = 2.710e-5
Identity = 22/37 (59.46%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 QGEYNDSEEYYRRALAIFEQTLGPDHPRIAKLLNDLA 111
            QG Y+ + ++ RRALAI E TLGPDHP++A +LN+LA
Sbjct:  372 QGRYHQALQHKRRALAITEATLGPDHPKVAIMLNNLA 408
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BLAST of mRNA_H-elongata_contig85557.16143.1 vs. uniprot
Match: UPI001AAF897D (Tetratricopeptide repeat protein n=2 Tax=Actinomadura barringtoniae TaxID=1427535 RepID=UPI001AAF897D)

HSP 1 Score: 48.1 bits (113), Expect = 5.170e-5
Identity = 21/42 (50.00%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    4 GEYNDSEEYYRRALAIFEQTLGPDHPRIAKLLNDLAGLLHAK 129
            G  +++E  Y  AL IFE+ LGPDHP+IA + ++LAGL H++
Sbjct:   69 GRIDEAEPCYWHALEIFERILGPDHPQIASIYHNLAGLEHSR 110
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BLAST of mRNA_H-elongata_contig85557.16143.1 vs. uniprot
Match: A0A7I8ESZ2_9CHLR (Tetratricopeptide repeat protein n=1 Tax=Ktedonobacteria bacterium brp13 TaxID=2717365 RepID=A0A7I8ESZ2_9CHLR)

HSP 1 Score: 47.8 bits (112), Expect = 9.560e-5
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    1 QGEYNDSEEYYRRALAIFEQTLGPDHPRIAKLLNDLAGL 117
            QG+Y ++E  Y RALAI+EQ LG DHP  A  LN+LA L
Sbjct:  452 QGKYAEAEPLYLRALAIYEQQLGSDHPNTASSLNNLATL 490
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85557.16143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0T6AUA5_9SCAR1.470e-662.16Kinesin light chain n=1 Tax=Oryctes borbonicus Tax... [more]
A0A8J3MKP6_9ACTN1.980e-551.85Uncharacterized protein n=1 Tax=Catellatospora sp.... [more]
UPI001FE0B11C2.710e-559.46tetratricopeptide repeat protein n=1 Tax=Dactylosp... [more]
UPI001AAF897D5.170e-550.00Tetratricopeptide repeat protein n=2 Tax=Actinomad... [more]
A0A7I8ESZ2_9CHLR9.560e-558.97Tetratricopeptide repeat protein n=1 Tax=Ktedonoba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85557contigH-elongata_contig85557:796..969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931258.6264107-CDS-H-elongata_contig85557:795..9691622931258.6264107-CDS-H-elongata_contig85557:795..969Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85557 796..969 -
1691679762.9589145-CDS-H-elongata_contig85557:795..9691691679762.9589145-CDS-H-elongata_contig85557:795..969Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85557 796..969 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85557.16143.1prot_H-elongata_contig85557.16143.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85557 796..969 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85557.16143.1

>prot_H-elongata_contig85557.16143.1 ID=prot_H-elongata_contig85557.16143.1|Name=mRNA_H-elongata_contig85557.16143.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
QGEYNDSEEYYRRALAIFEQTLGPDHPRIAKLLNDLAGLLHAKVVRSSEL
KRHGLLF*
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mRNA from alignment at H-elongata_contig85557:796..969-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85557.16143.1 ID=mRNA_H-elongata_contig85557.16143.1|Name=mRNA_H-elongata_contig85557.16143.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig85557:796..969- (Himanthalia elongata Himel1 dioecious)
CAGGGTGAGTACAACGACTCTGAGGAATATTACAGGCGTGCCCTCGCCAT
CTTCGAACAAACACTTGGTCCTGACCACCCACGGATCGCGAAGCTTTTGA
ATGACCTGGCGGGGTTGTTACATGCAAAGGTAGTACGCTCTAGTGAACTA
AAAAGACACGGATTATTATTTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig85557:796..969-

>mRNA_H-elongata_contig85557.16143.1 ID=mRNA_H-elongata_contig85557.16143.1|Name=mRNA_H-elongata_contig85557.16143.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig85557:796..969- (Himanthalia elongata Himel1 dioecious)
CAGGGTGAGTACAACGACTCTGAGGAATATTACAGGCGTGCCCTCGCCAT
CTTCGAACAAACACTTGGTCCTGACCACCCACGGATCGCGAAGCTTTTGA
ATGACCTGGCGGGGTTGTTACATGCAAAGGTAGTACGCTCTAGTGAACTA
AAAAGACACGGATTATTATTTTAGCAGGGTGAGTACAACGACTCTGAGGA
ATATTACAGGCGTGCCCTCGCCATCTTCGAACAAACACTTGGTCCTGACC
ACCCACGGATCGCGAAGCTTTTGAATGACCTGGCGGGGTTGTTACATGCA
AAGGTAGTACGCTCTAGTGAACTAAAAAGACACGGATTATTATTTTAG
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