prot_H-elongata_contig85548.16140.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig85548.16140.1
Unique Nameprot_H-elongata_contig85548.16140.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length119
Homology
BLAST of mRNA_H-elongata_contig85548.16140.1 vs. uniprot
Match: D8LIK5_ECTSI (RNA pol II accessory factor, Cdc73 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK5_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 5.570e-38
Identity = 68/100 (68.00%), Postives = 76/100 (76.00%), Query Frame = 0
Query:   15 VVLSPWTNLSFVTRCMIRFFCSTAAFISPTEKKEKGERKPSELVIERTNSQGKRMKFRIIDNATRLHPKEWKACVCVVVQGAAWQFKGWEWDQPVALFQN 114
            V++ P    S VT      F     FI   +KK K ERKPSE++IER NSQGK+MKFR+IDNATRLHPKEWKACVCV+VQGAAWQFKGWEWDQPV LFQN
Sbjct:  312 VIIVPTVPTSLVTLYNATDFLQDGNFIPTMDKKSKSERKPSEIMIERVNSQGKKMKFRVIDNATRLHPKEWKACVCVLVQGAAWQFKGWEWDQPVTLFQN 411          
BLAST of mRNA_H-elongata_contig85548.16140.1 vs. uniprot
Match: A0A835YIM7_9STRA (RNA pol II accessory factor, Cdc73 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIM7_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 5.340e-18
Identity = 42/104 (40.38%), Postives = 63/104 (60.58%), Query Frame = 0
Query:   13 PRVVLSPWTNLSFVTRCMIRFFCSTAAFISPTE--KKEKGERKPSELVIERTNSQGKRMKFRIIDNATRLHPKEWKACVCVVVQGAAWQFKGWEWDQPVALFQN 114
            P +++ P    + +T    + F     F+      +K   +RK S++++ER    G+   +R+IDN TRL P+EW++ VCV+V G AWQFKGW WDQPV LFQ+
Sbjct:  321 PPIIVVPNLQSAVITLANAKEFFEEGRFVPANGVIRKPSVDRKSSDVLVERALPGGRHATYRLIDNPTRLRPREWESIVCVIVAGPAWQFKGWVWDQPVVLFQH 424          
BLAST of mRNA_H-elongata_contig85548.16140.1 vs. uniprot
Match: A0A7S3Y6H8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6H8_HETAK)

HSP 1 Score: 77.4 bits (189), Expect = 1.630e-15
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 0
Query:   34 FCSTAAFISPTEKKEKGERKPSELVIERTNSQGK----RMKFRIIDNATRLHPKEWKACVCVVVQGAAWQFKGWEWDQPVALF 112
            F    +F+   EK+  G  KP+ +V+ER    G        F ++DNA RL P++W   V VVVQGAAWQFKGW++ QP+ LF
Sbjct:   10 FMQDGSFVPSQEKRRAGAAKPARVVVERARPPGAPGEGNWTFEVVDNAARLKPRDWDRVVAVVVQGAAWQFKGWKYPQPLDLF 92          
BLAST of mRNA_H-elongata_contig85548.16140.1 vs. uniprot
Match: A0A7S3T3F7_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3T3F7_EMIHU)

HSP 1 Score: 74.7 bits (182), Expect = 8.370e-14
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 0
Query:   40 FISPTEKKEKGERKPSELVIERTNSQGKRMKFRIIDNATRLHPKEWKACVCVVVQGAAWQFKGWEWDQPVALF 112
            +ISP E K+ G  KP+E+ +E     G R +F +I+NA +L   EW+   CV+VQGAAWQFKGW +     LF
Sbjct:  107 WISPVELKQSGAAKPAEIKLEHCFEDGSRARFLVIENANKLSEAEWRNVACVIVQGAAWQFKGWPFKSEADLF 179          
BLAST of mRNA_H-elongata_contig85548.16140.1 vs. uniprot
Match: A0A7S3WSJ0_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WSJ0_EMIHU)

HSP 1 Score: 74.7 bits (182), Expect = 3.070e-13
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 0
Query:   40 FISPTEKKEKGERKPSELVIERTNSQGKRMKFRIIDNATRLHPKEWKACVCVVVQGAAWQFKGWEWDQPVALF 112
            +ISP E K+ G  KP+E+ +E     G R +F +I+NA +L   EW+   CV+VQGAAWQFKGW +     LF
Sbjct:  369 WISPVELKQSGAAKPAEIKLEHCFEDGSRARFLVIENANKLSEAEWRNVACVIVQGAAWQFKGWPFKSEADLF 441          
BLAST of mRNA_H-elongata_contig85548.16140.1 vs. uniprot
Match: A0A0A9WF39_LYGHE (Parafibromin n=3 Tax=Mirini TaxID=236659 RepID=A0A0A9WF39_LYGHE)

HSP 1 Score: 68.9 bits (167), Expect = 3.280e-11
Identity = 32/99 (32.32%), Postives = 55/99 (55.56%), Query Frame = 0
Query:   15 VVLSPWTNLSFVTRCMIRFFCSTAAFISPTEKKEKGERKPSELVIERTNSQGKRMKFRIIDNATRLHPKEWKACVCVVVQGAAWQFKGWEWD-QPVALF 112
            +++ P  N S +T    +       ++S  EK++ GE++ +E++++R       + +R+IDN  +L P +W   V V V G AWQFKGW +   PV +F
Sbjct:  369 IIIIPSANTSLITMYNAKEILQDLRYVSTEEKRQAGEKRANEVLLQRRKDGNTTVPYRVIDNPQKLGPSDWDRVVAVFVMGPAWQFKGWPFGGNPVEIF 467          
BLAST of mRNA_H-elongata_contig85548.16140.1 vs. uniprot
Match: A0A485LTY1_9STRA (Aste57867_25225 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LTY1_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.990e-10
Identity = 30/99 (30.30%), Postives = 54/99 (54.55%), Query Frame = 0
Query:   15 VVLSPWTNLSFVTRCMIRFFCSTAAFISPTEKKEKGERKPSELVIERTNSQGKRMKFRIIDNATRLHPKEWKACVCVVVQGAAWQFKGWEWDQPVALFQ 113
            +++ P      +T    + F     +++ T+KK +G RKP+ + I+ T       KF+++D+  R   ++WK+ V V+V G  WQFK W W  P+ +F+
Sbjct:  244 IIVVPAGFSDLITLLNAKDFLEDGHYVTTTQKKSEGNRKPASVTIQVTERDVS-YKFKLVDSVIRFSDRDWKSVVGVIVSGQTWQFKDWHWKFPLEVFK 341          
BLAST of mRNA_H-elongata_contig85548.16140.1 vs. uniprot
Match: A0A6H5HBJ7_9HEMI (Uncharacterized protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5HBJ7_9HEMI)

HSP 1 Score: 65.1 bits (157), Expect = 7.320e-10
Identity = 30/99 (30.30%), Postives = 55/99 (55.56%), Query Frame = 0
Query:   15 VVLSPWTNLSFVTRCMIRFFCSTAAFISPTEKKEKGERKPSELVIERTNSQGKRMKFRIIDNATRLHPKEWKACVCVVVQGAAWQFKGWEWD-QPVALF 112
            +++ P    S +T    +       ++S  EK++ GE++ +E++++R       + +R+IDN  +L   +W+  V V V G AWQFKGW ++  PV +F
Sbjct:  370 IIIIPSATKSLITMYNTKEILQDLRYVSTEEKRQAGEKRANEVLLQRRKDGNTTVPYRVIDNPGKLSSSDWERVVAVFVMGPAWQFKGWPYNGNPVEIF 468          
BLAST of mRNA_H-elongata_contig85548.16140.1 vs. uniprot
Match: UPI0007115428 (parafibromin-like protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007115428)

HSP 1 Score: 62.0 bits (149), Expect = 8.090e-9
Identity = 32/98 (32.65%), Postives = 50/98 (51.02%), Query Frame = 0
Query:   15 VVLSPWTNLSFVTRCMIRFFCSTAAFISPTEKKEKGERKPSELVIERTNSQGKRMKFRIIDNATRLHPKEWKACVCVVVQGAAWQFKGWEWDQPVALF 112
            +V++P    + +T   +  F     +IS    + K   KP E+V+ R  + G+ M+FR IDN ++L   EW   VC++     WQF+GW    P  LF
Sbjct:  217 IVVAPSAGNNVITMFNVEQFMEKGEYISSDVMRRKSPLKPQEVVLIREIN-GRPMRFRFIDNPSKLSAGEWDRIVCIIAGTQPWQFRGWRITDPAVLF 313          
BLAST of mRNA_H-elongata_contig85548.16140.1 vs. uniprot
Match: G1QAF1_MYOLU (Uncharacterized protein n=1 Tax=Myotis lucifugus TaxID=59463 RepID=G1QAF1_MYOLU)

HSP 1 Score: 61.2 bits (147), Expect = 1.300e-8
Identity = 35/115 (30.43%), Postives = 55/115 (47.83%), Query Frame = 0
Query:   15 VVLSPWTNLSFVTRCMIRFFCSTAAFISPTEKKEKGERKPSELVIERTNSQGKR-------MKFRIIDNATRLHPKEWKACVCVVVQGAAWQFKGWEW----DQPVALFQNGKSY 118
            ++  P    SF+TR   +       F+   EKK++G ++  E +  R +    R       +  R++D    L P++W   V V+VQG AWQFKGW W      PV +F   K++
Sbjct:  148 IITIPAATTSFITRLNAKDLLQDLRFVPLDEKKKQGCQREEETIQTRKDPMQPRGTALSLTVPCRVVDPPLTLRPQDWDRVVAVIVQGPAWQFKGWPWLLPHGSPVDVFVKSKAF 262          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85548.16140.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LIK5_ECTSI5.570e-3868.00RNA pol II accessory factor, Cdc73 family protein ... [more]
A0A835YIM7_9STRA5.340e-1840.38RNA pol II accessory factor, Cdc73 family protein ... [more]
A0A7S3Y6H8_HETAK1.630e-1544.58Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3T3F7_EMIHU8.370e-1446.58Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S3WSJ0_EMIHU3.070e-1346.58Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A0A9WF39_LYGHE3.280e-1132.32Parafibromin n=3 Tax=Mirini TaxID=236659 RepID=A0A... [more]
A0A485LTY1_9STRA4.990e-1030.30Aste57867_25225 protein n=1 Tax=Aphanomyces stella... [more]
A0A6H5HBJ7_9HEMI7.320e-1030.30Uncharacterized protein n=1 Tax=Nesidiocoris tenui... [more]
UPI00071154288.090e-932.65parafibromin-like protein n=1 Tax=Blastocystis sp.... [more]
G1QAF1_MYOLU1.300e-830.43Uncharacterized protein n=1 Tax=Myotis lucifugus T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031336Cell division control protein 73, C-terminalPFAMPF05179CDC73_Ccoord: 15..117
e-value: 3.2E-22
score: 78.9
IPR038103Cell division control protein 73, C-terminal domain superfamilyGENE3D3.40.50.11990coord: 6..119
e-value: 2.7E-20
score: 74.5
IPR007852Cdc73/ParafibrominPANTHERPTHR12466CDC73 DOMAIN PROTEINcoord: 18..116

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85548contigH-elongata_contig85548:345..1386 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85548.16140.1mRNA_H-elongata_contig85548.16140.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig85548 345..1386 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig85548.16140.1 ID=prot_H-elongata_contig85548.16140.1|Name=mRNA_H-elongata_contig85548.16140.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
PVPVPSPPEKCLPRVVLSPWTNLSFVTRCMIRFFCSTAAFISPTEKKEKG
ERKPSELVIERTNSQGKRMKFRIIDNATRLHPKEWKACVCVVVQGAAWQF
KGWEWDQPVALFQNGKSYL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031336CDC73_C
IPR038103CDC73_C_sf
IPR007852Cdc73/Parafibromin