mRNA_H-elongata_contig85523.16138.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig85523.16138.1 vs. uniprot
Match: D8LCR9_ECTSI (NF-X1 finger and helicase domain protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCR9_ECTSI) HSP 1 Score: 195 bits (496), Expect = 3.180e-55 Identity = 86/120 (71.67%), Postives = 95/120 (79.17%), Query Frame = 1
Query: 1 MWSESVLPTLRAKGLIGPALELQCARHPETITTICKPEEFESLAGDGGCSQACSLRLPCGHTCARRCHPDDPEHHGVRCNEPCLRLHKPCEHPCTLLCGDDCGPCRQRIDAVDLPCGHRV 360
MWSESV+P LR KG IG LELQCARH ++IT I K EEF SLAGDGGCS+ACS RLPCGH C RRCHPDDP H GVRC+EPC RL +PCEH LCGD+CGPC QR+D V LPCGH +
Sbjct: 1628 MWSESVIPILREKGAIGTTLELQCARHKDSITVIHKYEEFASLAGDGGCSRACSSRLPCGHACLRRCHPDDPHHLGVRCSEPCPRLLQPCEHXXXXLCGDECGPCYQRVDVVGLPCGHEM 1747
BLAST of mRNA_H-elongata_contig85523.16138.1 vs. uniprot
Match: A0A2I1GNP4_9GLOM (P-loop containing nucleoside triphosphate hydrolase protein n=12 Tax=Rhizophagus TaxID=1129544 RepID=A0A2I1GNP4_9GLOM) HSP 1 Score: 140 bits (352), Expect = 7.910e-36 Identity = 63/138 (45.65%), Postives = 81/138 (58.70%), Query Frame = 1
Query: 1 MWSESVLPTLRAKGLIGPALELQCARHPETITTICKPEEFESLAGDGGCSQACSLRLPCGHTCARRCHPDDPEHHGVR--CNEPCLRLHKPCEHPCTLLCGDDCGPCRQRIDAVDLPCGHRVTNVACVIAQAPETAKC 408
MW +SV+ +R + IG + ++C HP++I I P +F+ L+ DGGCS C R+PCGH CA +CHPDDPEH G C PCL LHK C H C L CG CG C ++ + LPCGH + C Q P KC
Sbjct: 1412 MW-KSVINLMRERNQIGKSFPIRCESHPDSINYIKSPRQFQELSPDGGCSLPCLCRMPCGHNCAYKCHPDDPEHVGAAKACMRPCLELHKNCNHICPLPCGVPCGECEIVLEDILLPCGHNYPSPKCYQTQNPNLIKC 1548
BLAST of mRNA_H-elongata_contig85523.16138.1 vs. uniprot
Match: A0A397SDG8_9GLOM (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397SDG8_9GLOM) HSP 1 Score: 139 bits (351), Expect = 1.040e-35 Identity = 58/126 (46.03%), Postives = 81/126 (64.29%), Query Frame = 1
Query: 1 MWSESVLPTLRAKGLIGPALELQCARHPETITTICKPEEFESLAGDGGCSQACSLRLPCGHTCARRCHPDDPEHHGVRCNEPCLRLHKPCEHPCTLLCGDDCGPCRQRIDAVDLP-CGHRVTNVAC 375
MW+ V+ L +G +G + ++C +HP+ + I +PE+FE ++ DGGC Q C++ LPCGH C+ +CH DDPEH GV+CN+PC R H C HPC C +DCG C I + LP CGH + N C
Sbjct: 653 MWTP-VIDILHRRGQVGFGMPIKCHKHPDYVNVIVEPEQFEQVSPDGGCYQNCNMSLPCGHICSYKCHSDDPEHIGVKCNKPCSRCHSGCNHPCPKSCFEDCGKCGFSIGDIILPGCGHVLQNAKC 777
BLAST of mRNA_H-elongata_contig85523.16138.1 vs. uniprot
Match: A0A2I1H2I4_9GLOM (Uncharacterized protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2I1H2I4_9GLOM) HSP 1 Score: 139 bits (350), Expect = 1.450e-35 Identity = 60/137 (43.80%), Postives = 84/137 (61.31%), Query Frame = 1
Query: 1 MWSESVLPTLRAKGLIGPALELQCARHPETITTICKPEEFESLAGDGGCSQACSLRLPCGHTCARRCHPDDPEHHGVRCNEPCLRLHKPCEHPCTLLCGDDCGPCRQRIDAVDLP-CGHRVTNVACVIAQAPETAKC 408
MW+ V+ L + +G + + C +HP+ I P++FE ++ DGGC + C++ LPCGH C +CH DDPEH GVRCNEPC+RLH C HPC LC D CG C I + LP CGH + N C ++ ++ +C
Sbjct: 767 MWAP-VINILNDRKQVGFGMPIVCNKHPDYKNIIIDPDQFEQVSPDGGCYENCNMSLPCGHICKYKCHSDDPEHIGVRCNEPCIRLHPECSHPCPKLCSDYCGKCEFLIGDIILPGCGHEIKNAKCWQDRSKDSLRC 902
BLAST of mRNA_H-elongata_contig85523.16138.1 vs. uniprot
Match: A0A2P4PK82_RHIID (Uncharacterized protein n=2 Tax=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) TaxID=747089 RepID=A0A2P4PK82_RHIID) HSP 1 Score: 139 bits (350), Expect = 1.450e-35 Identity = 60/137 (43.80%), Postives = 84/137 (61.31%), Query Frame = 1
Query: 1 MWSESVLPTLRAKGLIGPALELQCARHPETITTICKPEEFESLAGDGGCSQACSLRLPCGHTCARRCHPDDPEHHGVRCNEPCLRLHKPCEHPCTLLCGDDCGPCRQRIDAVDLP-CGHRVTNVACVIAQAPETAKC 408
MW+ V+ L + +G + + C +HP+ I P++FE ++ DGGC + C++ LPCGH C +CH DDPEH GVRCNEPC+RLH C HPC LC D CG C I + LP CGH + N C ++ ++ +C
Sbjct: 781 MWTP-VINILNDRKQVGFGMPIVCNKHPDYKNIIIDPDQFEQVSPDGGCYENCNMSLPCGHICKYKCHSDDPEHIGVRCNEPCIRLHPECSHPCPKLCSDYCGKCEFLIGDIILPGCGHEIKNAKCWQDRSKDSLRC 916
BLAST of mRNA_H-elongata_contig85523.16138.1 vs. uniprot
Match: A0A372R9B3_9GLOM (Uncharacterized protein (Fragment) n=1 Tax=Rhizophagus sp. MUCL 43196 TaxID=1803374 RepID=A0A372R9B3_9GLOM) HSP 1 Score: 139 bits (349), Expect = 1.980e-35 Identity = 60/136 (44.12%), Postives = 81/136 (59.56%), Query Frame = 1
Query: 1 MWSESVLPTLRAKGLIGPALELQCARHPETITTICKPEEFESLAGDGGCSQACSLRLPCGHTCARRCHPDDPEHHGVRCNEPCLRLHKPCEHPCTLLCGDDCGPCRQRIDAVDLPCGHRVTNVACVIAQAPETAKC 408
MW+ V+ L + +G + + C +HP TI P++FE ++ DGGC + C++ LPCGH C +CH DDPEH GV+CNE C RLH C HPC C DDCG C I ++ L CGH + N C Q ++ KC
Sbjct: 953 MWAP-VINILHGRNQVGFGIPIVCNKHPYYKNTIVDPDQFEQISPDGGCYENCNMALPCGHICKYKCHSDDPEHIGVKCNERCSRLHSICHHPCPKFCSDDCGRCEFPIGSILLRCGHILQNAKCWQIQIMDSIKC 1087
BLAST of mRNA_H-elongata_contig85523.16138.1 vs. uniprot
Match: A0A2N0PD28_9GLOM (Uncharacterized protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N0PD28_9GLOM) HSP 1 Score: 137 bits (346), Expect = 5.090e-35 Identity = 59/136 (43.38%), Postives = 81/136 (59.56%), Query Frame = 1
Query: 1 MWSESVLPTLRAKGLIGPALELQCARHPETITTICKPEEFESLAGDGGCSQACSLRLPCGHTCARRCHPDDPEHHGVRCNEPCLRLHKPCEHPCTLLCGDDCGPCRQRIDAVDLPCGHRVTNVACVIAQAPETAKC 408
MW+ V+ L + +G + + C +HP TI P++FE ++ DGGC + C++ LPCGH C +CH DDPEH GV+CNE C RLH C HPC C D+CG C I ++ L CGH + N C Q ++ KC
Sbjct: 1410 MWAP-VINILHNRNQVGFGMPIICNKHPHYKNTIVDPDQFEQISPDGGCYENCNMALPCGHICKYKCHSDDPEHIGVKCNERCSRLHSKCHHPCPKFCSDECGRCEFPIGSILLRCGHILQNAKCWQIQIMDSIKC 1544
BLAST of mRNA_H-elongata_contig85523.16138.1 vs. uniprot
Match: A0A015LDX1_RHIIW (Ecm32p n=11 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015LDX1_RHIIW) HSP 1 Score: 137 bits (346), Expect = 5.090e-35 Identity = 59/136 (43.38%), Postives = 81/136 (59.56%), Query Frame = 1
Query: 1 MWSESVLPTLRAKGLIGPALELQCARHPETITTICKPEEFESLAGDGGCSQACSLRLPCGHTCARRCHPDDPEHHGVRCNEPCLRLHKPCEHPCTLLCGDDCGPCRQRIDAVDLPCGHRVTNVACVIAQAPETAKC 408
MW+ V+ L + +G + + C +HP TI P++FE ++ DGGC + C++ LPCGH C +CH DDPEH GV+CNE C RLH C HPC C D+CG C I ++ L CGH + N C Q ++ KC
Sbjct: 1467 MWAP-VINILHNRNQVGFGMPIICNKHPHYKNTIVDPDQFEQISPDGGCYENCNMALPCGHICKYKCHSDDPEHIGVKCNERCSRLHSKCHHPCPKFCSDECGRCEFPIGSILLRCGHILQNAKCWQIQIMDSIKC 1601
BLAST of mRNA_H-elongata_contig85523.16138.1 vs. uniprot
Match: V5ZE24_9GLOM (Putative RNA helicase (Fragment) n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=V5ZE24_9GLOM) HSP 1 Score: 137 bits (344), Expect = 6.430e-35 Identity = 57/123 (46.34%), Postives = 80/123 (65.04%), Query Frame = 1
Query: 1 MWSESVLPTLRAKGLIGPALELQCARHPETITTICKPEEFESLAGDGGCSQACSLRLPCGHTCARRCHPDDPEHHGVRCNEPCLRLHKPCEHPCTLLCGDDCGPCRQRIDAVDLP-CGHRVTN 366
MW+ V+ L +G +G + ++C +HP+ + I +PE+FE ++ DGGC Q C++ LPCGH C+ +CH DDPEH GV+CN+PC R H C HPC C +DCG C I + LP CGH + N
Sbjct: 557 MWTP-VIDILHRRGQVGFGMPIKCHKHPDYVNVIVEPEQFEQVSPDGGCYQNCNMSLPCGHICSYKCHSDDPEHIGVKCNKPCSRCHSGCNHPCPKSCFEDCGKCGFSIGDIILPGCGHVLQN 678
BLAST of mRNA_H-elongata_contig85523.16138.1 vs. uniprot
Match: D8TT17_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TT17_VOLCA) HSP 1 Score: 137 bits (344), Expect = 9.420e-35 Identity = 66/126 (52.38%), Postives = 77/126 (61.11%), Query Frame = 1
Query: 1 MWSESVLPTLRAKGLIGPALELQCARHPETITTICKPEEFESLAGDGGCSQACSLRLPCGHTCARRCHPDDPEHHGVRCNEPCLRLHKPCEHPCTLLCGDDCGPCRQRI-DAVDLPCGHRVTNVAC 375
MW + VL L G +G AL ++CA H T T I +PE+F LAGDGGC AC LPCGHTC RRCHPDD H V C PC RLH C HP CG++CG C + I + V LPCGH V + C
Sbjct: 1012 MWCQ-VLDLLERDGCVGRALRVRCANHG-TETEIHEPEDFSRLAGDGGCQAACGEALPCGHTCPRRCHPDDRSHVHVVCTRPCARLHAKCGHPXDKTCGEECGRCMRVIQEEVTLPCGHGVHGIDC 1135 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85523.16138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig85523.16138.1 >prot_H-elongata_contig85523.16138.1 ID=prot_H-elongata_contig85523.16138.1|Name=mRNA_H-elongata_contig85523.16138.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp MWSESVLPTLRAKGLIGPALELQCARHPETITTICKPEEFESLAGDGGCSback to top mRNA from alignment at H-elongata_contig85523:165..2207+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig85523.16138.1 ID=mRNA_H-elongata_contig85523.16138.1|Name=mRNA_H-elongata_contig85523.16138.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2043bp|location=Sequence derived from alignment at H-elongata_contig85523:165..2207+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig85523:165..2207+ >mRNA_H-elongata_contig85523.16138.1 ID=mRNA_H-elongata_contig85523.16138.1|Name=mRNA_H-elongata_contig85523.16138.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig85523:165..2207+ (Himanthalia elongata Himel1 dioecious)back to top |