mRNA_H-elongata_contig85519.16137.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85519.16137.1
Unique NamemRNA_H-elongata_contig85519.16137.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig85519.16137.1 vs. uniprot
Match: A0A7S2EII9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EII9_TRICV)

HSP 1 Score: 136 bits (343), Expect = 1.000e-39
Identity = 67/71 (94.37%), Postives = 71/71 (100.00%), Query Frame = 1 
Query:   37 QVKNAVVTVPAYFNDSQRQATKDAGSIAGLNVMRIINEPTAAAIAYGLDKKGEEKNVLIFDLGGGTFDVSV 249
            +VKNAVVTVPAYFNDSQRQATKDAGSIAGLNV+RIINEPTAAAIAYGLD+KGEEKNVLIFDLGGGTFDVS+
Sbjct:   51 EVKNAVVTVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAAIAYGLDQKGEEKNVLIFDLGGGTFDVSL 121
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BLAST of mRNA_H-elongata_contig85519.16137.1 vs. uniprot
Match: A0A7S2FKZ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FKZ2_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.220e-39
Identity = 67/70 (95.71%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:   40 VKNAVVTVPAYFNDSQRQATKDAGSIAGLNVMRIINEPTAAAIAYGLDKKGEEKNVLIFDLGGGTFDVSV 249
            VKNAVVTVPAYFNDSQRQATKDAGSIAGLNV+RIINEPTAAAIAYGLDKKG+EKNVLIFDLGGGTFDVS+
Sbjct:    9 VKNAVVTVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAAIAYGLDKKGDEKNVLIFDLGGGTFDVSL 78
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BLAST of mRNA_H-elongata_contig85519.16137.1 vs. uniprot
Match: A0A7S2JW65_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JW65_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.210e-38
Identity = 67/71 (94.37%), Postives = 71/71 (100.00%), Query Frame = 1 
Query:   37 QVKNAVVTVPAYFNDSQRQATKDAGSIAGLNVMRIINEPTAAAIAYGLDKKGEEKNVLIFDLGGGTFDVSV 249
            +VKNAVVTVPAYFNDSQRQATKDAGSIAGLNVMRIINEPTAAAIAYGLD+KG+EKNVLIFDLGGGTFDVS+
Sbjct:   70 EVKNAVVTVPAYFNDSQRQATKDAGSIAGLNVMRIINEPTAAAIAYGLDQKGDEKNVLIFDLGGGTFDVSL 140
[Close]
BLAST of mRNA_H-elongata_contig85519.16137.1 vs. uniprot
Match: A0A7S4K2P8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4K2P8_9EUKA)

HSP 1 Score: 130 bits (326), Expect = 1.390e-37
Identity = 64/71 (90.14%), Postives = 68/71 (95.77%), Query Frame = 1 
Query:   37 QVKNAVVTVPAYFNDSQRQATKDAGSIAGLNVMRIINEPTAAAIAYGLDKKGEEKNVLIFDLGGGTFDVSV 249
            +VK AVVTVPAYFND+QRQATKDAG IAGLNV RIINEPTAAAIAYGLDKKGEE+NVLIFDLGGGTFDVS+
Sbjct:   21 EVKEAVVTVPAYFNDAQRQATKDAGIIAGLNVRRIINEPTAAAIAYGLDKKGEERNVLIFDLGGGTFDVSL 91
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BLAST of mRNA_H-elongata_contig85519.16137.1 vs. uniprot
Match: A0A7R9YZE1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YZE1_9STRA)

HSP 1 Score: 135 bits (340), Expect = 3.790e-37
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = 1 
Query:   37 QVKNAVVTVPAYFNDSQRQATKDAGSIAGLNVMRIINEPTAAAIAYGLDKKGEEKNVLIFDLGGGTFDVSV 249
            +VKNAVVTVPAYFNDSQRQATKDAGSIAGLNV RIINEPTAAAIAYGLDKKG EKNVLIFDLGGGTFDVS+
Sbjct:  141 EVKNAVVTVPAYFNDSQRQATKDAGSIAGLNVQRIINEPTAAAIAYGLDKKGSEKNVLIFDLGGGTFDVSL 211
[Close]
BLAST of mRNA_H-elongata_contig85519.16137.1 vs. uniprot
Match: W2R9K4_PHYPN (Hsp70-like protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=W2R9K4_PHYPN)

HSP 1 Score: 132 bits (332), Expect = 5.690e-37
Identity = 64/70 (91.43%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:   37 QVKNAVVTVPAYFNDSQRQATKDAGSIAGLNVMRIINEPTAAAIAYGLDKKGEEKNVLIFDLGGGTFDVS 246
            +VKNAV+TVPAYFNDSQRQATKDAG+IAGLNV+RIINEPTAAAIAYGLDKKG E+NVLIFDLGGGTFDVS
Sbjct:  142 EVKNAVITVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGLDKKGGERNVLIFDLGGGTFDVS 211
[Close]
BLAST of mRNA_H-elongata_contig85519.16137.1 vs. uniprot
Match: A0A7S0Q9V9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q9V9_9EUKA)

HSP 1 Score: 132 bits (331), Expect = 8.060e-37
Identity = 64/71 (90.14%), Postives = 69/71 (97.18%), Query Frame = 1 
Query:   37 QVKNAVVTVPAYFNDSQRQATKDAGSIAGLNVMRIINEPTAAAIAYGLDKKGEEKNVLIFDLGGGTFDVSV 249
            +VKNAV+TVPAYFNDSQRQATKDAG I+GLNV+RIINEPTAAAIAYGLDKKG EKNVLIFDLGGGTFDVS+
Sbjct:  140 EVKNAVITVPAYFNDSQRQATKDAGVISGLNVLRIINEPTAAAIAYGLDKKGAEKNVLIFDLGGGTFDVSL 210
[Close]
BLAST of mRNA_H-elongata_contig85519.16137.1 vs. uniprot
Match: A0A7S1E4B1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E4B1_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.260e-36
Identity = 64/71 (90.14%), Postives = 71/71 (100.00%), Query Frame = 1 
Query:   37 QVKNAVVTVPAYFNDSQRQATKDAGSIAGLNVMRIINEPTAAAIAYGLDKKGEEKNVLIFDLGGGTFDVSV 249
            +VKNAVVTVPAYFNDSQRQATKDAG+I+GLNV+RIINEPTAAAIAYGLD+KG+EKNVLIFDLGGGTFDVS+
Sbjct:   55 EVKNAVVTVPAYFNDSQRQATKDAGAISGLNVLRIINEPTAAAIAYGLDQKGDEKNVLIFDLGGGTFDVSL 125
[Close]
BLAST of mRNA_H-elongata_contig85519.16137.1 vs. uniprot
Match: A0A023Q1K6_9CRUS (Heat shock protein 70 (Fragment) n=3 Tax=Gammarus TaxID=45625 RepID=A0A023Q1K6_9CRUS)

HSP 1 Score: 128 bits (322), Expect = 1.990e-36
Identity = 63/72 (87.50%), Postives = 70/72 (97.22%), Query Frame = 1 
Query:   37 QVKNAVVTVPAYFNDSQRQATKDAGSIAGLNVMRIINEPTAAAIAYGLDKKGE-EKNVLIFDLGGGTFDVSV 249
            +VK+AV+TVPAYFNDSQRQATKDAG+IAGLNV+RIINEPTAAAIAYGLDKKG  EKN+LIFDLGGGTFDVS+
Sbjct:   39 EVKDAVITVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGLDKKGRGEKNILIFDLGGGTFDVSI 110
[Close]
BLAST of mRNA_H-elongata_contig85519.16137.1 vs. uniprot
Match: A0A0B6YP30_9EUPU (Uncharacterized protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6YP30_9EUPU)

HSP 1 Score: 127 bits (320), Expect = 2.020e-36
Identity = 61/70 (87.14%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:   40 VKNAVVTVPAYFNDSQRQATKDAGSIAGLNVMRIINEPTAAAIAYGLDKKGEEKNVLIFDLGGGTFDVSV 249
            VKNAV+TVPAYFND+QRQATKDAG+IAGLNV+RIINEPTAAAIAYGLDKK  EKN+L+FDLGGGTFDVS+
Sbjct:    1 VKNAVITVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDKKEGEKNILVFDLGGGTFDVSL 70
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85519.16137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2EII9_TRICV1.000e-3994.37Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2FKZ2_9STRA1.220e-3995.71Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2JW65_9STRA1.210e-3894.37Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S4K2P8_9EUKA1.390e-3790.14Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
A0A7R9YZE1_9STRA3.790e-3794.37Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
W2R9K4_PHYPN5.690e-3791.43Hsp70-like protein n=2 Tax=Peronosporaceae TaxID=4... [more]
A0A7S0Q9V9_9EUKA8.060e-3790.14Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A7S1E4B1_9STRA1.260e-3690.14Hypothetical protein (Fragment) n=2 Tax=Thalassion... [more]
A0A023Q1K6_9CRUS1.990e-3687.50Heat shock protein 70 (Fragment) n=3 Tax=Gammarus ... [more]
A0A0B6YP30_9EUPU2.020e-3687.14Uncharacterized protein (Fragment) n=1 Tax=Arion v... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85519contigH-elongata_contig85519:2265..2513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.5
Seed ortholog evalue2.8e-30
Seed eggNOG ortholog2880.D8LI58
KEGG koko:K03283
KEGG TC1.A.33.1
KEGG Pathwayko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00353,M00355
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0015630,GO:0031982,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.ATP binding
EggNOG OGsCOG0443@1,KOG0101@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931258.1996083-CDS-H-elongata_contig85519:2264..25131622931258.1996083-CDS-H-elongata_contig85519:2264..2513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85519 2265..2513 +
1691679762.8081243-CDS-H-elongata_contig85519:2264..25131691679762.8081243-CDS-H-elongata_contig85519:2264..2513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85519 2265..2513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85519.16137.1prot_H-elongata_contig85519.16137.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85519 2265..2513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85519.16137.1

>prot_H-elongata_contig85519.16137.1 ID=prot_H-elongata_contig85519.16137.1|Name=mRNA_H-elongata_contig85519.16137.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
SVLSDCATPFEPQVKNAVVTVPAYFNDSQRQATKDAGSIAGLNVMRIINE
PTAAAIAYGLDKKGEEKNVLIFDLGGGTFDVSV
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mRNA from alignment at H-elongata_contig85519:2265..2513+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85519.16137.1 ID=mRNA_H-elongata_contig85519.16137.1|Name=mRNA_H-elongata_contig85519.16137.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=249bp|location=Sequence derived from alignment at H-elongata_contig85519:2265..2513+ (Himanthalia elongata Himel1 dioecious)
TCTGTTCTTTCCGACTGCGCGACCCCTTTTGAGCCACAGGTGAAAAACGC
GGTGGTAACCGTACCCGCGTATTTCAACGATTCCCAGCGCCAGGCCACCA
AAGATGCCGGTTCCATCGCCGGCCTGAACGTTATGCGGATCATCAACGAG
CCTACGGCCGCCGCCATCGCATACGGTCTCGACAAGAAGGGGGAGGAAAA
GAACGTGCTGATCTTCGACCTCGGCGGGGGCACGTTCGATGTTTCAGTG
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Coding sequence (CDS) from alignment at H-elongata_contig85519:2265..2513+

>mRNA_H-elongata_contig85519.16137.1 ID=mRNA_H-elongata_contig85519.16137.1|Name=mRNA_H-elongata_contig85519.16137.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig85519:2265..2513+ (Himanthalia elongata Himel1 dioecious)
TCTGTTCTTTCCGACTGCGCGACCCCTTTTGAGCCACAGGTGAAAAACGC
GGTGGTAACCGTACCCGCGTATTTCAACGATTCCCAGCGCCAGGCCACCA
AAGATGCCGGTTCCATCGCCGGCCTGAACGTTATGCGGATCATCAACGAG
CCTACGGCCGCCGCCATCGCATACGGTCTCGACAAGAAGGGGGAGGAAAA
GAACGTGCTGATCTTCGACCTCGGCGGGGGCACGTTCGATGTTTCAGTGT
CTGTTCTTTCCGACTGCGCGACCCCTTTTGAGCCACAGGTGAAAAACGCG
GTGGTAACCGTACCCGCGTATTTCAACGATTCCCAGCGCCAGGCCACCAA
AGATGCCGGTTCCATCGCCGGCCTGAACGTTATGCGGATCATCAACGAGC
CTACGGCCGCCGCCATCGCATACGGTCTCGACAAGAAGGGGGAGGAAAAG
AACGTGCTGATCTTCGACCTCGGCGGGGGCACGTTCGATGTTTCAGTG
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