mRNA_H-elongata_contig85519.16136.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85519.16136.1
Unique NamemRNA_H-elongata_contig85519.16136.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig85519.16136.1 vs. uniprot
Match: A0A6H5KPS7_9PHAE (HSP70 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPS7_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 1.250e-61
Identity = 92/108 (85.19%), Postives = 103/108 (95.37%), Query Frame = 1 
Query:    1 VEIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNASNTVFDAKRMIGRRFSDPAVAADRKHWPFSVIEGAGGKPMIEIMFKGENKKFSPEEISSMVLVKMREIAE 324
            VEIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNA+NTVFDAKR+IGRR++DPAVA+D+KHWPF V+EG GGKP IE+ FKGE K+F+PEEISSMVLVKM+EIAE
Sbjct:   28 VEIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNATNTVFDAKRLIGRRYTDPAVASDKKHWPFHVVEGPGGKPTIEVSFKGEKKQFAPEEISSMVLVKMKEIAE 135
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BLAST of mRNA_H-elongata_contig85519.16136.1 vs. uniprot
Match: A0A6H5JJT8_9PHAE (HSP70 protein n=10 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5JJT8_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 2.770e-56
Identity = 92/108 (85.19%), Postives = 103/108 (95.37%), Query Frame = 1 
Query:    1 VEIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNASNTVFDAKRMIGRRFSDPAVAADRKHWPFSVIEGAGGKPMIEIMFKGENKKFSPEEISSMVLVKMREIAE 324
            VEIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNA+NTVFDAKR+IGRR++DPAVA+D+KHWPF V+EG GGKP IE+ FKGE K+F+PEEISSMVLVKM+EIAE
Sbjct:   28 VEIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNATNTVFDAKRLIGRRYTDPAVASDKKHWPFHVVEGPGGKPTIEVSFKGEKKQFAPEEISSMVLVKMKEIAE 135
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BLAST of mRNA_H-elongata_contig85519.16136.1 vs. uniprot
Match: W2LHN5_PHYPR (Hsp70-like protein (Fragment) n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2LHN5_PHYPR)

HSP 1 Score: 179 bits (454), Expect = 5.420e-56
Identity = 85/108 (78.70%), Postives = 95/108 (87.96%), Query Frame = 1 
Query:    1 VEIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNASNTVFDAKRMIGRRFSDPAVAADRKHWPFSVIEGAGGKPMIEIMFKGENKKFSPEEISSMVLVKMREIAE 324
            VEIIANDQGNRTTPSYVAFT++ERLIGDAAKNQVAMNA+NTVFDAKR+IGR+FSDP V AD KHWPF +  G G KP I + FKGE+K F PEEISSMVL+KMRE+AE
Sbjct:   29 VEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNAANTVFDAKRLIGRKFSDPIVQADIKHWPFKITSGPGDKPQITVQFKGESKTFQPEEISSMVLIKMREVAE 136
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BLAST of mRNA_H-elongata_contig85519.16136.1 vs. uniprot
Match: A0A6H5KQY2_9PHAE (HSP70 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQY2_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 9.770e-56
Identity = 92/108 (85.19%), Postives = 103/108 (95.37%), Query Frame = 1 
Query:    1 VEIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNASNTVFDAKRMIGRRFSDPAVAADRKHWPFSVIEGAGGKPMIEIMFKGENKKFSPEEISSMVLVKMREIAE 324
            VEIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNA+NTVFDAKR+IGR+F+DPAVA+D+KHWPFSV+ G GGKP IE+ FKGE K+F+PEEISSMVLVKM+EIAE
Sbjct:   28 VEIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNATNTVFDAKRLIGRKFTDPAVASDKKHWPFSVVAGPGGKPTIEVSFKGEKKQFAPEEISSMVLVKMKEIAE 135
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BLAST of mRNA_H-elongata_contig85519.16136.1 vs. uniprot
Match: W7TRP6_9STRA (Heat shock protein 70 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRP6_9STRA)

HSP 1 Score: 192 bits (487), Expect = 2.080e-55
Identity = 91/108 (84.26%), Postives = 102/108 (94.44%), Query Frame = 1 
Query:    1 VEIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNASNTVFDAKRMIGRRFSDPAVAADRKHWPFSVIEGAGGKPMIEIMFKGENKKFSPEEISSMVLVKMREIAE 324
            VEIIANDQGNRTTPSYVAFTE+ERLIGDAAKNQVAMNASNTVFDAKR+IGRRFSDP V AD KHWPF+V++G GGKP+I++ FKGE+K F+PEEISSMVL+KMREIAE
Sbjct:   29 VEIIANDQGNRTTPSYVAFTESERLIGDAAKNQVAMNASNTVFDAKRLIGRRFSDPVVQADMKHWPFTVVQGPGGKPLIQVTFKGESKTFAPEEISSMVLIKMREIAE 136
[Close]
BLAST of mRNA_H-elongata_contig85519.16136.1 vs. uniprot
Match: W2NND8_PHYPR (Hsp70-like protein (Fragment) n=2 Tax=Phytophthora TaxID=4783 RepID=W2NND8_PHYPR)

HSP 1 Score: 178 bits (452), Expect = 2.660e-55
Identity = 85/108 (78.70%), Postives = 94/108 (87.04%), Query Frame = 1 
Query:    1 VEIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNASNTVFDAKRMIGRRFSDPAVAADRKHWPFSVIEGAGGKPMIEIMFKGENKKFSPEEISSMVLVKMREIAE 324
            VEIIANDQGNRTTPSYVAFT++ERLIGDAAKNQVAMNA NTVFDAKR+IGR+FSDP V AD KHWPF +  G G KP I + FKGE+K F PEEISSMVL+KMRE+AE
Sbjct:   29 VEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNAHNTVFDAKRLIGRKFSDPIVQADIKHWPFKITSGPGDKPQITVQFKGESKTFQPEEISSMVLIKMREVAE 136
[Close]
BLAST of mRNA_H-elongata_contig85519.16136.1 vs. uniprot
Match: W2R9K4_PHYPN (Hsp70-like protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=W2R9K4_PHYPN)

HSP 1 Score: 179 bits (454), Expect = 5.320e-55
Identity = 85/108 (78.70%), Postives = 95/108 (87.96%), Query Frame = 1 
Query:    1 VEIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNASNTVFDAKRMIGRRFSDPAVAADRKHWPFSVIEGAGGKPMIEIMFKGENKKFSPEEISSMVLVKMREIAE 324
            VEIIANDQGNRTTPSYVAFT++ERLIGDAAKNQVAMNA+NTVFDAKR+IGR+FSDP V AD KHWPF +  G G KP I + FKGE+K F PEEISSMVL+KMRE+AE
Sbjct:   29 VEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNAANTVFDAKRLIGRKFSDPIVQADIKHWPFKITSGPGDKPQITVQFKGESKTFQPEEISSMVLIKMREVAE 136
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BLAST of mRNA_H-elongata_contig85519.16136.1 vs. uniprot
Match: A0A329RQH7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RQH7_9STRA)

HSP 1 Score: 182 bits (461), Expect = 9.820e-55
Identity = 87/108 (80.56%), Postives = 95/108 (87.96%), Query Frame = 1 
Query:    1 VEIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNASNTVFDAKRMIGRRFSDPAVAADRKHWPFSVIEGAGGKPMIEIMFKGENKKFSPEEISSMVLVKMREIAE 324
            VEIIANDQGNRTTPSYVAFT+TERLIGDAAKNQVAMNA NTVFDAKR+IGR+FSDP V AD KHWPF +  GAG KP I + FKGE+K F PEEISSMVL+KMRE+AE
Sbjct:   29 VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNAHNTVFDAKRLIGRKFSDPIVQADIKHWPFKITSGAGDKPQITVQFKGESKTFQPEEISSMVLIKMREVAE 136
[Close]
BLAST of mRNA_H-elongata_contig85519.16136.1 vs. uniprot
Match: A0A7S2MA59_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2MA59_9STRA)

HSP 1 Score: 176 bits (446), Expect = 2.880e-54
Identity = 85/108 (78.70%), Postives = 94/108 (87.04%), Query Frame = 1 
Query:    1 VEIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNASNTVFDAKRMIGRRFSDPAVAADRKHWPFSVIEGAGGKPMIEIMFKGENKKFSPEEISSMVLVKMREIAE 324
            VEIIANDQGNRTTPSYVAFTETERLIGDAAK+Q AMNA+NTVFDAKR+IGR+FSDP V +D KHWPF V  G GG P+IE+ +KGE K+F  EEISSMVL KMREIAE
Sbjct:   28 VEIIANDQGNRTTPSYVAFTETERLIGDAAKSQAAMNATNTVFDAKRLIGRKFSDPGVQSDMKHWPFKVTPGPGGTPIIEVEYKGETKQFKAEEISSMVLTKMREIAE 135
[Close]
BLAST of mRNA_H-elongata_contig85519.16136.1 vs. uniprot
Match: A0A7S3Y1R9_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1R9_HETAK)

HSP 1 Score: 181 bits (459), Expect = 3.140e-54
Identity = 87/108 (80.56%), Postives = 97/108 (89.81%), Query Frame = 1 
Query:    1 VEIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNASNTVFDAKRMIGRRFSDPAVAADRKHWPFSVIEGAGGKPMIEIMFKGENKKFSPEEISSMVLVKMREIAE 324
            VEIIANDQGNRTTPSYVAFTETERLIGD+AKNQVAMNASNTVFDAKR IGR++ DPA   D KH PF++I G GGKPMI++ FKGE K+F+PEEISSMVLVKM+EIAE
Sbjct:   54 VEIIANDQGNRTTPSYVAFTETERLIGDSAKNQVAMNASNTVFDAKRFIGRKYDDPATQEDMKHLPFTIINGKGGKPMIQVQFKGETKQFAPEEISSMVLVKMKEIAE 161
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85519.16136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPS7_9PHAE1.250e-6185.19HSP70 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5JJT8_9PHAE2.770e-5685.19HSP70 protein n=10 Tax=Phaeophyceae TaxID=2870 Rep... [more]
W2LHN5_PHYPR5.420e-5678.70Hsp70-like protein (Fragment) n=1 Tax=Phytophthora... [more]
A0A6H5KQY2_9PHAE9.770e-5685.19HSP70 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
W7TRP6_9STRA2.080e-5584.26Heat shock protein 70 n=2 Tax=Monodopsidaceae TaxI... [more]
W2NND8_PHYPR2.660e-5578.70Hsp70-like protein (Fragment) n=2 Tax=Phytophthora... [more]
W2R9K4_PHYPN5.320e-5578.70Hsp70-like protein n=2 Tax=Peronosporaceae TaxID=4... [more]
A0A329RQH7_9STRA9.820e-5580.56Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A7S2MA59_9STRA2.880e-5478.70Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S3Y1R9_HETAK3.140e-5480.56Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85519contigH-elongata_contig85519:673..996 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.4
Seed ortholog evalue2.1e-46
Seed eggNOG ortholog2880.D8LI58
KEGG koko:K03283
KEGG TC1.A.33.1
KEGG Pathwayko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00353,M00355
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0015630,GO:0031982,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.ATP binding
EggNOG OGsCOG0443@1,KOG0101@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931258.1366575-CDS-H-elongata_contig85519:672..9961622931258.1366575-CDS-H-elongata_contig85519:672..996Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85519 673..996 +
1691679762.789556-CDS-H-elongata_contig85519:672..9961691679762.789556-CDS-H-elongata_contig85519:672..996Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85519 673..996 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85519.16136.1prot_H-elongata_contig85519.16136.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85519 673..996 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85519.16136.1

>prot_H-elongata_contig85519.16136.1 ID=prot_H-elongata_contig85519.16136.1|Name=mRNA_H-elongata_contig85519.16136.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
VEIIANDQGNRTTPSYVAFTETERLIGDAAKNQVAMNASNTVFDAKRMIG
RRFSDPAVAADRKHWPFSVIEGAGGKPMIEIMFKGENKKFSPEEISSMVL
VKMREIAE
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mRNA from alignment at H-elongata_contig85519:673..996+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85519.16136.1 ID=mRNA_H-elongata_contig85519.16136.1|Name=mRNA_H-elongata_contig85519.16136.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at H-elongata_contig85519:673..996+ (Himanthalia elongata Himel1 dioecious)
GTGGAGATCATCGCCAATGACCAAGGAAACCGTACCACACCATCGTACGT
CGCCTTCACTGAGACCGAGCGTCTCATCGGCGACGCAGCGAAGAACCAAG
TGGCGATGAACGCGTCCAACACTGTATTTGACGCCAAGCGAATGATTGGC
CGTCGCTTTAGCGACCCCGCAGTTGCGGCCGATAGGAAACACTGGCCTTT
CAGCGTCATCGAGGGGGCAGGCGGGAAGCCAATGATCGAGATTATGTTCA
AGGGCGAAAATAAAAAGTTTTCCCCTGAGGAGATCTCGTCCATGGTGCTC
GTGAAGATGAGGGAGATCGCTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig85519:673..996+

>mRNA_H-elongata_contig85519.16136.1 ID=mRNA_H-elongata_contig85519.16136.1|Name=mRNA_H-elongata_contig85519.16136.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig85519:673..996+ (Himanthalia elongata Himel1 dioecious)
GTGGAGATCATCGCCAATGACCAAGGAAACCGTACCACACCATCGTACGT
CGCCTTCACTGAGACCGAGCGTCTCATCGGCGACGCAGCGAAGAACCAAG
TGGCGATGAACGCGTCCAACACTGTATTTGACGCCAAGCGAATGATTGGC
CGTCGCTTTAGCGACCCCGCAGTTGCGGCCGATAGGAAACACTGGCCTTT
CAGCGTCATCGAGGGGGCAGGCGGGAAGCCAATGATCGAGATTATGTTCA
AGGGCGAAAATAAAAAGTTTTCCCCTGAGGAGATCTCGTCCATGGTGCTC
GTGAAGATGAGGGAGATCGCTGAGGTGGAGATCATCGCCAATGACCAAGG
AAACCGTACCACACCATCGTACGTCGCCTTCACTGAGACCGAGCGTCTCA
TCGGCGACGCAGCGAAGAACCAAGTGGCGATGAACGCGTCCAACACTGTA
TTTGACGCCAAGCGAATGATTGGCCGTCGCTTTAGCGACCCCGCAGTTGC
GGCCGATAGGAAACACTGGCCTTTCAGCGTCATCGAGGGGGCAGGCGGGA
AGCCAATGATCGAGATTATGTTCAAGGGCGAAAATAAAAAGTTTTCCCCT
GAGGAGATCTCGTCCATGGTGCTCGTGAAGATGAGGGAGATCGCTGAG
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