mRNA_H-elongata_contig85483.16134.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig85483.16134.1 vs. uniprot
Match: D7FUY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUY5_ECTSI) HSP 1 Score: 142 bits (359), Expect = 2.610e-40 Identity = 60/104 (57.69%), Postives = 87/104 (83.65%), Query Frame = 1
Query: 1 GSLTNVLVWRLEDEQVSGRLEVRCEYALNSKGLLGVSIREHLLLPDENMPRDPEDLLRLLQRAMPYEMFDPDEHALETTYMDENMRIVRMRGPKHEGRLNVFIR 312
G+LTN++ W L+DE + GRLEV C+Y+ + +G + S+R+HLLLPD MPRDP++L+R+L+RAMPYE+FDPD+HA+ETT++D+ +RIV+ RGPK EG +N+F R
Sbjct: 127 GNLTNIITWTLKDEGIDGRLEVMCDYSFDPRGRMNTSLRKHLLLPD-GMPRDPQELVRVLRRAMPYELFDPDDHAMETTFLDDTLRIVKHRGPKFEGLVNIFAR 229
BLAST of mRNA_H-elongata_contig85483.16134.1 vs. uniprot
Match: K0TAS2_THAOC (PAP_fibrillin domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TAS2_THAOC) HSP 1 Score: 93.2 bits (230), Expect = 5.110e-21 Identity = 47/110 (42.73%), Postives = 68/110 (61.82%), Query Frame = 1
Query: 1 GSLTNVLVWRL----EDEQVSGRLEVRCEYALNSKGLLGVSIREHLLLPDE--NMPRDPEDLLRLLQRAMPYEMFDPDEHALETTYMDENMRIVRMRGPKHEGRLNVFIR 312
G+LTN+ W E SG C Y++N + V +++H L P + ++P D L+ LL RAMP E+FDP HAL+TTY+D ++RIVR+ GP+HEG N+F+R
Sbjct: 122 GTLTNIASWDYAETGEQFDSSGNFSAVCTYSINQGARMVVDLKDHELRPAKGSSIPSDVPGLVGLLHRAMPKELFDPSAHALDTTYLDADIRIVRLTGPQHEGVRNIFMR 231
BLAST of mRNA_H-elongata_contig85483.16134.1 vs. uniprot
Match: B8BYW6_THAPS (PAP_fibrillin domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYW6_THAPS) HSP 1 Score: 95.5 bits (236), Expect = 1.230e-20 Identity = 49/110 (44.55%), Postives = 70/110 (63.64%), Query Frame = 1
Query: 1 GSLTNVLVWRL-EDEQV---SGRLEVRCEYALNSKGLLGVSIREHLLLPDEN--MPRDPEDLLRLLQRAMPYEMFDPDEHALETTYMDENMRIVRMRGPKHEGRLNVFIR 312
GS+TN+ W EDE+ +G V+C Y +N + V + +H L P + +P D L+ LL RA+P EMFDP+ HA++TTY+D ++RIVR+ GP HEG N+FIR
Sbjct: 560 GSVTNMAQWDFAEDEETFDATGNFNVKCSYTINQGARMVVDLDDHELRPAKGSKIPSDVPALVGLLHRAIPKEMFDPNGHAMDTTYLDADLRIVRLTGPNHEGVRNIFIR 669
BLAST of mRNA_H-elongata_contig85483.16134.1 vs. uniprot
Match: A0A7S0AIY2_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AIY2_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 1.930e-20 Identity = 45/112 (40.18%), Postives = 69/112 (61.61%), Query Frame = 1
Query: 1 GSLTNVLVWRLEDE-----QVSGRLEVRCEYALNSKGLLGVSIREHLL--LPDENMPRDPEDLLRLLQRAMPYEMFDPDEHALETTYMDENMRIVRMRGPKHEGRLNVFIRD 315
G++TN+ W L +E SG V+C+Y +N + + +++H+L +P D E L+ +L AMP EMFDP+E A++TTY+DE +R+VR+ G + EG NVFIR
Sbjct: 101 GTVTNMARWDLAEEVPGVFDCSGTFSVKCDYGINQGARMNIDLKDHVLELARGSRVPTDVEGLVGMLSGAMPSEMFDPNELAMDTTYLDEKIRVVRLTGSRLEGVRNVFIRS 212
BLAST of mRNA_H-elongata_contig85483.16134.1 vs. uniprot
Match: A0A7S2FVE3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FVE3_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 3.540e-20 Identity = 41/104 (39.42%), Postives = 62/104 (59.62%), Query Frame = 1
Query: 1 GSLTNVLVWRLEDEQVSGRLEVRCEYALNSKGLLGVSIREHLLLPDENMPRDPEDLLRLLQRAMPYEMFDPDEHALETTYMDENMRIVRMRGPKHEGRLNVFIR 312
G LTN + W L +E SG +E++C+Y + KG L + + EH+L P P DP L +LQRA+P E+F P+E + TYMD ++R+V K+ N++ R
Sbjct: 67 GKLTNTIAWELVEEGASGTMEIKCDYMVTPKGDLHLDLTEHVLTPVNGSPADPMQLCGMLQRAVPPEVFMPEELDVHITYMDADIRVVECTSRKYGTSKNIYSR 170
BLAST of mRNA_H-elongata_contig85483.16134.1 vs. uniprot
Match: A0A7S2XQJ7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQJ7_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 1.230e-19 Identity = 42/111 (37.84%), Postives = 72/111 (64.86%), Query Frame = 1
Query: 1 GSLTNVLVWRLEDEQ-----VSGRLEVRCEYALNSKGLLGVSIREHLLLP--DENMPRDPEDLLRLLQRAMPYEMFDPDEHALETTYMDENMRIVRMRGPKHEGRLNVFIR 312
G++TN+ W L + + V+G V+C+Y + + V +++HLL P +P+D + L+ LL RAMP E+FDP++ ++TTY+D +++IVR+ G ++EG N+FIR
Sbjct: 188 GTITNIATWDLSEGEGGVFDVTGTFSVKCDYEIEQGSRMKVELKDHLLEPARGSKIPQDVQGLVGLLHRAMPTELFDPNDVNIDTTYLDADLKIVRLTGSRYEGIRNIFIR 298
BLAST of mRNA_H-elongata_contig85483.16134.1 vs. uniprot
Match: A0A1Z5JQY1_FISSO (PAP_fibrillin domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JQY1_FISSO) HSP 1 Score: 89.7 bits (221), Expect = 1.700e-19 Identity = 47/111 (42.34%), Postives = 68/111 (61.26%), Query Frame = 1
Query: 1 GSLTNVLVWRLEDE-----QVSGRLEVRCEYALNSKGLLGVSIREHLLLPDEN--MPRDPEDLLRLLQRAMPYEMFDPDEHALETTYMDENMRIVRMRGPKHEGRLNVFIR 312
G L N W L ++ + SG V C Y +N + +S+ EH+L P + +P+D L+ LL RAMP EMFDP +HA++TTY+D ++RIVR GP+ EG ++FIR
Sbjct: 143 GKLINEATWDLAEQGDGNFECSGTFTVDCSYKINQGARMILSLDEHILKPAKGTKIPKDVPALVGLLHRAMPKEMFDPADHAIDTTYLDGDLRIVRHTGPRLEGVRDIFIR 253
BLAST of mRNA_H-elongata_contig85483.16134.1 vs. uniprot
Match: A0A448ZFM7_9STRA (PAP_fibrillin domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZFM7_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 2.220e-19 Identity = 41/116 (35.34%), Postives = 70/116 (60.34%), Query Frame = 1
Query: 1 GSLTNVLVWRLEDEQVS----------GRLEVRCEYALNSKGLLGVSIREHL--LLPDENMPRDPEDLLRLLQRAMPYEMFDPDEHALETTYMDENMRIVRMRGPKHEGRLNVFIR 312
G++ N W L ++ G+ ++C Y++N + + + +H+ L +P+DPE L+ +L RA+P E+FDP++HA++TTY+D ++RIVRM GPK E ++FIR
Sbjct: 182 GTVVNEATWSLAEDHTDPTPATSFEAFGKFSIKCSYSINQGARMVMELNDHVIELSKGSKVPKDPEKLVGMLYRAIPTELFDPNDHAMDTTYLDGDLRIVRMAGPKFESVRDIFIR 297
BLAST of mRNA_H-elongata_contig85483.16134.1 vs. uniprot
Match: B7G6D7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G6D7_PHATC) HSP 1 Score: 83.6 bits (205), Expect = 5.050e-17 Identity = 41/111 (36.94%), Postives = 66/111 (59.46%), Query Frame = 1
Query: 1 GSLTNVLVWRLEDE-----QVSGRLEVRCEYALNSKGLLGVSIREHLLLPDEN--MPRDPEDLLRLLQRAMPYEMFDPDEHALETTYMDENMRIVRMRGPKHEGRLNVFIR 312
G +TN +W L + +G V+C Y++N + V + +HLL P +P+D + L+ L RAMP +FDP +HA++TTY+D ++RIVR G + EG ++F+R
Sbjct: 161 GVVTNQALWDLAEAGDAAFDATGTFSVKCNYSINQGARMIVDLEDHLLQPARGSAIPQDVQGLVGYLHRAMPKTLFDPSDHAMDTTYLDVDLRIVRYTGARLEGSRDIFMR 271
BLAST of mRNA_H-elongata_contig85483.16134.1 vs. uniprot
Match: A0A7S1CY27_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CY27_CYCTE) HSP 1 Score: 81.3 bits (199), Expect = 1.830e-16 Identity = 41/113 (36.28%), Postives = 64/113 (56.64%), Query Frame = 1
Query: 1 GSLTNVLVWRLEDE------QVSGRLEVRCEYALNSKGLLGVSIREHL--LLPDENMPRDPEDLLRLLQRAMPYEMFDPDEHALETTYMDENMRIVRMRGPKHEGRLNVFIRD 315
G + NV +W + + SG V+C Y++N + V + H L +P+D ++ + AMP E+FDP EHA++TTY+D ++RIVR GPK+EG ++FIR
Sbjct: 114 GRVNNVALWDVALDPSSDVFDASGIFSVKCTYSINQGARMVVDLDGHTIELAKGSKLPKDVPAVIASIHGAMPPELFDPSEHAMDTTYLDGDLRIVRYTGPKYEGARDIFIRS 226 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85483.16134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig85483.16134.1 >prot_H-elongata_contig85483.16134.1 ID=prot_H-elongata_contig85483.16134.1|Name=mRNA_H-elongata_contig85483.16134.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp GSLTNVLVWRLEDEQVSGRLEVRCEYALNSKGLLGVSIREHLLLPDENMPback to top mRNA from alignment at H-elongata_contig85483:1715..2353+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig85483.16134.1 ID=mRNA_H-elongata_contig85483.16134.1|Name=mRNA_H-elongata_contig85483.16134.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=639bp|location=Sequence derived from alignment at H-elongata_contig85483:1715..2353+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig85483:1715..2353+ >mRNA_H-elongata_contig85483.16134.1 ID=mRNA_H-elongata_contig85483.16134.1|Name=mRNA_H-elongata_contig85483.16134.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig85483:1715..2353+ (Himanthalia elongata Himel1 dioecious)back to top |