mRNA_H-elongata_contig8548.16133.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8548.16133.1
Unique NamemRNA_H-elongata_contig8548.16133.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig8548.16133.1 vs. uniprot
Match: D8LDP8_ECTSI (ARC5, dynamin-related protein involved in plastid division n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP8_ECTSI)

HSP 1 Score: 776 bits (2005), Expect = 4.130e-272
Identity = 385/433 (88.91%), Postives = 408/433 (94.23%), Query Frame = 1
Query:    1 QDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPDCDQPRCYLTLEDGKEEPRSLQEIQAYIESENRRLERDPVRSFDSREINIRMEYRFCPNMILIDTPGLIHAPSGRTLNAEQRSLTAAAREAENLVVQKMRCQDYVILCVEDTTDWKHATTRNVVAQVDPDMSRTVLVTTKLDTKLPQFGASEDLEDFVMAPQMQRVYRCMLGGPFFTTVPSGRVGRTRESAYFSNEAFVQAVRRSERDDQTFVATKLGPQAAPACLPRVGVSRLRRFLERRVEECYRRNVARIVPQLQHEMAKAEGRLLATEQEIKALSLESLKASADEYREHLSRALSRSIQGTIKAPPEKFGETLEAEQLRAGSFLDEADVDPDEWDRMMEIEVGNGGNKLFGGAQYHRVLREFNFAIRHMNAPEV 1299
            QDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPDCDQPRCYL LEDGKEEPRSLQEIQAYIESENRRLERDPVRSFDSREINIRMEYRFCPNMILIDTPGLIHAPSG  LNAEQR++ AAA+EAENLV+QKMRCQDYVILCVEDTTDWKHATTRN+V QVD D+SRTVLVTTKLDTKLPQFG  +DL+DF+ AP +QR+YRCMLGGPFFTTVPSGRVGR R+SAYFSNEAFV  VRRSERDDQ  VA KLGPQAAP+CLPRVGVSRLRRFLERRVEECYRRNVARIVP LQ EM++AEGRLL TEQEI ALSLESLKASADEYREH SRAL R+IQGTIKAPPEKFGETLEAEQLRAGSF++++DVD D+W+R+MEIEVGNG NKLFGGAQYHR LREFNFAIRHMNAPEV
Sbjct:  112 QDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPDCDQPRCYLALEDGKEEPRSLQEIQAYIESENRRLERDPVRSFDSREINIRMEYRFCPNMILIDTPGLIHAPSGSNLNAEQRAVAAAAKEAENLVIQKMRCQDYVILCVEDTTDWKHATTRNIVTQVDHDLSRTVLVTTKLDTKLPQFGGGDDLQDFLRAPSIQRMYRCMLGGPFFTTVPSGRVGRARDSAYFSNEAFVHGVRRSERDDQMLVAAKLGPQAAPSCLPRVGVSRLRRFLERRVEECYRRNVARIVPLLQQEMSRAEGRLLTTEQEIDALSLESLKASADEYREHFSRALGRAIQGTIKAPPEKFGETLEAEQLRAGSFIEDSDVDADQWERLMEIEVGNGENKLFGGAQYHRALREFNFAIRHMNAPEV 544          
BLAST of mRNA_H-elongata_contig8548.16133.1 vs. uniprot
Match: A0A835YPI8_9STRA (Dynamin-type G domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPI8_9STRA)

HSP 1 Score: 684 bits (1766), Expect = 7.440e-238
Identity = 334/433 (77.14%), Postives = 382/433 (88.22%), Query Frame = 1
Query:    1 QDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPDCDQPRCYLTLEDGKEEPRSLQEIQAYIESENRRLERDPVRSFDSREINIRMEYRFCPNMILIDTPGLIHAPSGRTLNAEQRSLTAAAREAENLVVQKMRCQDYVILCVEDTTDWKHATTRNVVAQVDPDMSRTVLVTTKLDTKLPQFGASEDLEDFVMAPQMQRVYRCMLGGPFFTTVPSGRVGRTRESAYFSNEAFVQAVRRSERDDQTFVATKLGPQAAPACLPRVGVSRLRRFLERRVEECYRRNVARIVPQLQHEMAKAEGRLLATEQEIKALSLESLKASADEYREHLSRALSRSIQGTIKAPPEKFGETLEAEQLRAGSFLDEADVDPDEWDRMMEIEVGNGGNKLFGGAQYHRVLREFNFAIRHMNAPEV 1299
            QDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPDCDQPRCYLTLE+G+EEPRSL EIQAYIE+EN+RLERDP+RSFD+REI IRMEYRFCPNMILIDTPGLI AP G+ LNA+Q++L   ARE+E LV+QKMRC+DY+ILCVEDTTDWKHATTRNVV QVDP + RTVLV TKLDTK+PQF   EDL+DF+ AP MQ++Y  +LGGPFFT+VPSGRVGR RES Y SNEAFV  VRR+ERDD   VA KLGP A   CLPRVGVSRLRRFLERRVE+CY+RNVARIVP LQ E+ KAE RLLATE+E+ ALSL+ LKA A++YREH  RAL  +IQGTI+APP++FGETLE+EQL+AGSF+D   VD D+WDR+ME+EVGN  ++LFGGAQYHRVLREF +A+RHM++PE+
Sbjct:   97 QDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPDCDQPRCYLTLENGREEPRSLSEIQAYIEAENKRLERDPIRSFDAREIMIRMEYRFCPNMILIDTPGLIQAPRGKHLNAQQQALLQVARESEQLVLQKMRCEDYIILCVEDTTDWKHATTRNVVMQVDPSLERTVLVCTKLDTKIPQFSTGEDLQDFIEAPLMQKMYGSLLGGPFFTSVPSGRVGRGRESTYLSNEAFVAGVRRAERDDSMGVAAKLGPAAGAYCLPRVGVSRLRRFLERRVEDCYKRNVARIVPLLQRELTKAEARLLATEREMSALSLDQLKAGAEDYREHFVRALGSAIQGTIQAPPDQFGETLESEQLQAGSFIDAGRVDTDQWDRLMEVEVGNSAHRLFGGAQYHRVLREFAYAVRHMSSPEI 529          
BLAST of mRNA_H-elongata_contig8548.16133.1 vs. uniprot
Match: A0A835Z9B7_9STRA (Dynamin-type G domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9B7_9STRA)

HSP 1 Score: 643 bits (1659), Expect = 1.000e-220
Identity = 327/445 (73.48%), Postives = 368/445 (82.70%), Query Frame = 1
Query:    1 QDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPDCDQPRCYLTLEDGKEEPRSLQEIQAYIESENRRLERDPVRSFDSREINIRMEYRFCPNMILIDTPGLIHAPSGRTLNAEQRSLTAAAREAENLVVQKMRCQDYVILCVEDTTDWKHATTRNVVAQVDPDMSRTVLVTTKLDTKLPQFGASEDLEDFVMAPQMQRVYRCMLGGPFFTTVPSGRVGRTRESAYFSNEAFVQAVRRSERDDQTFVATKLGPQAAPACLPRVGVSRLRRFLERRVEECYRR------------NVARIVPQLQHEMAKAEGRLLATEQEIKALSLESLKASADEYREHLSRALSRSIQGTIKAPPEKFGETLEAEQLRAGSFLDEADVDPDEWDRMMEIEVGNGGNKLFGGAQYHRVLREFNFAIRHMNAPEV 1299
            QDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPDCDQPRCYLTLE+G+EEPRSL EIQAYIE+EN+RLERDP+RSFD+REI IRMEYRFCPNMILIDTPGLI AP G+ LNA+Q++L  AA+E E LV+QKMRCQD++ILCVEDTTDWKHATTRNVV QVDP + RTVLV TKLDTKLPQF + EDLEDF+ AP M+R+Y  +LGGPFFT+VPSGRVGR RESAYFSNEAFV  VRR+ERDD   VA+KLGP A   CLP VGVSRLRRFLERRVE+CY              NVARIVP LQ E+ KAEGRLLATE+E+ ALSL+ LKASA+EY +                    FGETLE+EQL+AGSF+D   VD D+WDR+ME+EVGN G++LFGGAQYHRVLREF FA+RHM +PE+
Sbjct:   90 QDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPDCDQPRCYLTLENGREEPRSLAEIQAYIEAENKRLERDPIRSFDAREIMIRMEYRFCPNMILIDTPGLIQAPRGKHLNAQQQALLQAAKECEQLVIQKMRCQDFIILCVEDTTDWKHATTRNVVMQVDPSLERTVLVCTKLDTKLPQFSSGEDLEDFIDAPVMRRMYSGLLGGPFFTSVPSGRVGRGRESAYFSNEAFVAGVRRAERDDSMHVASKLGPTAGTQCLPHVGVSRLRRFLERRVEDCYXXXXXXXXXXXXXXNVARIVPLLQRELTKAEGRLLATERELSALSLDQLKASAEEYHQ--------------------FGETLESEQLQAGSFVDSGRVDGDKWDRLMEVEVGNTGHRLFGGAQYHRVLREFAFAVRHMPSPEI 514          
BLAST of mRNA_H-elongata_contig8548.16133.1 vs. uniprot
Match: A0A4D9DCK2_9STRA (Dynamin-type G domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DCK2_9STRA)

HSP 1 Score: 570 bits (1468), Expect = 1.550e-192
Identity = 284/434 (65.44%), Postives = 348/434 (80.18%), Query Frame = 1
Query:    1 QDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPDCDQPRCYLTLEDGKEEPRSLQEIQAYIESENRRLERDPVRSFDSREINIRMEYRFCPNMILIDTPGLIHAPSG-RTLNAEQRSLTAAAREAENLVVQKMRCQDYVILCVEDTTDWKHATTRNVVAQVDPDMSRTVLVTTKLDTKLPQFGASEDLEDFVMAPQMQRVYRCMLGGPFFTTVPSGRVGRTRESAYFSNEAFVQAVRRSERDDQTFVATKLGPQAAPACLPRVGVSRLRRFLERRVEECYRRNVARIVPQLQHEMAKAEGRLLATEQEIKALSLESLKASADEYREHLSRALSRSIQGTIKAPPEKFGETLEAEQLRAGSFLDEADVDPDEWDRMMEIEVGNGGNKLFGGAQYHRVLREFNFAIRHMNAPEV 1299
            QDF KPFD+ A+L+VG QT GKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNP C QP C+LTL++GKEE RSL+EIQ YIE EN+RLE D +R FD REI +R+EYRFCPNMI+IDTPGL+ AP+  R +N +QR L  AA+EAE+LV++KM+CQDY+ILCVEDTTDWKH+TTRN+V Q DPD+ RTVLVTTK DTKLPQFG SEDLEDF+ AP +Q++Y  MLGGPF+T+VP GRVG  ++SA+ SNE FV+AV++ E+ D   +  +LG   A   L RVGVSRLRRFLE+RVEECYRRNVA+IVP LQ E+  AE +L  T QE++ALS++ LK +A+++RE   R+L   IQGTI+A P ++GETLE EQLR GSFLD  DV  + W+R+M+ EVGN  ++LFGGAQYHR LREF  A+R M  P +
Sbjct:  143 QDFQKPFDATAILIVGQQTGGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPRCSQPHCFLTLDNGKEEARSLKEIQQYIEGENKRLENDELRCFDPREIMVRVEYRFCPNMIVIDTPGLLSAPAKLRHMNEQQRQLHQAAKEAEHLVLEKMKCQDYLILCVEDTTDWKHSTTRNIVMQADPDLRRTVLVTTKFDTKLPQFGTSEDLEDFLRAPLIQKLYPQMLGGPFYTSVPCGRVGMGKDSAFISNEVFVEAVKKVEKYDHARIEARLGSVGAAPLLQRVGVSRLRRFLEKRVEECYRRNVAKIVPLLQGELRSAEMKLGQTNQELEALSMDFLKKTANQFREFFLRSLGLVIQGTIQASPAQYGETLETEQLRGGSFLDAKDVPAERWERIMDEEVGNAHHRLFGGAQYHRALREFTLAVRLMKTPTI 576          
BLAST of mRNA_H-elongata_contig8548.16133.1 vs. uniprot
Match: A0A7S3UW64_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UW64_HETAK)

HSP 1 Score: 534 bits (1375), Expect = 6.130e-180
Identity = 269/428 (62.85%), Postives = 340/428 (79.44%), Query Frame = 1
Query:    1 QDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPDCDQPRCYLTLEDGKEEPRSLQEIQAYIESENRRLERDPVRSFDSREINIRMEYRFCPNMILIDTPGLIHAPSGRTLNAEQRSLTAAAREAENLVVQKMRCQDYVILCVEDTTDWKHATTRNVVAQVDPDMSRTVLVTTKLDTKLPQFGASEDLEDFVMAPQMQRVYRCMLGGPFFTTVPSGRVGRTRESAYFSNEAFVQAVRRSERDDQTFVATKLGPQAAPACLPRVGVSRLRRFLERRVEECYRRNVARIVPQLQHEMAKAEGRLLATEQEIKALSLESLKASADEYREHLSRALSRSIQGTIKAPPEKFGETLEAEQLRAGSFLDEADVDPDEWDRMMEIEVGNGGNKLFGGAQYHRVLREFNFAIRHM 1284
            QDF KPFDSPAV+VVGHQTSGKSALIEALMGFQFNQVGGGTKTRRP+AL+MQ+NPDC QPRCYLT ++G+EE  +L++IQAYIE EN+RLE DP+R FD REINIRMEYRFCPNMI+IDTPGL+  P+GR LN +QR+L  A+REAE LV+ K+ C+DY+ILCVEDTTDWKHA+TRN+V QVDPD++RTV+VTTKLDTK+PQFG + DL+DF+    M+R+Y  MLGGPFFT+VPSGRVG TRE+AY++NE FV   RR +  D++ +  +LG  A    L +VG S LR FLE+RVE+ YRRNVA+IVP LQ E+ K E +L   ++E+ +LS+E L+ +AD  +E  SR ++++IQG+I AP  +FGETLE E  RAG+FL+   + PD    ++E  VG+   KL+GGAQYHR LREF  A+ +M
Sbjct:   72 QDFKKPFDSPAVVVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPVALKMQFNPDCTQPRCYLTRDNGREELMTLRDIQAYIEVENKRLEADPLRCFDPREINIRMEYRFCPNMIVIDTPGLLQPPTGRNLNNQQRALLQASREAEALVLDKIDCKDYIILCVEDTTDWKHASTRNIVQQVDPDLARTVIVTTKLDTKIPQFGEARDLKDFLRPQIMRRLYPAMLGGPFFTSVPSGRVGSTREAAYYTNEDFVLGCRRLQLADESQIRRRLGAGAGRV-LEQVGTSHLRSFLEKRVEDNYRRNVAKIVPMLQMEVGKTEAKLRTIQKELDSLSVEHLRQTADMLKEQFSRTIAQAIQGSIIAPASEFGETLETEHQRAGAFLNFEALHPDHIMDLLEECVGDESIKLYGGAQYHRCLREFGTAVANM 498          
BLAST of mRNA_H-elongata_contig8548.16133.1 vs. uniprot
Match: A0A6H5JQ42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ42_9PHAE)

HSP 1 Score: 505 bits (1300), Expect = 3.020e-168
Identity = 250/292 (85.62%), Postives = 270/292 (92.47%), Query Frame = 1
Query:  424 AAREAENLVVQKMRCQDYVILCVEDTTDWKHATTRNVVAQVDPDMSRTVLVTTKLDTKLPQFGASEDLEDFVMAPQMQRVYRCMLGGPFFTTVPSGRVGRTRESAYFSNEAFVQAVRRSERDDQTFVATKLGPQAAPACLPRVGVSRLRRFLERRVEECYRRNVARIVPQLQHEMAKAEGRLLATEQEIKALSLESLKASADEYREHLSRALSRSIQGTIKAPPEKFGETLEAEQLRAGSFLDEADVDPDEWDRMMEIEVGNGGNKLFGGAQYHRVLREFNFAIRHMNAPEV 1299
            AA+EAENLV+QKMRCQDYVILCVEDTTDWKHATTRN+V QVD D+SRTVLVTTKLDTKLPQFG  +DL+DF+ AP +QR+YRCMLGGPFFTTVPSGRVGR R+SAYFSNEAFV  VRRSERDDQ  VA KLGPQAAP CLPRVGVSRLRRFLERRVEECYRRNVARIVP LQ EM++AEGRLL TEQEI ALSLESLKASADEYREH SRAL R+IQGTIKAPPEKFGETLEAEQLRAGSF++++DVD D+W+R+MEIEVGNG NKLFGGAQYHR LREFNFAIRHMNAPEV
Sbjct:   13 AAKEAENLVIQKMRCQDYVILCVEDTTDWKHATTRNIVTQVDHDLSRTVLVTTKLDTKLPQFGGGDDLQDFLRAPSIQRMYRCMLGGPFFTTVPSGRVGRARDSAYFSNEAFVHGVRRSERDDQMLVAAKLGPQAAPTCLPRVGVSRLRRFLERRVEECYRRNVARIVPLLQQEMSRAEGRLLTTEQEIDALSLESLKASADEYREHFSRALGRAIQGTIKAPPEKFGETLEAEQLRAGSFIEDSDVDADQWERLMEIEVGNGDNKLFGGAQYHRALREFNFAIRHMNAPEV 304          
BLAST of mRNA_H-elongata_contig8548.16133.1 vs. uniprot
Match: B8C5C4_THAPS (Dynamin-type G domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5C4_THAPS)

HSP 1 Score: 493 bits (1268), Expect = 5.830e-166
Identity = 269/448 (60.04%), Postives = 325/448 (72.54%), Query Frame = 1
Query:    1 QDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPDCDQPRCYLTLEDGKEEPRSLQEIQAYIESENRRLERDPVRSFDSREINIRMEYRFCPNMILIDTPGLIHAPSGR---TLNAEQRSLTAAAREAENLVVQKMRCQDYVILCVEDTTDWKHATTRNVVAQVDPDMSRTVLVTTKLDTKLPQFGASEDLEDFVMAPQMQRVYRCMLGGPFFTTVPSGRVGRTRESA------YFSNEAFVQAVRRSERDDQTFV---ATKLGPQ---AAPACLPRVGVSRLRRFLERRVEECYRRNVARIVPQLQHEMAKAEGRLLATEQEIKALSLESLKASADEYREHLSRALSRSIQGTIKAPPEKFGETLEAEQLRAGSFLDEADVDPDEWDRMMEIEVGNGGNKLFGGAQYHRVLREFNFAIRHMNAPEV 1299
            QDF KPFD+PAV+VVGHQ+SGKSALIEALMGFQFNQVGGGTKTRRP+ALRMQYNP C  PRC+L  +DG E P+SL EIQ YIESEN+RLE+DPVRSFD REIN+RMEY++CPNMILIDTPGLI AP  R   + N +QR+L  AAREAE LVV KM+CQDY+ILCVEDT DWKH  TR VV + DPD+SRTV+V TKLDTKLPQFG   D+ DF+ A  ++R+    LGGPF+T+VPSGRV R  ES       +  ++ FV A    E  D+  V     +LG +   +  + LP+VG+SRLR FLERRV+ECYRRNVA+IVP L+ E   AE RL   E+E++A+SLE LKA AD + +   +AL  SIQG+I AP   +GETLE E L AGSF  E          ++  EVGN  +KL+GG+QYHRVLREFN A R +  P +
Sbjct:   17 QDFQKPFDAPAVVVVGHQSSGKSALIEALMGFQFNQVGGGTKTRRPVALRMQYNPRCSHPRCFLQGDDGIERPKSLTEIQEYIESENKRLEKDPVRSFDPREINVRMEYKYCPNMILIDTPGLISAPRIRKDGSANVQQRALLQAAREAERLVVSKMKCQDYIILCVEDTMDWKHGMTREVVQKADPDLSRTVIVNTKLDTKLPQFGTPTDVADFISARIVERLSPHKLGGPFYTSVPSGRV-RHLESQNEDDFLFEDDDEFVAACAEKEDSDRELVWNRVKRLGNKEGKSPKSMLPKVGISRLRGFLERRVDECYRRNVAKIVPLLKAEYIAAERRLKVCERELEAISLEKLKAGADAFCDDFCKALKDSIQGSIIAPAGSYGETLEQENLAAGSFAGEFGCRFS--CHLLVAEVGNTQHKLYGGSQYHRVLREFNLATRCLRLPTI 461          
BLAST of mRNA_H-elongata_contig8548.16133.1 vs. uniprot
Match: A0A7S2R4H5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R4H5_9STRA)

HSP 1 Score: 494 bits (1271), Expect = 6.690e-163
Identity = 267/470 (56.81%), Postives = 329/470 (70.00%), Query Frame = 1
Query:    1 QDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPDCDQPRCYLTLEDGKEEPRSLQEIQAYIESENRRLERDPVRSFDSREINIRMEYRFCPNMILIDTPGLIHAP---SGRT----LNAEQRSLTAAAREAENLVVQKMRCQDYVILCVEDTTDWKHATTRNVVAQVDPDMSRTVLVTTKLDTKLPQFGASEDLEDFVMAPQMQRVYRCMLGGPFFTTVPSGRVGRTR-----------ESAYFSNEAFVQAVRRSERDDQTFVATKLGPQA---------------APACLPRVGVSRLRRFLERRVEECYRRNVARIVPQLQHEMAKAEGRLLATEQEIKALSLESLKASADEYREHLSRALSRSIQGTIKAPPEKFGETLEAEQLRAGSFLD----EADVDPDEWDRMMEIEVGNGGNKLFGGAQYHRVLREFNFAIRHMNAPEV 1299
            QDF KPFD+PAV+VVGHQ+SGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNP C +P C+L  +DG E P+SL EIQ YI  EN RLERDPVRSFDSREIN+RMEY++CPNMILIDTPGLI AP    GR      N +QR+L  +AREAE LVV+KMRCQDY+ILCVEDT DWKH  TR VV + DPD+SRTV+V TKLDTK+PQFG  +DL +F+ A  ++++    LGGPFFTTVPSGRVGR             E  + +++ FV A   +E  D++ V  KL                   A A +PR+G+SRLR FLERRV++CYRRNVA+IVP LQ E A A  RL A ++E++ALS+E LKA AD + +    AL  +IQG++ AP   +GE  E E+L +GSF +       V    WDR++E EVGN  ++L+GGAQYHR +REFN A + +  P +
Sbjct:  189 QDFRKPFDAPAVVVVGHQSSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPRCSEPNCFLQGDDGTERPKSLAEIQEYINDENTRLERDPVRSFDSREINVRMEYKYCPNMILIDTPGLIAAPRVPKGRNGAGAPNMQQRALQKSAREAERLVVEKMRCQDYIILCVEDTMDWKHGATREVVQKADPDLSRTVIVNTKLDTKVPQFGTPKDLVEFLQAGIIEKISPHKLGGPFFTTVPSGRVGRPLGLLSDEEFDEYEYDFDNDDDFVNACMENEESDRSVVWEKLKKLKRLRSATANEDSDILPANALVPRIGISRLRGFLERRVDDCYRRNVAKIVPLLQAEHATAAKRLEACDKELEALSVERLKAGADVFCDEFCTALKDAIQGSVIAPSSVYGENAEQERLASGSFAEIQGSPLAVSDRTWDRLVENEVGNSNHRLYGGAQYHRTMREFNLAAKCLRLPAI 658          
BLAST of mRNA_H-elongata_contig8548.16133.1 vs. uniprot
Match: A0A7S1BLX2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BLX2_9STRA)

HSP 1 Score: 490 bits (1261), Expect = 2.300e-161
Identity = 263/454 (57.93%), Postives = 322/454 (70.93%), Query Frame = 1
Query:    1 QDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALRMQYNPDCDQPRCYLTLEDGKEEPRSLQEIQAYIESENRRLERDPVRSFDSREINIRMEYRFCPNMILIDTPGLIHAPSG---RTLNAEQRSLTAAAREAENLVVQKMRCQDYVILCVEDTTDWKHATTRNVVAQVDPDMSRTVLVTTKLDTKLPQFGASEDLEDFVMAPQMQRVYRCMLGGPFFTTVPSGRVGRTRES---------AYFSNEAFVQAVRRSERDDQTFVATKLG---PQAAPACLPRVGVSRLRRFLERRVEECYRRNVARIVPQLQHEMAKAEGRLLATEQEIKALSLESLKASADEYREHLSRALSRSIQGTIKAPPEKFGETLEAE--QLRAGSFLDEAD----VDPDEWDRMMEIEVGNGGNKLFGGAQYHRVLREFNFAIRHMNAPEV 1299
            QDF KPFD+PAVLVVGHQ+SGKSALIEALMGFQFNQVGGGTKTRRP+ALRMQYNP C  P C+L  +DG E P S+  +Q YIESENRRLE+DP+R FDSREIN+RMEY++CPNMILIDTPGLI A  G      N E R+L A+ARE E LVVQKMRCQDY+ILCVEDT DWKH +TR +V + DPD+SRTV+V TKLDTK+PQFG+++D+EDF+ A  + R+    LGGPFFT+VPSGRV ++ +          A+ ++EAFV A + +E  DQ  +  +L    P AA   LP VG+S LR FLE RV +CYRRNVA+IVP L  E    E RL   E ++KALS+E LKA AD Y +    +L  +I+G+I APP  +GE+L  E      GSF D  +    V    WDR++  EVGN  +KL+GGAQYHRVLREF  A R +  P +
Sbjct:  158 QDFRKPFDAPAVLVVGHQSSGKSALIEALMGFQFNQVGGGTKTRRPVALRMQYNPRCSTPNCFLRGDDGMERPASMSAVQEYIESENRRLEQDPIRCFDSREINVRMEYKYCPNMILIDTPGLIAAQGGSGRHPNNEEARALAASAREVEKLVVQKMRCQDYLILCVEDTMDWKHGSTREIVQRADPDLSRTVVVNTKLDTKVPQFGSTDDMEDFLRAQILDRLAPHKLGGPFFTSVPSGRVSKSLDDDNDGYEDGLAFATDEAFVDACKDNEESDQIVIRRRLKSSHPSAAEDLLPFVGLSYLRNFLEHRVYQCYRRNVAKIVPLLAAEREACEARLRRCEADLKALSVERLKAGADAYCDAFCASLREAIKGSILAPPSLYGESLGQEWSNCGVGSFRDVHECPLAVSQRAWDRLLVEEVGNCRHKLYGGAQYHRVLREFALATRCLRLPTI 611          
BLAST of mRNA_H-elongata_contig8548.16133.1 vs. uniprot
Match: A0A482SB77_9ARCH (Dynamin-type G domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SB77_9ARCH)

HSP 1 Score: 469 bits (1207), Expect = 2.410e-159
Identity = 234/398 (58.79%), Postives = 309/398 (77.64%), Query Frame = 1
Query:  109 VGGGTKTRRPIALRMQYNPDCDQPRCYLTLEDGKEEPRSLQEIQAYIESENRRLERDPVRSFDSREINIRMEYRFCPNMILIDTPGLIHAPSGRTLNAEQRSLTAAAREAENLVVQKMRCQDYVILCVEDTTDWKHATTRNVVAQVDPDMSRTVLVTTKLDTKLPQFGASEDLEDFVMAPQMQRVYRCMLGGPFFTTVPSGRVGRTRESAYFSNEAFVQAVRRSERDDQTFVATKLGPQAAPACLPRVGVSRLRRFLERRVEECYRRNVARIVPQLQHEMAKAEGRLLATEQEIKALSLESLKASADEYREHLSRALSRSIQGTIKAPPEKFGETLEAEQLRAGSFLDEADVDPDE-WDRMMEIEVGNGGNKLFGGAQYHRVLREFNFAIRHMNAPEV 1299
            +GGGTKTRRP+ALRMQYNP+C +P C+LTLE+GKEE RSL +IQ+YIE EN+RLERD  RSFDSREINIRMEY++CPNMI+IDTPG+IH P GR L  +QR++  AAREAE LV+ K++C DY+ILCVEDTTDWKHATTRNVV Q DP ++R+VLVTTKLDTKLPQF   EDLEDF+ AP ++ ++  +LGGPF+T+VPSGRVG +R+  + +NE FV A+RR+E+ D+++  +KLG   A   L  VGVS+LR FLE R+E+ YRRNVA+IVP LQ E+  ++ +L   ++E+ +LS+E L+ +A++YRE  ++ LS  IQGTI+A PE+FGETLE E ++ G+FL E D    E + R++  E+ N   KL GGAQY+R L+EF  A++H  AP +
Sbjct:    1 MGGGTKTRRPVALRMQYNPNCHEPLCFLTLENGKEEQRSLTDIQSYIELENKRLERDATRSFDSREINIRMEYKYCPNMIVIDTPGMIHPPKGRQLTPQQRAIQHAAREAEALVLSKIKCPDYIILCVEDTTDWKHATTRNVVMQADPQLTRSVLVTTKLDTKLPQFSEPEDLEDFLKAPLIRTLFSQLLGGPFYTSVPSGRVGNSRD--FDTNEDFVSALRRAEKRDRSYTLSKLGAMKAKPVLHTVGVSKLRSFLEARIEDSYRRNVAKIVPLLQTELKVSQSKLAQIDEELASLSMERLRDTANKYREKFAKELSNIIQGTIRANPEEFGETLEMEIMKGGAFLSEQDYSQSEIYQRLISHEIDNSQYKLLGGAQYYRTLKEFCLAVKHGVAPAI 396          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8548.16133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDP8_ECTSI4.130e-27288.91ARC5, dynamin-related protein involved in plastid ... [more]
A0A835YPI8_9STRA7.440e-23877.14Dynamin-type G domain-containing protein n=1 Tax=T... [more]
A0A835Z9B7_9STRA1.000e-22073.48Dynamin-type G domain-containing protein n=1 Tax=T... [more]
A0A4D9DCK2_9STRA1.550e-19265.44Dynamin-type G domain-containing protein n=2 Tax=M... [more]
A0A7S3UW64_HETAK6.130e-18062.85Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A6H5JQ42_9PHAE3.020e-16885.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B8C5C4_THAPS5.830e-16660.04Dynamin-type G domain-containing protein (Fragment... [more]
A0A7S2R4H5_9STRA6.690e-16356.81Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S1BLX2_9STRA2.300e-16157.93Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A482SB77_9ARCH2.410e-15958.79Dynamin-type G domain-containing protein (Fragment... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8548contigH-elongata_contig8548:210..6595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score777.7
Seed ortholog evalue2.8e-222
Seed eggNOG ortholog2880.D8LDP8
Preferred nameARC5
GOsGO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0006996,GO:0007031,GO:0007623,GO:0008017,GO:0008092,GO:0008150,GO:0009507,GO:0009526,GO:0009527,GO:0009536,GO:0009657,GO:0009658,GO:0009707,GO:0009941,GO:0009987,GO:0010020,GO:0015631,GO:0016020,GO:0016043,GO:0016462,GO:0016559,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019867,GO:0031090,GO:0031967,GO:0031968,GO:0031969,GO:0031975,GO:0042170,GO:0042579,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043572,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048285,GO:0048511,GO:0071840,GO:0098588,GO:0098805
EggNOG free text desc.mitochondrial fission
EggNOG OGsCOG0699@1,KOG0446@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionARC5, dynamin-related protein involved in plastid division
Ec32 orthologEc-19_001480.2
Exons10
Model size1314
Cds size1314
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8548.16133.1prot_H-elongata_contig8548.16133.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8548 210..6595 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931257.7038474-CDS-H-elongata_contig8548:209..3321622931257.7038474-CDS-H-elongata_contig8548:209..332Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8548 210..332 -
1691679762.6191607-CDS-H-elongata_contig8548:209..3321691679762.6191607-CDS-H-elongata_contig8548:209..332Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8548 210..332 -
1622931257.7187188-CDS-H-elongata_contig8548:980..10851622931257.7187188-CDS-H-elongata_contig8548:980..1085Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8548 981..1085 -
1691679762.630891-CDS-H-elongata_contig8548:980..10851691679762.630891-CDS-H-elongata_contig8548:980..1085Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8548 981..1085 -
1622931257.735486-CDS-H-elongata_contig8548:2080..21791622931257.735486-CDS-H-elongata_contig8548:2080..2179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8548 2081..2179 -
1691679762.6398146-CDS-H-elongata_contig8548:2080..21791691679762.6398146-CDS-H-elongata_contig8548:2080..2179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8548 2081..2179 -
1622931257.7512543-CDS-H-elongata_contig8548:2785..29771622931257.7512543-CDS-H-elongata_contig8548:2785..2977Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8548 2786..2977 -
1691679762.6494951-CDS-H-elongata_contig8548:2785..29771691679762.6494951-CDS-H-elongata_contig8548:2785..2977Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8548 2786..2977 -
1622931257.7911174-CDS-H-elongata_contig8548:3447..36011622931257.7911174-CDS-H-elongata_contig8548:3447..3601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8548 3448..3601 -
1691679762.6591122-CDS-H-elongata_contig8548:3447..36011691679762.6591122-CDS-H-elongata_contig8548:3447..3601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8548 3448..3601 -
1622931257.806658-CDS-H-elongata_contig8548:4046..41441622931257.806658-CDS-H-elongata_contig8548:4046..4144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8548 4047..4144 -
1691679762.6682127-CDS-H-elongata_contig8548:4046..41441691679762.6682127-CDS-H-elongata_contig8548:4046..4144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8548 4047..4144 -
1622931257.820923-CDS-H-elongata_contig8548:4739..48591622931257.820923-CDS-H-elongata_contig8548:4739..4859Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8548 4740..4859 -
1691679762.6773257-CDS-H-elongata_contig8548:4739..48591691679762.6773257-CDS-H-elongata_contig8548:4739..4859Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8548 4740..4859 -
1622931257.8385766-CDS-H-elongata_contig8548:5233..54161622931257.8385766-CDS-H-elongata_contig8548:5233..5416Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8548 5234..5416 -
1691679762.6870573-CDS-H-elongata_contig8548:5233..54161691679762.6870573-CDS-H-elongata_contig8548:5233..5416Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8548 5234..5416 -
1622931257.864396-CDS-H-elongata_contig8548:5944..60761622931257.864396-CDS-H-elongata_contig8548:5944..6076Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8548 5945..6076 -
1691679762.700617-CDS-H-elongata_contig8548:5944..60761691679762.700617-CDS-H-elongata_contig8548:5944..6076Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8548 5945..6076 -
1622931257.8781075-CDS-H-elongata_contig8548:6487..65951622931257.8781075-CDS-H-elongata_contig8548:6487..6595Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8548 6488..6595 -
1691679762.711283-CDS-H-elongata_contig8548:6487..65951691679762.711283-CDS-H-elongata_contig8548:6487..6595Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8548 6488..6595 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8548.16133.1

>prot_H-elongata_contig8548.16133.1 ID=prot_H-elongata_contig8548.16133.1|Name=mRNA_H-elongata_contig8548.16133.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=438bp
QDFHKPFDSPAVLVVGHQTSGKSALIEALMGFQFNQVGGGTKTRRPIALR
MQYNPDCDQPRCYLTLEDGKEEPRSLQEIQAYIESENRRLERDPVRSFDS
REINIRMEYRFCPNMILIDTPGLIHAPSGRTLNAEQRSLTAAAREAENLV
VQKMRCQDYVILCVEDTTDWKHATTRNVVAQVDPDMSRTVLVTTKLDTKL
PQFGASEDLEDFVMAPQMQRVYRCMLGGPFFTTVPSGRVGRTRESAYFSN
EAFVQAVRRSERDDQTFVATKLGPQAAPACLPRVGVSRLRRFLERRVEEC
YRRNVARIVPQLQHEMAKAEGRLLATEQEIKALSLESLKASADEYREHLS
RALSRSIQGTIKAPPEKFGETLEAEQLRAGSFLDEADVDPDEWDRMMEIE
VGNGGNKLFGGAQYHRVLREFNFAIRHMNAPEVYSIK*
back to top

mRNA from alignment at H-elongata_contig8548:210..6595-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8548.16133.1 ID=mRNA_H-elongata_contig8548.16133.1|Name=mRNA_H-elongata_contig8548.16133.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6386bp|location=Sequence derived from alignment at H-elongata_contig8548:210..6595- (Himanthalia elongata Himel1 dioecious)
CAGGACTTTCATAAGCCGTTCGACTCTCCAGCGGTGCTTGTCGTCGGCCA CCAGACTAGTGGCAAGTCGGCACTGATCGAGGCGTTGATGGGGTTTCAGT TTAACCAGGTGTGAATAGATGAAGGGGGGGTAGGAAATAAGTGGAAACAC CCCACGCTCGTGCACGGCGAATGACAACGCTGAGCGCATCTTTCTTGCTA CGGTGCTGTGGGCCATTGGTATGATCTCTCTATATAGTCATCTCTCGCTC TAGCCTTTTCGTAAGGGTCCGTTCAGAGACAATGCTGTGCTACGGTGTTC GCCTCGTCTCCTCCTCCGATAGAAATAATCTTACGCAGTCTTATGCCATG ACCAAGCGTTCAAATGTGTTTTTATTAGATATTTGTTAGATATACTAGTC ATAGCCCCCATTGCTTCATCGCTTGTCTGTTTGTATGATACGTGTGTGTG TGTCTGTATTTCGTGCATCCCTGGGCATGGACATTGGCGCGGGGTTGTTT GTCGATGTGCCTTTGAAAGGTGGGGGGTGGTACCAAGACGCGGCGTCCGA TCGCGCTGCGCATGCAGTACAACCCCGACTGTGACCAGCCCAGGTGCTAC TTGACGCTGGAGGACGGAAAAGAAGAACCGCGCTCGCTGCAGGAAATCCA GGTGCGCTTTGGAGGCAGGTCGTCTCTATTAATAGTGCACTAGGGAGTCG TAGTTTTTTCTCTCTGACTTAAAAGGGGAGGAGGGGCATTCGCCGTTGCT CTCTTTTCGTCATCGAGTTGCAATCGGTGCTTGTTGGGAGACTGACCGTG GATACGCGCGGTGGAAATTTGGGGGCCGTTTTTTTACTCGAGCTTGAATT GTTCCGGCAGTTCGTTCGTGGGACGGATTGTCGTCGCGCTTCGATGCGCT GTTGTGGGGTTGGATGCGGGAGGCAGGCATGTCTCGAACTCGGTTCCGCG AAGACCAACCAAGACGGCTCAATTACTGCACAGGCAAATTGAGGGGGGGT GGGGGTATTTACGGAAAGACGAGAATATTCCAACGGTGGACCCTGTCCCT GGAATCTCCCGTAAACTGCTGATTTGTCCCGTATTAGTTTTCATCTCTGG AGTTAAAAAATAATTCTTCCCTTCCGCCTTTTCTATTTTTTTTCTTGGTT TCTTTCACTTGGACTCTCCCCCGAGGCAGGCGTACATCGAGTCTGAAAAC CGCCGTCTCGAAAGGGACCCCGTGAGGTCTTTCGACTCCCGAGAGATCAA CATCCGCATGGAATACCGCTTCTGTCCCAATATGATACTCATCGACACCC CGGGGTTGATTCACGCCCCGTCGGGGAGGACCCTCAACGCGGAGCAGCGG TCGCTCACCGCGGTAAGGGCTTGTTTCGCGTCGTAGGGAGGGGGGGTGGG GGGGAGAGTCAGAGGAGGAGGATCGGTGTGGGGTTGGGTGGGAGGGGGTT TTCGTACAAGATTTTAAAGATGTCGCACCCGCTGCCGATCGAGCGCTGTC TTGGTAAAATCGCGAGATGGTTAAGATTAACGATGGTTGTTGCGCATGTC ATCATCTCGCTTTTGCCTTCCACCGAAGGTCATGTGGTTGGTGATGTATT CATATCTAGATGGCTCTCGATCGGAATGCCAAGAGCCGAGGGGCCATACT GGGCTTTTGCCCATGAAAAACGATAATTTCTTTGAAAACCAAAACAAGAC GCGATGTCCAACGCGTGTATCGCCGGAACGAATCAGGCGGCTAGGGAGGC AGAGAACCTGGTGGTACAAAAGATGCGGTGTCAGGACTACGTCATCCTCT GCGTAGAGGACACGACGGACTGGAAGCACGCAACAACACGCAACGTGGTG GCACAGGTATTTGCTGTGGCATATTACCGCGCACGTTGCTTATGTTCTGC TTATGTTCATTATAATAGTAGTATAACCTTACTGAAGGAAAAAAGCCTCG CTTGATGAACCCTGTAATAAAAACGCCTTGTCTCGATCACTCCTGTAGGA AAAACACCTCGCCTATATTACCTCTCTCGAAAACCGTTACTGAAACCAGG GTTGAATGGGTATGCAGTACACAATCAACTGTGTAAACTATTGAGTGTCC CTTCCACGACCTTGCCTTACGAGCGGGTTACTGTGCCATCTCTTCTTGAG GTTGAAATTGCCGCTGCTGTTTCGTGCGTCTTGAAAAGCTTGCCTGACAT CCCACGATGCGGTAGACTTGTGGAACGTTTTCGGCGCGAGAATGAGCAAA ACATTTCTGCCGTGCGGCTGCGTGAAATGGGCTGAATAGTTTTGAGTGCT CGGGAGAGAGAGAGAGAGAGAAACCCAGTCGGCACCCTTCCAATTTTTTC CCCCAACCGTCTCTAAAGGTCATTTCCCCTCTTGAAGGTTTCCGTTTCTT CATCGTCAAATGTGTTACTTGTCAATCTGCTACCCACCTCACCCGGGAAA GGTGGACCCCGACATGTCCCGCACGGTGCTGGTGACGACCAAGCTAGACA CTAAGCTGCCGCAGTTCGGCGCCAGCGAAGATCTCGAGGACTTCGTCATG TAGGTCGTCGCGCTCCATATTATTTTTTCCTCCGCGCCGCGGTCGTTTTG ACGCGACCTAACTGCGTAGCACGGGCGCTCTGCGCCCTTTTTTCCGTATC GCACGGCCAGCACACCGCTCCCGCGCTCGACTCTAGTATAAAATGTCTCT ACGTAGCGAAACGCGACGGTGCCGTGATGCTAACATAGATTCGGTACTGC GGCGTGTCGAGATGTTTTTCGCTGCTTTCTCTGATCCGCTGTTTTCCGAA AGAGGCAGCCCGCAAGGGTTTTCCATTGCCGATGTTGCCTCCGATGTGCC TTACACACATGAAAGCAACCCTCCCGCTTCAGCAGTATTTTTAAGCCCCC AGACCTCCCTTTTATTCCCTCTCCTCTCGCGTCGTCCGGATGGGATGTCG GGTGGGATGTTGTGTTCCCGTCCAACGCGTCGTGTTGACAACAGGGCGCC CCAGATGCAACGCGTGTACCGTTGCATGCTCGGCGGGCCGTTTTTCACGA CGGTACCCTCCGGTCGGGTCGGACGAACCCGCGAGTCGGCGTACTTCTCC AACGAAGCGTTTGTTCAGGCGGTGCGCCGCTCGGAGCGCGATGACCAGGT GCCACCCCCTTCCTACACACACACACACCACCCCATCCGCAAACGCTTTG TATGAGGTACATTATTGGTGTGCGCCCCTCAGGGAAGTTTGCGCGGCGTG CTCTCAGATAGGCGAGCAGGCAGACTTTCTCGTAGGCGGGAAGAAATAGT GGGTGTTGCCGCAGAGCTAGATGTAGACCAGGCTTTCGATAGCGGTGATG GTACCGGTGCTGTCAAGGGCGCCGAGTTAGAACGCATTGTTGTGGCGAAT GGCCAGTGTATTTTTCTGGGAGGAGTGGGGGGGGGGTACAGGAAGCAAAC ACCGTAGGCAGCAATATAAGTCTTGGATTAAGTCGGATCACCCCGCGCGT CGCACACAAACGTTCCCCGCAGCAGCATCATAAAAGTAGCGCAGCAGACT ACCCCCCCCTCAATCTTGACCTGCAACTCCTCAACTATTATCTCTTCCTT CTGTCGGATTTATGGCAGACGTTTGTCGCGACCAAGCTCGGCCCTCAGGC GGCGCCCGCCTGTCTCCCTAGAGTGGGCGTGTCGCGTCTGCGCCGGTTCC TGGAACGGCGCGTGGAGGAGTGCTACCGCAGAAACGTTGCGCGGATCGTT CCGCAACTGCAGCACGAGATGGCGAAGGCGGAGGGGCGGCTGCTCGCCAC GGAGCAGGAGGTGGGTTTGGCCAGCTCCTATTATCCGCAACAGCCGCTCG TGCGAGCTTGCGGGCTCGATACCGAAGCGAGGCCCGTTGTGACTATGTGT TTCAGGTAGTTTTCTGTGGGAGGGGGGAGGGTGGATAGAACTAGCGTGCG TGCTTTCTTCTTTTTTTTAGAGAGGTTTCTTCATGCTTTCGTTTTTGCTT AATTTGAAAGTCGAAACTCGTTTGCTTTAGTAATATCGCCTTCCAGGAAA TGACCACTAGAGAGTTCGTGCGCCACCGACCCCCCCCCCCTCCCCCCCCT CCCCGCGCGCGCTCGTCGAGGGCAAGCAATTATTTAGAATAACAAGGAGG ATTGTTGAAGAGGCTGGTGTGAGATAACTAACTATAGCTGGTGGTACGGG GATCGCCCTAACCAACCCGATGCCTTCGCTAGCCAAGACGGAGTCGAGAG ACAAAATAACAAATAACGTGTATCAGCATGTTACTCTTTTTTTTTTTTTT CAAAAGCCCACGAAGGTTGAATGCGGAAAATCTTTGGATTTGGGTGGAGC AACGGTTGAAGCCTAGCTGATACACTTCCTCTGACTCTGTCGTGGCCGTC ATCGTTTTTTAACCAGATCAAAGCGCTTTCTCTGGAAAGCTTGAAGGCGT CGGCGGACGAGTACCGCGAGCATTTGTCGCGCGCGCTCTCGCGGTCTATC CAAGGCACGATCAAGGTGCTGTGCAGCAATGTGCTATAGTATCCGTCGTA GTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTG TGGCGCTTTCGGGTCTTCCCTGGTGGTGCACGTACCGGGGATGACGTCAC CAATATGCGACTCATGGACCCTCTTGCCTTATACGTAACCCACAAGTGGG ATTGGCGTAGATTATAGGTTTATGTATGTCTGACTCAGTTGTGTCACCGT AGTTGTTTAATTACGATACTGTTATTATATTGATATTAGCATTGGAAGGA CGATACGTAGCAAGTTAAAACCAACCAATCAATCGATCATAGTCAAGTCT CCGTCAAATGTGATCGGTCTCTTACCCCCCCCCCCTCCCCCCCCCTCCTA TGACCCGATGACAAGCACGGGGAGAAAGACGTAAAGTGTAAAGGAATGAA AATGGTCTCCGGTAGTTCCAGGTTTTGAGAGTTTAGGGGGTTGGGCGGTT CCCCCTCCAAAATCTATACAACATGTATATCAATTTATATTTTGTGTTAA AATTTTTAAATTGTGCGTTTTAATGAAGGGAGAGGGGGGGGGGTAGAAAA AAGCCTGTTTGTTCAGGGTTTCGCGGCTGTTGGCTCTCATTTGAACATCT ACGGGTATTTGCCCGTTTCCGTCTTGAAATAGTTAGCGAGTTTCCAATTA TTGCTGTTGCCGTTGCGGTTGCGGGGGGGGTGGTCCGTGACGCGATGTAC GGCGTTTAGGGATTTATGAGCTAATAAACACTGGGCAACGCTTGTGTGTG TGTGTGTGTGTTGGTTTTTTCCTTTCATATATCCGTTGATCTGAGGGAAT GTATATCCGTTGGTCTGCTACGTCCACGCCACGCCAAAAAAAATAACAAA ATTATGAAAGGCTCCCCCAGAAAAGTTCGGCGAGACCCTGGAAGCGGAGC AGCTGAGAGCTGGATCGTTTCTCGACGAGGCCGACGTCGACCCGGATGAG TGGGATCGTATGATGGTGAGAGAGTGAGCGAGTGATTGATGATTGATCCG CGCGAGTCGCTTGTCAAAATCTTGGAACTACTGAGGCAAGGTATCAGGTA TCAGGTCTCTTCCGTGTCTATACGATAGTATTTTTGGATACATACCGCCC AAGTACAAATACATAAATGTGTATTTATTTTGTAAAAATTCTGACGAGTG GGGGGCGGGGCAGATTCAATAAAAAAATGCTCGTTCCCGGCGTGGCACTA TATCCTCTTTTTTTCTCTCACTCTATCCCCTTTCTTTTCTTCTCTTTTCT ATGCTTTTATCCCTTCGGATACTATACCGAGGATGCTGGACAAATTATAC CACACAGAATTATGGATTGTAACACCCTAATGAATCAACCGAGCCAATAT TTCTCTCTCTTTCTCTGTATCTCTATCCTTCCCTCTCTCTGGCATAGTTG TCGTCGGTTGACAGGTTCTTGACAGTGCGTCAAGACGTCTTTTTGGAAAA TATACTAGTTTTAGTGTAGGGACGTGTCCTTGACGCGTCTCTCAAGGGGT TCAACTCTTGTCAACCGACAACTTTACCCTCTGGTGTGCGCCGTGTCCTA ATATTAACCAATTCGTCTCGCCGCCCCCTGTACCCCCTAAACGGGAACGG AACGGAACGGCAGGAAATCGAGGTCGGTAACGGAGGCAACAAGCTGTTCG GAGGCGCTCAGTACCACCGAGTCCTTCGCGAGTTCAACTTCGCCATCAGG CACATGAACGCCCCTGAGGTATATAGCATAAAATAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig8548:210..6595-

>mRNA_H-elongata_contig8548.16133.1 ID=mRNA_H-elongata_contig8548.16133.1|Name=mRNA_H-elongata_contig8548.16133.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2628bp|location=Sequence derived from alignment at H-elongata_contig8548:210..6595- (Himanthalia elongata Himel1 dioecious)
CAGGACTTTCATAAGCCGTTCGACTCTCCAGCGGTGCTTGTCGTCGGCCA
CCAGACTAGTGGCAAGTCGGCACTGATCGAGGCGTTGATGGGGTTTCAGT
TTAACCAGCAGGACTTTCATAAGCCGTTCGACTCTCCAGCGGTGCTTGTC
GTCGGCCACCAGACTAGTGGCAAGTCGGCACTGATCGAGGCGTTGATGGG
GTTTCAGTTTAACCAGGTGGGGGGTGGTACCAAGACGCGGCGTCCGATCG
CGCTGCGCATGCAGTACAACCCCGACTGTGACCAGCCCAGGTGCTACTTG
ACGCTGGAGGACGGAAAAGAAGAACCGCGCTCGCTGCAGGAAATCCAGGT
GGGGGGTGGTACCAAGACGCGGCGTCCGATCGCGCTGCGCATGCAGTACA
ACCCCGACTGTGACCAGCCCAGGTGCTACTTGACGCTGGAGGACGGAAAA
GAAGAACCGCGCTCGCTGCAGGAAATCCAGGCGTACATCGAGTCTGAAAA
CCGCCGTCTCGAAAGGGACCCCGTGAGGTCTTTCGACTCCCGAGAGATCA
ACATCCGCATGGAATACCGCTTCTGTCCCAATATGATACTCATCGACACC
CCGGGGTTGATTCACGCCCCGTCGGGGAGGACCCTCAACGCGGAGCAGCG
GTCGCTCACCGCGGCGTACATCGAGTCTGAAAACCGCCGTCTCGAAAGGG
ACCCCGTGAGGTCTTTCGACTCCCGAGAGATCAACATCCGCATGGAATAC
CGCTTCTGTCCCAATATGATACTCATCGACACCCCGGGGTTGATTCACGC
CCCGTCGGGGAGGACCCTCAACGCGGAGCAGCGGTCGCTCACCGCGGCGG
CTAGGGAGGCAGAGAACCTGGTGGTACAAAAGATGCGGTGTCAGGACTAC
GTCATCCTCTGCGTAGAGGACACGACGGACTGGAAGCACGCAACAACACG
CAACGTGGTGGCACAGGCGGCTAGGGAGGCAGAGAACCTGGTGGTACAAA
AGATGCGGTGTCAGGACTACGTCATCCTCTGCGTAGAGGACACGACGGAC
TGGAAGCACGCAACAACACGCAACGTGGTGGCACAGGTGGACCCCGACAT
GTCCCGCACGGTGCTGGTGACGACCAAGCTAGACACTAAGCTGCCGCAGT
TCGGCGCCAGCGAAGATCTCGAGGACTTCGTCATGTGGACCCCGACATGT
CCCGCACGGTGCTGGTGACGACCAAGCTAGACACTAAGCTGCCGCAGTTC
GGCGCCAGCGAAGATCTCGAGGACTTCGTCATGGCGCCCCAGATGCAACG
CGTGTACCGTTGCATGCTCGGCGGGCCGTTTTTCACGACGGTACCCTCCG
GTCGGGTCGGACGAACCCGCGAGTCGGCGTACTTCTCCAACGAAGCGTTT
GTTCAGGCGGTGCGCCGCTCGGAGCGCGATGACCAGGGCGCCCCAGATGC
AACGCGTGTACCGTTGCATGCTCGGCGGGCCGTTTTTCACGACGGTACCC
TCCGGTCGGGTCGGACGAACCCGCGAGTCGGCGTACTTCTCCAACGAAGC
GTTTGTTCAGGCGGTGCGCCGCTCGGAGCGCGATGACCAGACGTTTGTCG
CGACCAAGCTCGGCCCTCAGGCGGCGCCCGCCTGTCTCCCTAGAGTGGGC
GTGTCGCGTCTGCGCCGGTTCCTGGAACGGCGCGTGGAGGAGTGCTACCG
CAGAAACGTTGCGCGGATCGTTCCGCAACTGCAGCACGAGATGGCGAAGG
CGGAGGGGCGGCTGCTCGCCACGGAGCAGGAGACGTTTGTCGCGACCAAG
CTCGGCCCTCAGGCGGCGCCCGCCTGTCTCCCTAGAGTGGGCGTGTCGCG
TCTGCGCCGGTTCCTGGAACGGCGCGTGGAGGAGTGCTACCGCAGAAACG
TTGCGCGGATCGTTCCGCAACTGCAGCACGAGATGGCGAAGGCGGAGGGG
CGGCTGCTCGCCACGGAGCAGGAGATCAAAGCGCTTTCTCTGGAAAGCTT
GAAGGCGTCGGCGGACGAGTACCGCGAGCATTTGTCGCGCGCGCTCTCGC
GGTCTATCCAAGGCACGATCAAGATCAAAGCGCTTTCTCTGGAAAGCTTG
AAGGCGTCGGCGGACGAGTACCGCGAGCATTTGTCGCGCGCGCTCTCGCG
GTCTATCCAAGGCACGATCAAGGCTCCCCCAGAAAAGTTCGGCGAGACCC
TGGAAGCGGAGCAGCTGAGAGCTGGATCGTTTCTCGACGAGGCCGACGTC
GACCCGGATGAGTGGGATCGTATGATGGCTCCCCCAGAAAAGTTCGGCGA
GACCCTGGAAGCGGAGCAGCTGAGAGCTGGATCGTTTCTCGACGAGGCCG
ACGTCGACCCGGATGAGTGGGATCGTATGATGGAAATCGAGGTCGGTAAC
GGAGGCAACAAGCTGTTCGGAGGCGCTCAGTACCACCGAGTCCTTCGCGA
GTTCAACTTCGCCATCAGGCACATGAACGCCCCTGAGGTATATAGCATAA
AATAGGAAATCGAGGTCGGTAACGGAGGCAACAAGCTGTTCGGAGGCGCT
CAGTACCACCGAGTCCTTCGCGAGTTCAACTTCGCCATCAGGCACATGAA
CGCCCCTGAGGTATATAGCATAAAATAG
back to top