mRNA_H-elongata_contig85473.16132.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85473.16132.1
Unique NamemRNA_H-elongata_contig85473.16132.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig85473.16132.1 vs. uniprot
Match: D8LQD4_ECTSI (G-patch domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQD4_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.850e-19
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 LFLQAVLPKLTRGVTEWNPRTDTVAIHTWVHPWLPLLGSRL 123
            L  QA+LPKLTRGVTEWNPRTDTVAIHTW+HPWLPLLGSRL
Sbjct:  748 LLEQAILPKLTRGVTEWNPRTDTVAIHTWIHPWLPLLGSRL 788
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BLAST of mRNA_H-elongata_contig85473.16132.1 vs. uniprot
Match: A0A6H5KWE3_9PHAE (GCFC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWE3_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.860e-19
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 LFLQAVLPKLTRGVTEWNPRTDTVAIHTWVHPWLPLLGSRL 123
            L  QA+LPKLTRGVTEWNPRTDTVAIHTW+HPWLPLLGSRL
Sbjct:  318 LLEQAILPKLTRGVTEWNPRTDTVAIHTWIHPWLPLLGSRL 358
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BLAST of mRNA_H-elongata_contig85473.16132.1 vs. uniprot
Match: A0A834XRV6_9HYME (G-patch domain-containing protein n=1 Tax=Aphidius gifuensis TaxID=684658 RepID=A0A834XRV6_9HYME)

HSP 1 Score: 70.5 bits (171), Expect = 4.310e-13
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   16 VLPKLTRGVTEWNPRTDTVAIHTWVHPWLPLLGSRL 123
            +LPKLT  V EWNP TDTV IHTW+HPWLPLLG+R+
Sbjct:  539 ILPKLTLAVEEWNPLTDTVPIHTWIHPWLPLLGNRM 574
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BLAST of mRNA_H-elongata_contig85473.16132.1 vs. uniprot
Match: A0A6J0B8A1_NEOLC (septin-interacting protein 1 n=6 Tax=Tenthredinoidea TaxID=85772 RepID=A0A6J0B8A1_NEOLC)

HSP 1 Score: 70.1 bits (170), Expect = 5.890e-13
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   16 VLPKLTRGVTEWNPRTDTVAIHTWVHPWLPLLGSRL 123
            VLPKLT  V EWNP TDTV IHTW+HPWLPL+G+RL
Sbjct:  527 VLPKLTLEVEEWNPLTDTVPIHTWIHPWLPLIGNRL 562
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BLAST of mRNA_H-elongata_contig85473.16132.1 vs. uniprot
Match: A0A6J1SDC1_FRAOC (tuftelin-interacting protein 11 isoform X1 n=2 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1SDC1_FRAOC)

HSP 1 Score: 69.3 bits (168), Expect = 1.100e-12
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   10 QAVLPKLTRGVTEWNPRTDTVAIHTWVHPWLPLLGSRL 123
            Q V+P+LT  V EWNP TDT+ IHTW HPWLPLLG RL
Sbjct:  533 QQVMPRLTLAVEEWNPLTDTIPIHTWTHPWLPLLGQRL 570
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BLAST of mRNA_H-elongata_contig85473.16132.1 vs. uniprot
Match: UPI00073810E6 (tuftelin-interacting protein 11 n=1 Tax=Diachasma alloeum TaxID=454923 RepID=UPI00073810E6)

HSP 1 Score: 69.3 bits (168), Expect = 1.100e-12
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   16 VLPKLTRGVTEWNPRTDTVAIHTWVHPWLPLLGSRL 123
            VLPKLT  V EWNP TDTV IHTW+HPWLPL+G+R+
Sbjct:  531 VLPKLTLEVEEWNPLTDTVPIHTWIHPWLPLMGNRM 566
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BLAST of mRNA_H-elongata_contig85473.16132.1 vs. uniprot
Match: UPI0004CDC447 (tuftelin-interacting protein 11 n=1 Tax=Microplitis demolitor TaxID=69319 RepID=UPI0004CDC447)

HSP 1 Score: 69.3 bits (168), Expect = 1.100e-12
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   16 VLPKLTRGVTEWNPRTDTVAIHTWVHPWLPLLGSRL 123
            VLPKLT  V EWNP TDTV IHTW+HPWLPL+G+R+
Sbjct:  507 VLPKLTLEVEEWNPLTDTVPIHTWIHPWLPLMGNRM 542
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BLAST of mRNA_H-elongata_contig85473.16132.1 vs. uniprot
Match: A0A6P8Y282_THRPL (tuftelin-interacting protein 11 n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8Y282_THRPL)

HSP 1 Score: 68.9 bits (167), Expect = 1.500e-12
Identity = 29/38 (76.32%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:   10 QAVLPKLTRGVTEWNPRTDTVAIHTWVHPWLPLLGSRL 123
            Q VLP LT  V EWNP TDTV IHTW HPWLPLLG RL
Sbjct:  530 QQVLPHLTLAVEEWNPLTDTVPIHTWTHPWLPLLGRRL 567
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BLAST of mRNA_H-elongata_contig85473.16132.1 vs. uniprot
Match: A0A2P8ZGS9_BLAGE (Tuftelin-interacting protein 11 n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8ZGS9_BLAGE)

HSP 1 Score: 68.6 bits (166), Expect = 2.050e-12
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   10 QAVLPKLTRGVTEWNPRTDTVAIHTWVHPWLPLLGSRL 123
            Q VLP++   V EWNP TDTV IH W+HPWLPLLGSRL
Sbjct:  518 QLVLPRIQHEVEEWNPMTDTVPIHAWIHPWLPLLGSRL 555
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BLAST of mRNA_H-elongata_contig85473.16132.1 vs. uniprot
Match: UPI00158F4624 (tuftelin-interacting protein 11 n=1 Tax=Chelonus insularis TaxID=460826 RepID=UPI00158F4624)

HSP 1 Score: 68.6 bits (166), Expect = 2.050e-12
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   16 VLPKLTRGVTEWNPRTDTVAIHTWVHPWLPLLGSRL 123
            +LPKLT  V EWNP TDT+ IHTW+HPWLPL+G+R+
Sbjct:  509 ILPKLTLEVEEWNPLTDTIPIHTWIHPWLPLMGNRM 544
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85473.16132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQD4_ECTSI1.850e-1990.24G-patch domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KWE3_9PHAE1.860e-1990.24GCFC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A834XRV6_9HYME4.310e-1375.00G-patch domain-containing protein n=1 Tax=Aphidius... [more]
A0A6J0B8A1_NEOLC5.890e-1377.78septin-interacting protein 1 n=6 Tax=Tenthredinoid... [more]
A0A6J1SDC1_FRAOC1.100e-1271.05tuftelin-interacting protein 11 isoform X1 n=2 Tax... [more]
UPI00073810E61.100e-1275.00tuftelin-interacting protein 11 n=1 Tax=Diachasma ... [more]
UPI0004CDC4471.100e-1275.00tuftelin-interacting protein 11 n=1 Tax=Micropliti... [more]
A0A6P8Y282_THRPL1.500e-1276.32tuftelin-interacting protein 11 n=1 Tax=Thrips pal... [more]
A0A2P8ZGS9_BLAGE2.050e-1271.05Tuftelin-interacting protein 11 n=1 Tax=Blattella ... [more]
UPI00158F46242.050e-1269.44tuftelin-interacting protein 11 n=1 Tax=Chelonus i... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85473contigH-elongata_contig85473:2491..2613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue9.7e-16
Seed eggNOG ortholog2880.D8LQD4
Preferred nameTFIP11
KEGG koko:K13103
GOsGO:0000228,GO:0000375,GO:0000377,GO:0000390,GO:0000398,GO:0000723,GO:0000781,GO:0000784,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006282,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0008380,GO:0009892,GO:0009987,GO:0010467,GO:0010605,GO:0016043,GO:0016070,GO:0016071,GO:0016233,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022411,GO:0030154,GO:0030198,GO:0031012,GO:0031323,GO:0031324,GO:0031333,GO:0031848,GO:0031974,GO:0031981,GO:0032091,GO:0032200,GO:0032502,GO:0032984,GO:0032988,GO:0032991,GO:0033554,GO:0034641,GO:0042592,GO:0042752,GO:0043021,GO:0043062,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043247,GO:0043254,GO:0043393,GO:0043933,GO:0044087,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044421,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045738,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051100,GO:0051105,GO:0051107,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051276,GO:0051340,GO:0051352,GO:0051716,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070990,GO:0071008,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0098687,GO:1901360,GO:1902494,GO:1904875,GO:1904876,GO:1990446,GO:1990904,GO:2000779,GO:2000780,GO:2001020,GO:2001021,GO:2001032,GO:2001033
EggNOG free text desc.spliceosomal complex disassembly
EggNOG OGsKOG2184@1,KOG2184@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size123
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931257.6398969-CDS-H-elongata_contig85473:2490..26131622931257.6398969-CDS-H-elongata_contig85473:2490..2613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85473 2491..2613 +
1691679762.607616-CDS-H-elongata_contig85473:2490..26131691679762.607616-CDS-H-elongata_contig85473:2490..2613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85473 2491..2613 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85473.16132.1prot_H-elongata_contig85473.16132.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85473 2491..2613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85473.16132.1

>prot_H-elongata_contig85473.16132.1 ID=prot_H-elongata_contig85473.16132.1|Name=mRNA_H-elongata_contig85473.16132.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
LFLQAVLPKLTRGVTEWNPRTDTVAIHTWVHPWLPLLGSRL
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mRNA from alignment at H-elongata_contig85473:2491..2613+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85473.16132.1 ID=mRNA_H-elongata_contig85473.16132.1|Name=mRNA_H-elongata_contig85473.16132.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=123bp|location=Sequence derived from alignment at H-elongata_contig85473:2491..2613+ (Himanthalia elongata Himel1 dioecious)
TTATTTTTGCAGGCAGTCTTGCCCAAGCTCACGAGAGGGGTCACGGAATG
GAATCCTCGCACGGACACAGTCGCTATTCACACTTGGGTTCATCCCTGGC
TGCCGCTCCTGGGATCTCGACTA
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Coding sequence (CDS) from alignment at H-elongata_contig85473:2491..2613+

>mRNA_H-elongata_contig85473.16132.1 ID=mRNA_H-elongata_contig85473.16132.1|Name=mRNA_H-elongata_contig85473.16132.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig85473:2491..2613+ (Himanthalia elongata Himel1 dioecious)
TTATTTTTGCAGGCAGTCTTGCCCAAGCTCACGAGAGGGGTCACGGAATG
GAATCCTCGCACGGACACAGTCGCTATTCACACTTGGGTTCATCCCTGGC
TGCCGCTCCTGGGATCTCGACTATTATTTTTGCAGGCAGTCTTGCCCAAG
CTCACGAGAGGGGTCACGGAATGGAATCCTCGCACGGACACAGTCGCTAT
TCACACTTGGGTTCATCCCTGGCTGCCGCTCCTGGGATCTCGACTA
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