mRNA_H-elongata_contig85341.16128.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85341.16128.1
Unique NamemRNA_H-elongata_contig85341.16128.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig85341.16128.1 vs. uniprot
Match: A0A6H5J663_9PHAE (2-Hacid_dh_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J663_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 3.640e-29
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 1
Query:    1 RGAALDVFCVEPLPEDSPLWAMENVLLSSHNADLTATFLNDSVRLFVENVANFIAGEEGSMHLVDKRAGY 210
            RGA+LDVFC EPLP +S LW +ENVLLS HNADLTA FLNDSVRLF +NV NF+ GEE S+HLVDKRAGY
Sbjct:  274 RGASLDVFCKEPLPAESDLWGLENVLLSPHNADLTAHFLNDSVRLFSDNVGNFVKGEEVSIHLVDKRAGY 343          
BLAST of mRNA_H-elongata_contig85341.16128.1 vs. uniprot
Match: A0A6H5KFZ0_9PHAE (2-Hacid_dh_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFZ0_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 8.350e-26
Identity = 49/70 (70.00%), Postives = 58/70 (82.86%), Query Frame = 1
Query:    1 RGAALDVFCVEPLPEDSPLWAMENVLLSSHNADLTATFLNDSVRLFVENVANFIAGEEGSMHLVDKRAGY 210
            RGAALDVF  EPLP DSPLW +ENVLLS HNADL A +L+DSVR F ENV NF+ G+E S+H+V+K+AGY
Sbjct:  273 RGAALDVFTTEPLPTDSPLWGLENVLLSPHNADLAAHYLSDSVRKFAENVDNFVKGDEMSIHVVNKKAGY 342          
BLAST of mRNA_H-elongata_contig85341.16128.1 vs. uniprot
Match: A0A835Z904_9STRA (D-isomer specific 2-hydroxyacid dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z904_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.230e-22
Identity = 46/70 (65.71%), Postives = 53/70 (75.71%), Query Frame = 1
Query:    1 RGAALDVFCVEPLPEDSPLWAMENVLLSSHNADLTATFLNDSVRLFVENVANFIAGEEGSMHLVDKRAGY 210
            RGAALDVF  EPLP DS LW M NVLLS HNAD+TATFL+DSVR F ++ A F  GE  ++H+VDK  GY
Sbjct:  262 RGAALDVFETEPLPRDSALWGMGNVLLSPHNADMTATFLHDSVRRFAQDAARFARGEPFTLHVVDKEKGY 331          
BLAST of mRNA_H-elongata_contig85341.16128.1 vs. uniprot
Match: A0A482RWC2_9ARCH (D-2-hydroxyacid dehydrogenase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RWC2_9ARCH)

HSP 1 Score: 83.6 bits (205), Expect = 8.180e-18
Identity = 41/69 (59.42%), Postives = 47/69 (68.12%), Query Frame = 1
Query:    4 GAALDVFCVEPLPEDSPLWAMENVLLSSHNADLTATFLNDSVRLFVENVANFIAGEEGSMHLVDKRAGY 210
            GAALDVFC EPLP DSPLW + NVL+S HNADLT+     SVR F +    FI+GE     +VDK AGY
Sbjct:  199 GAALDVFCTEPLPADSPLWQLPNVLVSPHNADLTSDSRQSSVRYFTQLCQKFISGEGVDEAVVDKSAGY 267          
BLAST of mRNA_H-elongata_contig85341.16128.1 vs. uniprot
Match: A0A7S7NLU9_9BACT (D-2-hydroxyacid dehydrogenase n=1 Tax=Paludibaculum fermentans TaxID=1473598 RepID=A0A7S7NLU9_9BACT)

HSP 1 Score: 84.0 bits (206), Expect = 1.010e-17
Identity = 42/70 (60.00%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    1 RGAALDVFCVEPLPEDSPLWAMENVLLSSHNADLTATFLNDSVRLFVENVANFIAGEEGSMHLVDKRAGY 210
            RGA LDVF  EPLPED PLWA++NVLLS H +D TAT+LND++ LF+EN   F  GE    ++ DK+AGY
Sbjct:  241 RGAVLDVFDEEPLPEDHPLWALDNVLLSPHCSDNTATWLNDAMELFLENYTLFAQGEP-LKNISDKKAGY 309          
BLAST of mRNA_H-elongata_contig85341.16128.1 vs. uniprot
Match: B7FTZ9_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FTZ9_PHATC)

HSP 1 Score: 84.0 bits (206), Expect = 2.180e-17
Identity = 40/71 (56.34%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    1 RGAALDVFCVEPLPEDSPLWAMENVLLSSHNADLTATFLNDSVRLFVE-NVANFIAGEEGSMHLVDKRAGY 210
            +GAALDVF VEPLP  SPLW M+NVLLS HN D TATF++++   +VE N+  F+ G+E  +++VD +AGY
Sbjct:  341 KGAALDVFTVEPLPNSSPLWEMDNVLLSPHNMDQTATFMHEATEFYVEENLPRFVRGQE-LLNIVDAKAGY 410          
BLAST of mRNA_H-elongata_contig85341.16128.1 vs. uniprot
Match: A0A7S2L871_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L871_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.410e-17
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    1 RGAALDVFCVEPLPEDSPLWAMENVLLSSHNADLTATFLNDSVRLFV-ENVANFIAGEEGSMHLVDKRAGY 210
            RGAALDVF VEPLPEDS LW ++NVL+S HN D TATFL+++   FV EN+  F+ G    ++ VDK AGY
Sbjct:  160 RGAALDVFTVEPLPEDSELWTLDNVLISPHNMDQTATFLHEATEFFVHENMPRFLRGMP-LLNPVDKAAGY 229          
BLAST of mRNA_H-elongata_contig85341.16128.1 vs. uniprot
Match: A0A7C3HWR9_9BACT (D-2-hydroxyacid dehydrogenase n=1 Tax=Bryobacterales bacterium TaxID=2026791 RepID=A0A7C3HWR9_9BACT)

HSP 1 Score: 81.6 bits (200), Expect = 7.390e-17
Identity = 42/70 (60.00%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    1 RGAALDVFCVEPLPEDSPLWAMENVLLSSHNADLTATFLNDSVRLFVENVANFIAGEEGSMHLVDKRAGY 210
            RGAALDV+ VEPLP D  LW MENVLLS H AD T T+L ++ R FV+N   +I GE    +LVDK+AGY
Sbjct:  241 RGAALDVYPVEPLPPDHELWGMENVLLSPHTADHTETWLEEATRFFVKNYTRWIQGEPLE-NLVDKQAGY 309          
BLAST of mRNA_H-elongata_contig85341.16128.1 vs. uniprot
Match: K0R105_THAOC (2-Hacid_dh_C domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R105_THAOC)

HSP 1 Score: 80.5 bits (197), Expect = 2.860e-16
Identity = 38/71 (53.52%), Postives = 53/71 (74.65%), Query Frame = 1
Query:    1 RGAALDVFCVEPLPEDSPLWAMENVLLSSHNADLTATFLNDSVRLFV-ENVANFIAGEEGSMHLVDKRAGY 210
            RGA LDV  VEPLP+DSPLW ++NVLLS HN D+T +F+ +S + F+ EN+  F+ G+E  ++ VD +AGY
Sbjct:  282 RGAGLDVMTVEPLPKDSPLWKLDNVLLSPHNMDMTLSFMKESTQFFIDENLPRFVRGQE-LLNPVDLKAGY 351          
BLAST of mRNA_H-elongata_contig85341.16128.1 vs. uniprot
Match: A0A7S3GZJ0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GZJ0_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.190e-16
Identity = 41/69 (59.42%), Postives = 48/69 (69.57%), Query Frame = 1
Query:    4 GAALDVFCVEPLPEDSPLWAMENVLLSSHNADLTATFLNDSVRLFVENVANFIAGEEGSMHLVDKRAGY 210
             AALDVF VEPLP+DSPLW M NVL+S HNADLT      SV+ F ENV +F+  +E    +VDK AGY
Sbjct:  118 AAALDVFTVEPLPKDSPLWDMPNVLISPHNADLTEDSRFSSVKFFTENVQHFLERKELEC-VVDKTAGY 185          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85341.16128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J663_9PHAE3.640e-2977.142-Hacid_dh_C domain-containing protein n=2 Tax=Ect... [more]
A0A6H5KFZ0_9PHAE8.350e-2670.002-Hacid_dh_C domain-containing protein n=2 Tax=Ect... [more]
A0A835Z904_9STRA2.230e-2265.71D-isomer specific 2-hydroxyacid dehydrogenase n=1 ... [more]
A0A482RWC2_9ARCH8.180e-1859.42D-2-hydroxyacid dehydrogenase n=1 Tax=archaeon Tax... [more]
A0A7S7NLU9_9BACT1.010e-1760.00D-2-hydroxyacid dehydrogenase n=1 Tax=Paludibaculu... [more]
B7FTZ9_PHATC2.180e-1756.34Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2L871_9STRA2.410e-1759.15Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7C3HWR9_9BACT7.390e-1760.00D-2-hydroxyacid dehydrogenase n=1 Tax=Bryobacteral... [more]
K0R105_THAOC2.860e-1653.522-Hacid_dh_C domain-containing protein n=1 Tax=Tha... [more]
A0A7S3GZJ0_9STRA3.190e-1659.42Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85341contigH-elongata_contig85341:2463..2675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.8
Seed ortholog evalue1.7e-23
Seed eggNOG ortholog2880.D8LGJ7
EggNOG free text desc.hydroxypyruvate reductase activity
EggNOG OGsCOG1052@1,KOG0069@2759
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931257.352322-CDS-H-elongata_contig85341:2462..26751622931257.352322-CDS-H-elongata_contig85341:2462..2675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85341 2463..2675 -
1691679762.477212-CDS-H-elongata_contig85341:2462..26751691679762.477212-CDS-H-elongata_contig85341:2462..2675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85341 2463..2675 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85341.16128.1prot_H-elongata_contig85341.16128.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85341 2463..2675 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85341.16128.1

>prot_H-elongata_contig85341.16128.1 ID=prot_H-elongata_contig85341.16128.1|Name=mRNA_H-elongata_contig85341.16128.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
RGAALDVFCVEPLPEDSPLWAMENVLLSSHNADLTATFLNDSVRLFVENV
ANFIAGEEGSMHLVDKRAGY*
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mRNA from alignment at H-elongata_contig85341:2463..2675-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85341.16128.1 ID=mRNA_H-elongata_contig85341.16128.1|Name=mRNA_H-elongata_contig85341.16128.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig85341:2463..2675- (Himanthalia elongata Himel1 dioecious)
AGGGGAGCCGCGCTCGACGTTTTTTGCGTCGAGCCCCTCCCGGAGGATAG CCCGCTGTGGGCCATGGAAAACGTGCTCTTGTCTTCACACAACGCGGATC TAACCGCCACGTTCCTGAATGACAGCGTGCGCTTGTTCGTGGAAAATGTG GCCAACTTCATCGCGGGCGAGGAGGGCTCGATGCACCTCGTGGACAAGAG GGCGGGATACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig85341:2463..2675-

>mRNA_H-elongata_contig85341.16128.1 ID=mRNA_H-elongata_contig85341.16128.1|Name=mRNA_H-elongata_contig85341.16128.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig85341:2463..2675- (Himanthalia elongata Himel1 dioecious)
AGGGGAGCCGCGCTCGACGTTTTTTGCGTCGAGCCCCTCCCGGAGGATAG
CCCGCTGTGGGCCATGGAAAACGTGCTCTTGTCTTCACACAACGCGGATC
TAACCGCCACGTTCCTGAATGACAGCGTGCGCTTGTTCGTGGAAAATGTG
GCCAACTTCATCGCGGGCGAGGAGGGCTCGATGCACCTCGTGGACAAGAG
GGCGGGATACTGAAGGGGAGCCGCGCTCGACGTTTTTTGCGTCGAGCCCC
TCCCGGAGGATAGCCCGCTGTGGGCCATGGAAAACGTGCTCTTGTCTTCA
CACAACGCGGATCTAACCGCCACGTTCCTGAATGACAGCGTGCGCTTGTT
CGTGGAAAATGTGGCCAACTTCATCGCGGGCGAGGAGGGCTCGATGCACC
TCGTGGACAAGAGGGCGGGATACTGA
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