mRNA_H-elongata_contig8530.16126.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8530.16126.1
Unique NamemRNA_H-elongata_contig8530.16126.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8530.16126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8530contigH-elongata_contig8530:5697..6129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size434
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931256.8324628-CDS-H-elongata_contig8530:5696..61281622931256.8324628-CDS-H-elongata_contig8530:5696..6128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8530 5697..6128 +
1691679762.2728589-CDS-H-elongata_contig8530:5696..61281691679762.2728589-CDS-H-elongata_contig8530:5696..6128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8530 5697..6128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8530.16126.1prot_H-elongata_contig8530.16126.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8530 5697..6128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8530.16126.1

>prot_H-elongata_contig8530.16126.1 ID=prot_H-elongata_contig8530.16126.1|Name=mRNA_H-elongata_contig8530.16126.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp
RHNLNIYNTNITPLGRKSPFFLHSRHHRGITQKLLPEEGTLLKMIVPPRV
RAVCVCDSETGPFSIITLCLSPRNLRCCILSSFIVTPPHRRQWSDTPQTT
QNFITACTLCCSQQGSVALEGCRDVPREHVTLSLKLWQDQCLTD
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mRNA from alignment at H-elongata_contig8530:5697..6129+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8530.16126.1 ID=mRNA_H-elongata_contig8530.16126.1|Name=mRNA_H-elongata_contig8530.16126.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=433bp|location=Sequence derived from alignment at H-elongata_contig8530:5697..6129+ (Himanthalia elongata Himel1 dioecious)
CGCCACAACTTGAACATATATAATACTAACATAACACCCCTAGGGCGTAA
ATCTCCATTTTTTCTGCATTCAAGGCATCACCGGGGGATTACACAGAAAC
TGCTTCCCGAAGAGGGAACATTATTAAAAATGATTGTACCACCGAGGGTG
AGGGCGGTGTGTGTGTGTGATAGCGAAACGGGCCCCTTTTCCATCATCAC
CCTGTGTCTTTCACCGCGTAACCTACGTTGCTGCATTCTCTCTAGCTTCA
TCGTCACTCCGCCACACCGTAGGCAATGGTCTGATACTCCCCAAACAACG
CAAAATTTTATCACTGCGTGCACCCTGTGTTGTTCACAGCAAGGCAGCGT
TGCCCTTGAGGGCTGTAGAGATGTACCTCGGGAACACGTCACCTTGTCGC
TGAAACTGTGGCAGGATCAGTGCCTGACAGACC
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Coding sequence (CDS) from alignment at H-elongata_contig8530:5697..6129+

>mRNA_H-elongata_contig8530.16126.1 ID=mRNA_H-elongata_contig8530.16126.1|Name=mRNA_H-elongata_contig8530.16126.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig8530:5697..6129+ (Himanthalia elongata Himel1 dioecious)
CGCCACAACTTGAACATATATAATACTAACATAACACCCCTAGGGCGTAA
ATCTCCATTTTTTCTGCATTCAAGGCATCACCGGGGGATTACACAGAAAC
TGCTTCCCGAAGAGGGAACATTATTAAAAATGATTGTACCACCGAGGGTG
AGGGCGGTGTGTGTGTGTGATAGCGAAACGGGCCCCTTTTCCATCATCAC
CCTGTGTCTTTCACCGCGTAACCTACGTTGCTGCATTCTCTCTAGCTTCA
TCGTCACTCCGCCACACCGTAGGCAATGGTCTGATACTCCCCAAACAACG
CAAAATTTTATCACTGCGTGCACCCTGTGTTGTTCACAGCAAGGCAGCGT
TGCCCTTGAGGGCTGTAGAGATGTACCTCGGGAACACGTCACCTTGTCGC
TGAAACTGTGGCAGGATCAGTGCCTGACAGACCGCCACAACTTGAACATA
TATAATACTAACATAACACCCCTAGGGCGTAAATCTCCATTTTTTCTGCA
TTCAAGGCATCACCGGGGGATTACACAGAAACTGCTTCCCGAAGAGGGAA
CATTATTAAAAATGATTGTACCACCGAGGGTGAGGGCGGTGTGTGTGTGT
GATAGCGAAACGGGCCCCTTTTCCATCATCACCCTGTGTCTTTCACCGCG
TAACCTACGTTGCTGCATTCTCTCTAGCTTCATCGTCACTCCGCCACACC
GTAGGCAATGGTCTGATACTCCCCAAACAACGCAAAATTTTATCACTGCG
TGCACCCTGTGTTGTTCACAGCAAGGCAGCGTTGCCCTTGAGGGCTGTAG
AGATGTACCTCGGGAACACGTCACCTTGTCGCTGAAACTGTGGCAGGATC
AGTGCCTGACAGAC
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