mRNA_H-elongata_contig12097.1612.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig12097.1612.1
Unique NamemRNA_H-elongata_contig12097.1612.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig12097.1612.1 vs. uniprot
Match: D8LUA4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUA4_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 2.090e-15
Identity = 39/55 (70.91%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:  160 PIGGLRHLSNLRGLPSLMELTLDDIHFGACPVVAVKGYRDFVMCYLRQVGEREGV 324
            PI G+RHLS LRGLPSLMELTLDDIHFG CPVVA  GYR FV+  L QV   +G+
Sbjct:  118 PIVGVRHLSGLRGLPSLMELTLDDIHFGTCPVVAKAGYRSFVLRCLSQVRRLDGL 172
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BLAST of mRNA_H-elongata_contig12097.1612.1 vs. uniprot
Match: A0A7S1G818_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G818_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.120e-6
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:  208 LMELTLDDIHFGACPVVAVKGYRDFVMCYLRQVGEREG 321
            L  L+ DD+H+G+CPV+   GYRDFV+C LRQ+ E +G
Sbjct:  231 LRSLSFDDVHYGSCPVINADGYRDFVLCTLRQLTELDG 268
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12097.1612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LUA4_ECTSI2.090e-1570.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1G818_9STRA3.120e-655.26Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig12097contigH-elongata_contig12097:1388..1910 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue2.4e-13
Seed eggNOG ortholog2880.D8LUA4
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929711.0417447-CDS-H-elongata_contig12097:1387..15251622929711.0417447-CDS-H-elongata_contig12097:1387..1525Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12097 1388..1525 +
1691679128.2505748-CDS-H-elongata_contig12097:1387..15251691679128.2505748-CDS-H-elongata_contig12097:1387..1525Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12097 1388..1525 +
1622929711.0563009-CDS-H-elongata_contig12097:1721..19101622929711.0563009-CDS-H-elongata_contig12097:1721..1910Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12097 1722..1910 +
1691679128.2664716-CDS-H-elongata_contig12097:1721..19101691679128.2664716-CDS-H-elongata_contig12097:1721..1910Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig12097 1722..1910 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig12097.1612.1prot_H-elongata_contig12097.1612.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig12097 1388..1910 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig12097.1612.1

>prot_H-elongata_contig12097.1612.1 ID=prot_H-elongata_contig12097.1612.1|Name=mRNA_H-elongata_contig12097.1612.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
LRRLWLFSNRIASMEGLYHCGDLRELLLHDNMISAAADLESLVHLQHLGL
AGNPIGGLRHLSNLRGLPSLMELTLDDIHFGACPVVAVKGYRDFVMCYLR
QVGEREGVR
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mRNA from alignment at H-elongata_contig12097:1388..1910+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig12097.1612.1 ID=mRNA_H-elongata_contig12097.1612.1|Name=mRNA_H-elongata_contig12097.1612.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=523bp|location=Sequence derived from alignment at H-elongata_contig12097:1388..1910+ (Himanthalia elongata Himel1 dioecious)
CTGCGCAGACTCTGGCTTTTCTCGAACCGCATTGCGAGCATGGAAGGGCT
CTACCACTGCGGCGATCTGCGAGAGCTGTTGCTTCACGACAACATGATAT
CCGCGGCAGCCGATCTGGAGTCCCTCGTTCACCTCCAGGTGTCCCAAGGC
GTCGAATGTGTGAAAGCATTTTCCTGTGTGTGTGTGTGTGTGTGTTGAGG
GGAAGGGTCATATCTGATGCGCTAGCCAAAGGAGTCTCGCTTCACGCGAA
CGAAAGCGAATTTTCTTAGGGTTTCCCCCGCGACACTGCGGTTACTTCCT
CGCCTCGCTTTTTCATCTTCGCGCTTTGACGCAGCACCTCGGGCTGGCGG
GCAATCCAATCGGAGGGCTTCGGCACCTCTCGAACCTGCGCGGGCTGCCT
TCGCTTATGGAGTTGACGCTGGATGACATCCACTTTGGTGCTTGCCCCGT
CGTTGCAGTGAAAGGCTATCGTGACTTCGTCATGTGCTACCTGCGTCAGG
TAGGAGAGAGAGAAGGAGTGAGA
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Coding sequence (CDS) from alignment at H-elongata_contig12097:1388..1910+

>mRNA_H-elongata_contig12097.1612.1 ID=mRNA_H-elongata_contig12097.1612.1|Name=mRNA_H-elongata_contig12097.1612.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig12097:1388..1910+ (Himanthalia elongata Himel1 dioecious)
CTGCGCAGACTCTGGCTTTTCTCGAACCGCATTGCGAGCATGGAAGGGCT
CTACCACTGCGGCGATCTGCGAGAGCTGTTGCTTCACGACAACATGATAT
CCGCGGCAGCCGATCTGGAGTCCCTCGTTCACCTCCAGCTGCGCAGACTC
TGGCTTTTCTCGAACCGCATTGCGAGCATGGAAGGGCTCTACCACTGCGG
CGATCTGCGAGAGCTGTTGCTTCACGACAACATGATATCCGCGGCAGCCG
ATCTGGAGTCCCTCGTTCACCTCCAGCACCTCGGGCTGGCGGGCAATCCA
ATCGGAGGGCTTCGGCACCTCTCGAACCTGCGCGGGCTGCCTTCGCTTAT
GGAGTTGACGCTGGATGACATCCACTTTGGTGCTTGCCCCGTCGTTGCAG
TGAAAGGCTATCGTGACTTCGTCATGTGCTACCTGCGTCAGGTAGGAGAG
AGAGAAGGAGTGAGACACCTCGGGCTGGCGGGCAATCCAATCGGAGGGCT
TCGGCACCTCTCGAACCTGCGCGGGCTGCCTTCGCTTATGGAGTTGACGC
TGGATGACATCCACTTTGGTGCTTGCCCCGTCGTTGCAGTGAAAGGCTAT
CGTGACTTCGTCATGTGCTACCTGCGTCAGGTAGGAGAGAGAGAAGGAGT
GAGA
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