mRNA_H-elongata_contig85229.16112.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85229.16112.1
Unique NamemRNA_H-elongata_contig85229.16112.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig85229.16112.1 vs. uniprot
Match: D7G5K7_ECTSI (RME1L2, RME1-like GTPase/ATPase without a C-terminal EH domain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K7_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 5.320e-48
Identity = 80/102 (78.43%), Postives = 89/102 (87.25%), Query Frame = 1 
Query:    1 RKKIRPVEEAFLFDHFHCEPITDAEMEAKSQVLVIGQYSTGKTTFIRHLLGTDFPNMNIGPEPTTDKFTVVLHGKEDRTVDGTSLCVVRELPYEDLTRFGPG 306
            RKK+R VEEAF F  FH + ITD E+EAKSQVLVIGQYSTGKTTFIRHLLG DFPNMN+GPEPTTDKFTVV+HG+EDR V+G  L VV+ELPYE L+RFGPG
Sbjct:   33 RKKLRLVEEAFFFGQFHYDAITDTELEAKSQVLVIGQYSTGKTTFIRHLLGADFPNMNVGPEPTTDKFTVVIHGQEDRPVEGNILAVVKELPYEGLSRFGPG 134
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BLAST of mRNA_H-elongata_contig85229.16112.1 vs. uniprot
Match: A0A482SPK1_9ARCH (Dynamin-type G domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SPK1_9ARCH)

HSP 1 Score: 125 bits (315), Expect = 5.640e-35
Identity = 55/100 (55.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:    1 RKKIRPVEEAFLFDHFHCEPITDAEMEAKSQVLVIGQYSTGKTTFIRHLLGTDFPNMNIGPEPTTDKFTVVLHGKEDRTVDGTSLCVVRELPYEDLTRFG 300
            + KI P+E+ + FD FH   +TDAE ++K QV+++GQYS GKTTFIR+LLG DFP   IGPEPTTD+FT +  G + RT+ G +L V R++PY  L RFG
Sbjct:   22 KTKILPLEQYYRFDIFHSPYLTDAEFDSKPQVMLLGQYSVGKTTFIRYLLGADFPGQRIGPEPTTDRFTAIFDGPDSRTIPGNALAVSRDMPYRGLERFG 121
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BLAST of mRNA_H-elongata_contig85229.16112.1 vs. uniprot
Match: A0A2R5GNV2_9STRA (Phosphatidate cytidylyltransferase, mitochondrial n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GNV2_9STRA)

HSP 1 Score: 133 bits (334), Expect = 5.470e-34
Identity = 57/99 (57.58%), Postives = 76/99 (76.77%), Query Frame = 1 
Query:    4 KKIRPVEEAFLFDHFHCEPITDAEMEAKSQVLVIGQYSTGKTTFIRHLLGTDFPNMNIGPEPTTDKFTVVLHGKEDRTVDGTSLCVVRELPYEDLTRFG 300
            +KIRP+EE + FDHF    +TDAE EAK  VL++GQYS GKTTFI+HL+G DFP + IGPEPTTD+F  V+HG +D+T+ G +LCV  + P+  L++FG
Sbjct:  109 EKIRPLEETYKFDHFFSPCLTDAEFEAKPMVLLLGQYSVGKTTFIKHLIGRDFPGIRIGPEPTTDRFVAVMHGDQDQTIPGNALCVSADKPFTALSKFG 207
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BLAST of mRNA_H-elongata_contig85229.16112.1 vs. uniprot
Match: A0A5A8C9H3_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C9H3_CAFRO)

HSP 1 Score: 130 bits (327), Expect = 2.820e-33
Identity = 55/96 (57.29%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:   13 RPVEEAFLFDHFHCEPITDAEMEAKSQVLVIGQYSTGKTTFIRHLLGTDFPNMNIGPEPTTDKFTVVLHGKEDRTVDGTSLCVVRELPYEDLTRFG 300
            RP+EE +L+  FH   +TDA++++K  VL++GQYS GKTTFI+HLLG DFP M IGPEPTTD+FT+++ G+EDRT+ G +L V R++P+  L RFG
Sbjct:   32 RPLEENYLYGEFHSPILTDADIDSKPMVLLLGQYSVGKTTFIKHLLGRDFPGMRIGPEPTTDRFTIIMSGEEDRTIPGNALAVDRDMPFTSLQRFG 127
[Close]
BLAST of mRNA_H-elongata_contig85229.16112.1 vs. uniprot
Match: C1MIT3_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MIT3_MICPC)

HSP 1 Score: 127 bits (320), Expect = 1.610e-32
Identity = 58/100 (58.00%), Postives = 72/100 (72.00%), Query Frame = 1 
Query:    1 RKKIRPVEEAFLFDHFHCEPITDAEMEAKSQVLVIGQYSTGKTTFIRHLLGTDFPNMNIGPEPTTDKFTVVLHGKEDRTVDGTSLCVVRELPYEDLTRFG 300
            + K+RPVEEA  F  F+   +TD + E K  VL++GQYSTGKTTFI+HLLG D+P  NIGPEPTTD+F VV+HG E+RT  G +L V  + PY  LT FG
Sbjct:  152 KTKVRPVEEALKFGSFYSPLLTDGDFEGKPNVLLLGQYSTGKTTFIKHLLGRDYPGSNIGPEPTTDRFVVVMHGHENRTTPGQTLAVQSDKPYTGLTAFG 251
[Close]
BLAST of mRNA_H-elongata_contig85229.16112.1 vs. uniprot
Match: A0A835YYV9_9STRA (RME1, RME-1/EHD family ATPase with a C-terminal EH domain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYV9_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.910e-32
Identity = 56/98 (57.14%), Postives = 73/98 (74.49%), Query Frame = 1 
Query:    7 KIRPVEEAFLFDHFHCEPITDAEMEAKSQVLVIGQYSTGKTTFIRHLLGTDFPNMNIGPEPTTDKFTVVLHGKEDRTVDGTSLCVVRELPYEDLTRFG 300
            K++P+E  +LFDHFH   +TD+E ++K QVL+IGQYSTGKT+FIR+LLG DFP   IGPEPTTD+F  V+ G ++R + G +L V   LPY  L RFG
Sbjct:   24 KLKPLESCYLFDHFHSPLLTDSEFDSKPQVLMIGQYSTGKTSFIRYLLGRDFPGQRIGPEPTTDRFVAVMDGADERVIPGNALTVSPNLPYRGLDRFG 121
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BLAST of mRNA_H-elongata_contig85229.16112.1 vs. uniprot
Match: A0A7S2XRP5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XRP5_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.410e-32
Identity = 56/101 (55.45%), Postives = 76/101 (75.25%), Query Frame = 1 
Query:    1 RKKIRPVEEAFLFDHFHCEP-ITDAEMEAKSQVLVIGQYSTGKTTFIRHLLGTDFPNMNIGPEPTTDKFTVVLHGKEDRTVDGTSLCVVRELPYEDLTRFG 300
            RK + PVE+   +D+F+  P +TD E E+K QV++IGQYS GKT+FIR+LLG DFP   IGPEPTTD+FTV+++G E+RT+ G +L V  +LP+  L RFG
Sbjct:   42 RKSVYPVEKRHRYDYFYESPYLTDVEFESKPQVMLIGQYSVGKTSFIRYLLGRDFPGQRIGPEPTTDRFTVLINGPEERTIPGNALSVHPDLPFRGLERFG 142
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BLAST of mRNA_H-elongata_contig85229.16112.1 vs. uniprot
Match: A0A139AKG8_GONPJ (Past-1 n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AKG8_GONPJ)

HSP 1 Score: 127 bits (319), Expect = 2.450e-32
Identity = 52/100 (52.00%), Postives = 75/100 (75.00%), Query Frame = 1 
Query:    1 RKKIRPVEEAFLFDHFHCEPITDAEMEAKSQVLVIGQYSTGKTTFIRHLLGTDFPNMNIGPEPTTDKFTVVLHGKEDRTVDGTSLCVVRELPYEDLTRFG 300
            RKK+RP+EE + F+ FH  P+TD+++ AK  VL++GQYS GK+TFI+++L  ++P  NIGPEPTTD+F  V+H  +DR + G + CV  +LP+  LTRFG
Sbjct:    9 RKKLRPLEELYKFEQFHSPPLTDSDVAAKPMVLLLGQYSVGKSTFIKYILEREYPGCNIGPEPTTDRFNAVMHAPDDRIIPGNAACVTADLPFTSLTRFG 108
[Close]
BLAST of mRNA_H-elongata_contig85229.16112.1 vs. uniprot
Match: C1E033_MICCC (Dynamin-type G domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E033_MICCC)

HSP 1 Score: 125 bits (314), Expect = 3.910e-32
Identity = 56/100 (56.00%), Postives = 72/100 (72.00%), Query Frame = 1 
Query:    1 RKKIRPVEEAFLFDHFHCEPITDAEMEAKSQVLVIGQYSTGKTTFIRHLLGTDFPNMNIGPEPTTDKFTVVLHGKEDRTVDGTSLCVVRELPYEDLTRFG 300
            + K+RPVEEA  F  F+   +TD + E K  VL++GQYSTGKTTFI+HLLGT++P  NIGPEPTTD+F VV+HGKE R   G +L V  + P+  L+ FG
Sbjct:   53 KTKVRPVEEALKFGSFYSPLLTDGDFEGKPNVLLLGQYSTGKTTFIKHLLGTEYPGCNIGPEPTTDRFVVVMHGKEPRVTPGQTLAVQTDKPFTGLSNFG 152
[Close]
BLAST of mRNA_H-elongata_contig85229.16112.1 vs. uniprot
Match: A0A7S3GQ45_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GQ45_9STRA)

HSP 1 Score: 117 bits (292), Expect = 9.220e-32
Identity = 51/100 (51.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:    1 RKKIRPVEEAFLFDHFHCEPITDAEMEAKSQVLVIGQYSTGKTTFIRHLLGTDFPNMNIGPEPTTDKFTVVLHGKEDRTVDGTSLCVVRELPYEDLTRFG 300
            ++K+ P+E    F  F+   I D+E+ AK  +L++GQYSTGKTTFIRHL+G D+P ++IGPEPTTD+F  V+HG+E +T+ G +L  V ELP+  L+ FG
Sbjct:   10 KEKLLPIERKCQFHKFNQPEILDSELAAKPTILLVGQYSTGKTTFIRHLIGMDYPEIHIGPEPTTDRFIAVVHGEEAKTIKGNALTGVNELPFSGLSTFG 109
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85229.16112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5K7_ECTSI5.320e-4878.43RME1L2, RME1-like GTPase/ATPase without a C-termin... [more]
A0A482SPK1_9ARCH5.640e-3555.00Dynamin-type G domain-containing protein n=1 Tax=a... [more]
A0A2R5GNV2_9STRA5.470e-3457.58Phosphatidate cytidylyltransferase, mitochondrial ... [more]
A0A5A8C9H3_CAFRO2.820e-3357.29Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
C1MIT3_MICPC1.610e-3258.00Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]
A0A835YYV9_9STRA1.910e-3257.14RME1, RME-1/EHD family ATPase with a C-terminal EH... [more]
A0A7S2XRP5_9STRA2.410e-3255.45Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A139AKG8_GONPJ2.450e-3252.00Past-1 n=1 Tax=Gonapodya prolifera (strain JEL478)... [more]
C1E033_MICCC3.910e-3256.00Dynamin-type G domain-containing protein n=1 Tax=M... [more]
A0A7S3GQ45_9STRA9.220e-3251.00Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85229contigH-elongata_contig85229:130..2276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.6
Seed ortholog evalue3.7e-40
Seed eggNOG ortholog2880.D7G5K7
KEGG koko:K12483
KEGG Pathwayko04144,map04144
EggNOG free text desc.endocytic recycling
EggNOG OGsKOG1954@1,KOG1954@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons3
Model size309
Cds size309
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85229.16112.1prot_H-elongata_contig85229.16112.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85229 130..2276 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931255.4890902-CDS-H-elongata_contig85229:129..2541622931255.4890902-CDS-H-elongata_contig85229:129..254Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85229 130..254 -
1691679761.7324927-CDS-H-elongata_contig85229:129..2541691679761.7324927-CDS-H-elongata_contig85229:129..254Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85229 130..254 -
1622931255.52085-CDS-H-elongata_contig85229:1725..17771622931255.52085-CDS-H-elongata_contig85229:1725..1777Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85229 1726..1777 -
1691679761.748263-CDS-H-elongata_contig85229:1725..17771691679761.748263-CDS-H-elongata_contig85229:1725..1777Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85229 1726..1777 -
1622931255.5426877-CDS-H-elongata_contig85229:2144..22761622931255.5426877-CDS-H-elongata_contig85229:2144..2276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85229 2145..2276 -
1691679761.7579343-CDS-H-elongata_contig85229:2144..22761691679761.7579343-CDS-H-elongata_contig85229:2144..2276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85229 2145..2276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85229.16112.1

>prot_H-elongata_contig85229.16112.1 ID=prot_H-elongata_contig85229.16112.1|Name=mRNA_H-elongata_contig85229.16112.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
RKKIRPVEEAFLFDHFHCEPITDAEMEAKSQVLVIGQYSTGKTTFIRHLL
GTDFPNMNIGPEPTTDKFTVVLHGKEDRTVDGTSLCVVRELPYEDLTRFG
PG*
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mRNA from alignment at H-elongata_contig85229:130..2276-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85229.16112.1 ID=mRNA_H-elongata_contig85229.16112.1|Name=mRNA_H-elongata_contig85229.16112.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2147bp|location=Sequence derived from alignment at H-elongata_contig85229:130..2276- (Himanthalia elongata Himel1 dioecious)
AGGAAAAAAATTCGCCCGGTGGAGGAGGCGTTTTTGTTCGACCATTTTCA
CTGCGAGCCCATCACAGACGCGGAGATGGAAGCCAAGAGTCAAGTCTTGG
TGATCGGCCAGTATTCCACGGGCAAGACGACGGTAAGACACGCTACCTTT
CTCTCTTCATCGCACGACATGGGGCACGACATCGCGCTAAAATAAATCAG
TACCCTGACGTGGCGGACTTTTCTAGCGCCTTGTAATGGCTAGCGCGGCC
ATGATCACAGCCGCCCTGTGTACATGGCGGAAGAATCGGATTGCGGTCGC
CCTTTCCACGATTAATCCTTAGCGGGACGGAGAGCCACCCTACCGCTCCC
CCTCCCCCCCCACCCCCACTTTTTTTTATGCGCCTTGGTCGCCTCTTACG
TAATCCGAATCATAATAATATATAATATATCCAGCCGACGGAGGCGAGTG
ATATCTAATCCGCGCGCGTCCCCCGTGTGCCTCTGTGTGCCTCGGCCAGT
TCATTCGCCATCTTCTGGGAACGGACTTCCCCAACATGAACATCGGTCCG
GGTAAGGAGCCCCTTTATAATTTATTAATCTTCCTCATCCCCCATCTCCT
GGTTGAAAACGCTCGACGCCTCTTCCTTCTTCCAGAGGGAGGACGGGGCG
ACCGGCGACGATACTGTAGGCGATCAGTTTTTTAATAGCTCTTTGTTCAA
CCCGAAGAAGGGTTCTGTATTTCCACTATAAGGTCTATAAGGTTCTTGAC
GCGCGACGCCAACCCTCCCCGTTCCCTGTGTTCTTCTTTCTTATTAAAAA
AAACATACGAACTCATTCAAACCTTTCAAACACAAACTCGCCTTTTTTTT
TCCCTGTGGCATGGACCTGTAAACTGTAAACCTTCTCTATCTCGGCCATA
GGGTAGTAGTTCATACAGCGAGTCTTGTGAACTTAGAGAGCCTCGGCAAA
AGAGTCTTATCTGTCTCGAAGGTGGTGAAACACATGACATTCTATTGGAT
ACACATGACATTCTATTGGATACACATGACATTCTATTGGATGCCCTAAC
AAACAATAAATTTTGCTGGAAAGCCCTGGAGCAATCATATAGCTTATGAT
GGGGTACTCCGCCAGGAAAATTCATGAGCAGATTACACCGAATGATATTT
GAATAACTTTTTTACCTTGTGACCCACGGGCTGGATGTTTTTTTGTTGTT
TTTTTTTTGCATAAGCTTAGCTTGTGTGCGGCGCTAATAATGCGTTCTCA
CGCTGAGATCAAAGACTCTTGGCGACTGTTGGAGTATAGCATAGCATAGT
ATAGTTTAGTATAGTATAGTCTAGTGTATAGGATGGTATAGTATATTAGA
GTATAGTGTAGTACAGTGCAGTATAATATAGTATAGTATATAGGATGTAG
TATGGTATAGTATATAGTATATAGTATAGACGATAATGTCCGCTAGATGT
GCACAATTTGGTTCCTATGCCGATAACCCCACGTCAATTCCGGTCTGATG
TAGCAAACGCAAGGGTGAGATGTCTAAAAGCTGGTATCATCCTTGCGAAA
GGCGGCCTGGCGGCAATCGAAAAACCGTTACCTGTTTCTGGTACATCGCT
CCGTCCAGGCAATGTTGGGATGTGTGGTATATAGACTATGATCGTTAGGA
TACGACATACATTTAACATAAGCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCAAAAAAAGGCGCGACCCCCGTTTTTTGGGG
GTTTTTTTTTTTTTTCTTTTTTTCTTGTTAACATAAGCCCCCCCCCCCCC
CAACCACGACCACCATCCAGTCTCTCCGTCGATAAAAAAGCGGTTAGCCT
TGTATTTTGGGGGTTTCTTTTCGTCGCTTTTTGTTGCTGCTGTCTTTGTT
TTTCGTGAGGCCGGTAGAGGTCGTCGGCAACCGTATCCACGAGGTTTCCT
GACCGAAAACCGATCGCAAAACTAAATACACATTGTGGATTGGGTGCCGA
TTGTGGCCTCGTCTCTTGGCAGAGCCCACCACCGACAAGTTCACGGTGGT
TCTCCACGGGAAGGAGGACCGAACGGTGGATGGAACAAGCCTCTGTGTTG
TCCGGGAACTCCCTTACGAGGACCTCACACGCTTCGGGCCCGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig85229:130..2276-

>mRNA_H-elongata_contig85229.16112.1 ID=mRNA_H-elongata_contig85229.16112.1|Name=mRNA_H-elongata_contig85229.16112.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig85229:130..2276- (Himanthalia elongata Himel1 dioecious)
AGGAAAAAAATTCGCCCGGTGGAGGAGGCGTTTTTGTTCGACCATTTTCA
CTGCGAGCCCATCACAGACGCGGAGATGGAAGCCAAGAGTCAAGTCTTGG
TGATCGGCCAGTATTCCACGGGCAAGACGACGAGGAAAAAAATTCGCCCG
GTGGAGGAGGCGTTTTTGTTCGACCATTTTCACTGCGAGCCCATCACAGA
CGCGGAGATGGAAGCCAAGAGTCAAGTCTTGGTGATCGGCCAGTATTCCA
CGGGCAAGACGACGTTCATTCGCCATCTTCTGGGAACGGACTTCCCCAAC
ATGAACATCGGTCCGGTTCATTCGCCATCTTCTGGGAACGGACTTCCCCA
ACATGAACATCGGTCCGGAGCCCACCACCGACAAGTTCACGGTGGTTCTC
CACGGGAAGGAGGACCGAACGGTGGATGGAACAAGCCTCTGTGTTGTCCG
GGAACTCCCTTACGAGGACCTCACACGCTTCGGGCCCGGGTGAAGCCCAC
CACCGACAAGTTCACGGTGGTTCTCCACGGGAAGGAGGACCGAACGGTGG
ATGGAACAAGCCTCTGTGTTGTCCGGGAACTCCCTTACGAGGACCTCACA
CGCTTCGGGCCCGGGTGA
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