mRNA_H-elongata_contig85191.16109.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85191.16109.1
Unique NamemRNA_H-elongata_contig85191.16109.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig85191.16109.1 vs. uniprot
Match: D7G035_ECTSI (ThiF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G035_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 2.360e-39
Identity = 68/80 (85.00%), Postives = 70/80 (87.50%), Query Frame = 1 
Query:    1 MATDNKYDRQLRLWGSSGQKLLMEANILLVNASATGTETLKNLVLPGVGRFTILDGENVKPEDQGSNFFVGPGHVGCSRA 240
            MATDNKYDRQLRLWG SGQK LMEANILLVNA ATGTETLKNLVLPGVG+FTILD E V+  DQGSNFFVGP HVG  RA
Sbjct:    1 MATDNKYDRQLRLWGGSGQKALMEANILLVNAGATGTETLKNLVLPGVGQFTILDAEEVRQLDQGSNFFVGPEHVGLPRA 80
[Close]
BLAST of mRNA_H-elongata_contig85191.16109.1 vs. uniprot
Match: A0A6H5KYD4_9PHAE (NEDD8-activating enzyme E1 regulatory subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD4_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 2.470e-36
Identity = 68/80 (85.00%), Postives = 69/80 (86.25%), Query Frame = 1 
Query:    1 MATDNKYDRQLRLWGSSGQKLLMEANILLVNASATGTETLKNLVLPGVGRFTILDGENVKPEDQGSNFFVGPGHVGCSRA 240
            MATDNKYDRQLRLWG SGQK LMEANILLVNA ATGTETLKNLVLPGVG FTILD E V+  DQGSNFFVGP HVG  RA
Sbjct:    1 MATDNKYDRQLRLWGGSGQKALMEANILLVNAGATGTETLKNLVLPGVGHFTILDAEEVRQLDQGSNFFVGPEHVGLPRA 80
[Close]
BLAST of mRNA_H-elongata_contig85191.16109.1 vs. uniprot
Match: A0A8J2S875_9STRA (NEDD8-activating enzyme E1 regulatory subunit n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S875_9STRA)

HSP 1 Score: 114 bits (285), Expect = 6.070e-28
Identity = 55/80 (68.75%), Postives = 63/80 (78.75%), Query Frame = 1 
Query:    1 MATDNKYDRQLRLWGSSGQKLLMEANILLVNASATGTETLKNLVLPGVGRFTILDGENVKPEDQGSNFFVGPGHVGCSRA 240
            MATDNKYDRQLRLWG+ GQK L EA++LL+ A   GTETLKNLVLPGVGRFT++DGE V+  D G+NFFV    VG  RA
Sbjct:    1 MATDNKYDRQLRLWGAQGQKALSEAHVLLLGAGPAGTETLKNLVLPGVGRFTVVDGEKVEERDTGNNFFVRKSDVGRPRA 80
[Close]
BLAST of mRNA_H-elongata_contig85191.16109.1 vs. uniprot
Match: F0Y5U8_AURAN (OTU domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5U8_AURAN)

HSP 1 Score: 111 bits (277), Expect = 1.060e-26
Identity = 53/80 (66.25%), Postives = 63/80 (78.75%), Query Frame = 1 
Query:    1 MATDNKYDRQLRLWGSSGQKLLMEANILLVNASATGTETLKNLVLPGVGRFTILDGENVKPEDQGSNFFVGPGHVGCSRA 240
            MATDNKYDRQLRLWG++GQ+ L E+++LL+ A   GTETLKNLVLPGVGRFT++DG  V   D G+NFFV P  VG  RA
Sbjct:  431 MATDNKYDRQLRLWGANGQRALAESHVLLLGAGPAGTETLKNLVLPGVGRFTVVDGATVSEADLGNNFFVRPEDVGRPRA 510
[Close]
BLAST of mRNA_H-elongata_contig85191.16109.1 vs. uniprot
Match: A0A455AVC2_PHYMC (NEDD8-activating enzyme E1 regulatory subunit-like isoform X2 n=1 Tax=Physeter macrocephalus TaxID=9755 RepID=A0A455AVC2_PHYMC)

HSP 1 Score: 99.8 bits (247), Expect = 2.090e-25
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:   10 DNKYDRQLRLWGSSGQKLLMEANILLVNASATGTETLKNLVLPGVGRFTILDGENVKPEDQGSNFFVGPGHVGCSRA 240
            + KYDRQLRLWG  GQ+ L  A++ L+NA+ATGTE LKNLVLPG+G FTI+DG  V  ED G+NFF+    +G +RA
Sbjct:   10 EQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRA 86
[Close]
BLAST of mRNA_H-elongata_contig85191.16109.1 vs. uniprot
Match: A0A813IQ53_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IQ53_POLGL)

HSP 1 Score: 99.4 bits (246), Expect = 2.970e-25
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:    1 MATDNKYDRQLRLWGSSGQKLLMEANILLVNASATGTETLKNLVLPGVGRFTILDGENVKPEDQGSNFFVGPGHVGCSRA 240
            MATD+KYDRQLRLWG  GQK LMEA + ++ +SA  TETLKNLVLPG+G FT++D   V+  D G NFF+    +G  RA
Sbjct:    4 MATDDKYDRQLRLWGGHGQKALMEAKVCMLGSSACATETLKNLVLPGIGNFTVVDSAKVEAADFGQNFFLEESDLGKLRA 83
[Close]
BLAST of mRNA_H-elongata_contig85191.16109.1 vs. uniprot
Match: UPI0012383C28 (NEDD8-activating enzyme E1 regulatory subunit n=2 Tax=Passeriformes TaxID=9126 RepID=UPI0012383C28)

HSP 1 Score: 98.2 bits (243), Expect = 3.650e-25
Identity = 44/77 (57.14%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:   10 DNKYDRQLRLWGSSGQKLLMEANILLVNASATGTETLKNLVLPGVGRFTILDGENVKPEDQGSNFFVGPGHVGCSRA 240
            + +YDRQLRLWG  GQ+ L  A++ ++NA+ATGTE LKNLVLPG+G FTI+DG  V  ED G+NFF+   H+G  R+
Sbjct:   11 EQRYDRQLRLWGDHGQEALESAHVCVINATATGTEILKNLVLPGIGSFTIVDGNRVSGEDVGNNFFLQKSHIGQVRS 87
[Close]
BLAST of mRNA_H-elongata_contig85191.16109.1 vs. uniprot
Match: A0A482W255_9CUCU (ThiF domain containing protein n=1 Tax=Asbolus verrucosus TaxID=1661398 RepID=A0A482W255_9CUCU)

HSP 1 Score: 99.4 bits (246), Expect = 5.040e-25
Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:   16 KYDRQLRLWGSSGQKLLMEANILLVNASATGTETLKNLVLPGVGRFTILDGENVKPEDQGSNFFVGPGHVGCSRA 240
            KYDRQLRLWG  GQK+L  A + L+NA+A GTE LK++VLPG+G FTI+DGE V  ED G+NFF+    +G SRA
Sbjct:   17 KYDRQLRLWGDHGQKVLENAKVCLINATALGTEILKSIVLPGIGSFTIVDGEKVTDEDIGTNFFIESDSIGMSRA 91
[Close]
BLAST of mRNA_H-elongata_contig85191.16109.1 vs. uniprot
Match: A0A0B6ZMU1_9EUPU (ThiF domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6ZMU1_9EUPU)

HSP 1 Score: 101 bits (252), Expect = 5.340e-25
Identity = 48/77 (62.34%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:   10 DNKYDRQLRLWGSSGQKLLMEANILLVNASATGTETLKNLVLPGVGRFTILDGENVKPEDQGSNFFVGPGHVGCSRA 240
            +NKYDRQLRLWG  GQ  L  A + L+NASATGTE LKNL+LPG+G FTI+DG  V+ ED G+NFF+    +G SRA
Sbjct:   17 NNKYDRQLRLWGDHGQSALETARVCLINASATGTEILKNLILPGIGSFTIVDGHKVQGEDVGNNFFLTVDSIGKSRA 93
[Close]
BLAST of mRNA_H-elongata_contig85191.16109.1 vs. uniprot
Match: A7RV71_NEMVE (NEDD8-activating enzyme E1 regulatory subunit n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7RV71_NEMVE)

HSP 1 Score: 105 bits (263), Expect = 6.400e-25
Identity = 50/77 (64.94%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:   10 DNKYDRQLRLWGSSGQKLLMEANILLVNASATGTETLKNLVLPGVGRFTILDGENVKPEDQGSNFFVGPGHVGCSRA 240
            + KYDRQLRLWG  GQ  L +A I L+NASATGTE LKNL+LPG+G FTI+DGE V  ED G+NFF+   H+G SRA
Sbjct:    9 EKKYDRQLRLWGDHGQAALEQAKICLINASATGTEILKNLILPGIGLFTIVDGEKVTGEDVGNNFFLNKEHIGRSRA 85
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85191.16109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G035_ECTSI2.360e-3985.00ThiF domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KYD4_9PHAE2.470e-3685.00NEDD8-activating enzyme E1 regulatory subunit n=1 ... [more]
A0A8J2S875_9STRA6.070e-2868.75NEDD8-activating enzyme E1 regulatory subunit n=1 ... [more]
F0Y5U8_AURAN1.060e-2666.25OTU domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A455AVC2_PHYMC2.090e-2559.74NEDD8-activating enzyme E1 regulatory subunit-like... [more]
A0A813IQ53_POLGL2.970e-2558.75Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
UPI0012383C283.650e-2557.14NEDD8-activating enzyme E1 regulatory subunit n=2 ... [more]
A0A482W255_9CUCU5.040e-2561.33ThiF domain containing protein n=1 Tax=Asbolus ver... [more]
A0A0B6ZMU1_9EUPU5.340e-2562.34ThiF domain-containing protein (Fragment) n=1 Tax=... [more]
A7RV71_NEMVE6.400e-2564.94NEDD8-activating enzyme E1 regulatory subunit n=2 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85191contigH-elongata_contig85191:801..1450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.5
Seed ortholog evalue2.7e-30
Seed eggNOG ortholog2880.D7G035
Preferred nameNAE1
KEGG koko:K04532
KEGG Pathwayko05010,map05010
GOsGO:0000003,GO:0000075,GO:0000076,GO:0000278,GO:0000280,GO:0001101,GO:0001540,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006310,GO:0006464,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007093,GO:0007127,GO:0007131,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008219,GO:0008641,GO:0009414,GO:0009415,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009734,GO:0009735,GO:0009755,GO:0009791,GO:0009965,GO:0009966,GO:0009968,GO:0009987,GO:0010016,GO:0010033,GO:0010035,GO:0010252,GO:0010389,GO:0010564,GO:0010646,GO:0010648,GO:0010941,GO:0010948,GO:0010972,GO:0012501,GO:0016043,GO:0016874,GO:0016877,GO:0019538,GO:0019781,GO:0019899,GO:0022402,GO:0022414,GO:0023051,GO:0023052,GO:0023057,GO:0031570,GO:0031625,GO:0032446,GO:0032501,GO:0032502,GO:0032870,GO:0032991,GO:0033218,GO:0033314,GO:0033554,GO:0034641,GO:0035825,GO:0036211,GO:0042221,GO:0042277,GO:0042579,GO:0042592,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043516,GO:0043518,GO:0043523,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0044774,GO:0044818,GO:0045116,GO:0045786,GO:0045930,GO:0046483,GO:0046982,GO:0046983,GO:0048285,GO:0048366,GO:0048367,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048827,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051321,GO:0051402,GO:0051716,GO:0051726,GO:0061982,GO:0065007,GO:0065008,GO:0070647,GO:0070887,GO:0070997,GO:0071310,GO:0071365,GO:0071495,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0090304,GO:0099402,GO:0140013,GO:1901214,GO:1901360,GO:1901564,GO:1901700,GO:1901796,GO:1901797,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902531,GO:1902532,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:1905392,GO:2001020,GO:2001021
EggNOG free text desc.NEDD8 activating enzyme activity
EggNOG OGsCOG0476@1,KOG2016@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUBA/THIF-type NAD/FAD binding fold
Ec32 orthologEc-06_009090.1
Exons2
Model size240
Cds size240
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931255.2412298-CDS-H-elongata_contig85191:800..9011622931255.2412298-CDS-H-elongata_contig85191:800..901Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85191 801..901 -
1691679761.6531956-CDS-H-elongata_contig85191:800..9011691679761.6531956-CDS-H-elongata_contig85191:800..901Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85191 801..901 -
1622931255.2561834-CDS-H-elongata_contig85191:1311..14501622931255.2561834-CDS-H-elongata_contig85191:1311..1450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85191 1312..1450 -
1691679761.665166-CDS-H-elongata_contig85191:1311..14501691679761.665166-CDS-H-elongata_contig85191:1311..1450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85191 1312..1450 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85191.16109.1prot_H-elongata_contig85191.16109.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85191 801..1450 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85191.16109.1

>prot_H-elongata_contig85191.16109.1 ID=prot_H-elongata_contig85191.16109.1|Name=mRNA_H-elongata_contig85191.16109.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
MATDNKYDRQLRLWGSSGQKLLMEANILLVNASATGTETLKNLVLPGVGR
FTILDGENVKPEDQGSNFFVGPGHVGCSRA
back to top

mRNA from alignment at H-elongata_contig85191:801..1450-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85191.16109.1 ID=mRNA_H-elongata_contig85191.16109.1|Name=mRNA_H-elongata_contig85191.16109.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=650bp|location=Sequence derived from alignment at H-elongata_contig85191:801..1450- (Himanthalia elongata Himel1 dioecious)
ATGGCCACGGACAATAAGTACGACCGACAGCTGCGGCTGTGGGGCTCGAG
CGGGCAGAAGTTGCTGATGGAGGCGAACATCTTGCTCGTCAACGCCAGCG
CTACTGGAACCGAGACCCTCAAGAACCTCGTCTTACCAGGTGGGGTACCT
CATCGCCGCGTCTGTCAAACCACCCGAAAAAATACAGTGGTCAAAGCACT
GACTTCTGGACACGATATCCTATCCATATACGATGGAGGTTTGTGCAGCG
GAAATGAGAGTACAATAGCTGGGTTTGCATGCCAAAATAGGCGTCATTCT
CCAGAATTCGTCGTACTTACTGTGATTATGTTTACTATACGGCGCCAGAG
GTCTTCGGTTAGCGGACAGGGTTGAATCACAATTTCAATCTCAACCGAGA
CTTGCTGTCTACTGTTGCCATCTACGCCGAAAATGATTACGATACGGTGC
GAAAAAATACGCCTCGCCAGACCTCTCCCCCTGGCGAAATCGGGAGCGTC
TAAAACCTCGAGTTTCCGTCCCTTAATATTTCGTTGGCGAGGCCTCTAGG
CGTTGGGCGTTTCACTATCCTGGATGGCGAGAATGTTAAGCCAGAAGATC
AAGGAAGCAACTTCTTCGTTGGTCCCGGGCACGTGGGGTGCTCGAGGGCT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig85191:801..1450-

>mRNA_H-elongata_contig85191.16109.1 ID=mRNA_H-elongata_contig85191.16109.1|Name=mRNA_H-elongata_contig85191.16109.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig85191:801..1450- (Himanthalia elongata Himel1 dioecious)
ATGGCCACGGACAATAAGTACGACCGACAGCTGCGGCTGTGGGGCTCGAG
CGGGCAGAAGTTGCTGATGGAGGCGAACATCTTGCTCGTCAACGCCAGCG
CTACTGGAACCGAGACCCTCAAGAACCTCGTCTTACCAGATGGCCACGGA
CAATAAGTACGACCGACAGCTGCGGCTGTGGGGCTCGAGCGGGCAGAAGT
TGCTGATGGAGGCGAACATCTTGCTCGTCAACGCCAGCGCTACTGGAACC
GAGACCCTCAAGAACCTCGTCTTACCAGGCGTTGGGCGTTTCACTATCCT
GGATGGCGAGAATGTTAAGCCAGAAGATCAAGGAAGCAACTTCTTCGTTG
GTCCCGGGCACGTGGGGTGCTCGAGGGCTGCGTTGGGCGTTTCACTATCC
TGGATGGCGAGAATGTTAAGCCAGAAGATCAAGGAAGCAACTTCTTCGTT
GGTCCCGGGCACGTGGGGTGCTCGAGGGCT
back to top