prot_H-elongata_contig8519.16108.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig8519.16108.1
Unique Nameprot_H-elongata_contig8519.16108.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length174
Homology
BLAST of mRNA_H-elongata_contig8519.16108.1 vs. uniprot
Match: A0A6H5LAZ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAZ3_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 4.250e-33
Identity = 61/145 (42.07%), Postives = 95/145 (65.52%), Query Frame = 0
Query:   26 YKGAWFWAMNEELKGLKESSTFKVLDGLPEGEKAIGSRWVLSYKEESDGNLKIPKARRVGKEFMQREGVNYLQTSAPTPAAASVKTMLIVANKMGFTVYHLDVKQAFTQAELDYKVLMKLPGGCGELSGKYVELQKALYGLKQRG 170
            YK  W  AM +E+    ++ TF  +  LP+G KAIGS+WV S+K    G +   KAR V + F +  G+++  +S+ +P+AAS+KT++ VA + G  + H DVKQA+  A+L  ++ ++ P GCG +SGK V++++ALYGLKQ G
Sbjct:   11 YKVFWEAAMKKEIDDHDKTGTFTKVKELPDGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSEIPGIDFHHSSSASPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKNEIYLRFPEGCGSMSGKVVKVERALYGLKQSG 155          
BLAST of mRNA_H-elongata_contig8519.16108.1 vs. uniprot
Match: A0A6H5L9H4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9H4_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 6.210e-33
Identity = 65/148 (43.92%), Postives = 95/148 (64.19%), Query Frame = 0
Query:   26 YKGAWFWAMNEELKGLKESSTFKVLDGLPEGEKAIGSRWVLSYKEESDGNLKIPKARRVGKEFMQREGVNYLQTSAPTPAAASVKTMLIVANKMGFTVYHLDVKQAFTQAELDYKVLMKLPGGCGELSGKYVELQKALYGLKQRGLLW 173
            YK  W  AM +E+ G  ++ TF  +  LPEG KAIGS+WV S+K    G +   KAR V + F Q  G+++  +S+  P+AAS+KT++ VA + G  + H DVKQAF  A+L  ++ ++ P GCG + GK V++++ALYGLKQ G  W
Sbjct:  201 YKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDVKARMVARGFSQTPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAFIHAKLKEEIYLRFPEGCGSMFGKAVKVERALYGLKQSGREW 348          
BLAST of mRNA_H-elongata_contig8519.16108.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 9.750e-33
Identity = 65/148 (43.92%), Postives = 97/148 (65.54%), Query Frame = 0
Query:   26 YKGAWFWAMNEELKGLKESSTFKVLDGLPEGEKAIGSRWVLSYKEESDGNLKIPKARRVGKEFMQREGVNYLQTSAPTPAAASVKTMLIVANKMGFTVYHLDVKQAFTQAELDYKVLMKLPGGCGELSGKYVELQKALYGLKQRGLLW 173
            YK  W  AM +E+ G  ++ TF  +  LPEG KAIGS+WV S+K    G +   KAR V + F Q  G+++ ++S+  P+AAS+KT++ VA + G  + H DVKQA+  A+L  ++ ++ P GCG +SGK V++++ALYGLKQ G  W
Sbjct:   27 YKVFWETAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLILDFKARVVARGFSQIPGIDFHRSSSACPSAASLKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREW 174          
BLAST of mRNA_H-elongata_contig8519.16108.1 vs. uniprot
Match: A0A6H5K236_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K236_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.340e-32
Identity = 62/148 (41.89%), Postives = 96/148 (64.86%), Query Frame = 0
Query:   26 YKGAWFWAMNEELKGLKESSTFKVLDGLPEGEKAIGSRWVLSYKEESDGNLKIPKARRVGKEFMQREGVNYLQTSAPTPAAASVKTMLIVANKMGFTVYHLDVKQAFTQAELDYKVLMKLPGGCGELSGKYVELQKALYGLKQRGLLW 173
            YK  W  AM +E+ G  ++ TF  +  LPEG KAIGS+WV S+K +  G +   KAR V + F +  G+++  +S+  P+AAS+ T++ VA + G  + H +VKQA+  A+L  ++ ++ P GCG +SGK V++++ALYGLKQ G  W
Sbjct:   27 YKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTKEKGLIVDFKARMVARGFSRIPGIDFHHSSSACPSAASINTVIAVATEKGKMLAHWNVKQAYINAKLKEEIYLRFPEGCGSMSGKVVKVKRALYGLKQSGHEW 174          
BLAST of mRNA_H-elongata_contig8519.16108.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 3.090e-32
Identity = 65/148 (43.92%), Postives = 97/148 (65.54%), Query Frame = 0
Query:   26 YKGAWFWAMNEELKGLKESSTFKVLDGLPEGEKAIGSRWVLSYKEESDGNLKIPKARRVGKEFMQREGVNYLQTSAPTPAAASVKTMLIVANKMGFTVYHLDVKQAFTQAELDYKVLMKLPGGCGELSGKYVELQKALYGLKQRGLLW 173
            YK  W  AM +E+ G  ++ TF  +  LPEG KAIGS+WV S+K    G +   KAR V + F Q  G+++ ++S+  P+AAS+KT++ VA + G  + H DVKQA+  A+L  ++ ++ P GCG +SGK V++++ALYGLKQ G  W
Sbjct:  469 YKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHRSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREW 616          
BLAST of mRNA_H-elongata_contig8519.16108.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 4.120e-32
Identity = 65/148 (43.92%), Postives = 96/148 (64.86%), Query Frame = 0
Query:   26 YKGAWFWAMNEELKGLKESSTFKVLDGLPEGEKAIGSRWVLSYKEESDGNLKIPKARRVGKEFMQREGVNYLQTSAPTPAAASVKTMLIVANKMGFTVYHLDVKQAFTQAELDYKVLMKLPGGCGELSGKYVELQKALYGLKQRGLLW 173
            YK  W  AM +E+ G  ++ TF  +  LPEG KAIGS+WV S+K    G +   KAR V + F Q  G+++  +S+  P+AAS+KT++ VA + G  + H DVKQA+  A+L  ++ ++ P GCG +SGK V++++ALYGLKQ G  W
Sbjct:  224 YKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREW 371          
BLAST of mRNA_H-elongata_contig8519.16108.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 5.160e-32
Identity = 65/148 (43.92%), Postives = 96/148 (64.86%), Query Frame = 0
Query:   26 YKGAWFWAMNEELKGLKESSTFKVLDGLPEGEKAIGSRWVLSYKEESDGNLKIPKARRVGKEFMQREGVNYLQTSAPTPAAASVKTMLIVANKMGFTVYHLDVKQAFTQAELDYKVLMKLPGGCGELSGKYVELQKALYGLKQRGLLW 173
            YK  W  AM +E+ G  ++ TF  +  LPEG KAIGS+WV S+K    G +   KAR V + F Q  G+++  +S+  P+AAS+KT++ VA + G  + H DVKQA+  A+L  ++ ++ P GCG +SGK V++++ALYGLKQ G  W
Sbjct:  370 YKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREW 517          
BLAST of mRNA_H-elongata_contig8519.16108.1 vs. uniprot
Match: A0A6H5L029_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L029_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 5.170e-32
Identity = 62/148 (41.89%), Postives = 96/148 (64.86%), Query Frame = 0
Query:   26 YKGAWFWAMNEELKGLKESSTFKVLDGLPEGEKAIGSRWVLSYKEESDGNLKIPKARRVGKEFMQREGVNYLQTSAPTPAAASVKTMLIVANKMGFTVYHLDVKQAFTQAELDYKVLMKLPGGCGELSGKYVELQKALYGLKQRGLLW 173
            YK  W  AM +E+ G  ++ T   +  LPE  KAIGS+W+ S+K+   G +   KAR V + F +  G+++  +S+  P+AAS+KT++ VA + G  + H DVKQA+  A+L  ++ ++ P GCG +SGK V++++ALYGLKQRG  W
Sbjct:  119 YKVFWQAAMKKEIDGHGKTGTLAKVKELPEERKAIGSKWLFSWKKNEKGLIVDFKARMVARGFSRIPGIHFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQRGREW 266          
BLAST of mRNA_H-elongata_contig8519.16108.1 vs. uniprot
Match: A0A6H5KPX2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX2_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 5.400e-32
Identity = 62/143 (43.36%), Postives = 94/143 (65.73%), Query Frame = 0
Query:   26 YKGAWFWAMNEELKGLKESSTFKVLDGLPEGEKAIGSRWVLSYKEESDGNLKIPKARRVGKEFMQREGVNYLQTSAPTPAAASVKTMLIVANKMGFTVYHLDVKQAFTQAELDYKVLMKLPGGCGELSGKYVELQKALYGLKQ 168
            YK  W  AM +E+ G  ++ TF  +  LPEG KAIGS+WV S+K    G +   KAR V + F Q  G+++  +S+  P+AAS+KT++ VA + G  + H DVKQA+T A+L  ++ ++ P GCG +SGK V++++ALYGL +
Sbjct:  119 YKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYTHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLSR 261          
BLAST of mRNA_H-elongata_contig8519.16108.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 7.060e-32
Identity = 65/148 (43.92%), Postives = 96/148 (64.86%), Query Frame = 0
Query:   26 YKGAWFWAMNEELKGLKESSTFKVLDGLPEGEKAIGSRWVLSYKEESDGNLKIPKARRVGKEFMQREGVNYLQTSAPTPAAASVKTMLIVANKMGFTVYHLDVKQAFTQAELDYKVLMKLPGGCGELSGKYVELQKALYGLKQRGLLW 173
            YK  W  AM +E+ G  ++ TF  +  LPEG KAIGS+WV S+K    G +   KAR V + F Q  G+++  +S+  P+AAS+KT++ VA + G  + H DVKQA+  A+L  ++ ++ P GCG +SGK V++++ALYGLKQ G  W
Sbjct:  511 YKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREW 658          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8519.16108.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LAZ3_9PHAE4.250e-3342.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L9H4_9PHAE6.210e-3343.92Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUN0_9PHAE9.750e-3343.92Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K236_9PHAE1.340e-3241.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K3C5_9PHAE3.090e-3243.92Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE4.120e-3243.92Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE5.160e-3243.92Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L029_9PHAE5.170e-3241.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPX2_9PHAE5.400e-3243.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE7.060e-3243.92Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 47..174
e-value: 7.9E-28
score: 97.7
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 27..168
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 27..168

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8519contigH-elongata_contig8519:2991..3512 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8519.16108.1mRNA_H-elongata_contig8519.16108.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig8519 2988..3512 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig8519.16108.1 ID=prot_H-elongata_contig8519.16108.1|Name=mRNA_H-elongata_contig8519.16108.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=174bp
MFSSVYYCYHIPAKVVRRDKRGGVSYKGAWFWAMNEELKGLKESSTFKVL
DGLPEGEKAIGSRWVLSYKEESDGNLKIPKARRVGKEFMQREGVNYLQTS
APTPAAASVKTMLIVANKMGFTVYHLDVKQAFTQAELDYKVLMKLPGGCG
ELSGKYVELQKALYGLKQRGLLWN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like