mRNA_H-elongata_contig85114.16103.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig85114.16103.1 vs. uniprot
Match: D8LJ82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ82_ECTSI) HSP 1 Score: 269 bits (688), Expect = 4.760e-85 Identity = 135/174 (77.59%), Postives = 153/174 (87.93%), Query Frame = 1
Query: 1 QVLSCIPMCLSSVYKEKALGDDDIDVIYLNGWVAVFQFLAGLLFAVPSAFAMGLPVSELPRNTYEGYLCFLGHDSQLGETMADMVARLG-----VVLVDHCRMAPVYVSLYLCFNIMYNLVLIVILKYGSANVLFLASTVMVPIGNVAFSLKFVPHHQDLKLSDTMGLVFILTG 507
QVLSCIPMCLSSVYKEKALGDDD+DVIYLNGWVAVFQFL+ LLFAVPSA+AMGLPV+ELPRNTYEGYLCF+G +S + MA+M A G ++ DHC AP +V+LYLCFN++YN+VLIVILK+GSANVLFLASTVMVPIGNVAFSLKFVPHHQDL SDTMGL+FIL+G
Sbjct: 173 QVLSCIPMCLSSVYKEKALGDDDMDVIYLNGWVAVFQFLSSLLFAVPSAYAMGLPVAELPRNTYEGYLCFMGENSHFTD-MANMAATTGGRISDMIPPDHCETAPFFVTLYLCFNLVYNVVLIVILKHGSANVLFLASTVMVPIGNVAFSLKFVPHHQDLHWSDTMGLLFILSG 345
BLAST of mRNA_H-elongata_contig85114.16103.1 vs. uniprot
Match: A0A6H5K4Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Y7_9PHAE) HSP 1 Score: 271 bits (692), Expect = 9.800e-85 Identity = 136/174 (78.16%), Postives = 153/174 (87.93%), Query Frame = 1
Query: 1 QVLSCIPMCLSSVYKEKALGDDDIDVIYLNGWVAVFQFLAGLLFAVPSAFAMGLPVSELPRNTYEGYLCFLGHDSQLGETMADMVARLG-----VVLVDHCRMAPVYVSLYLCFNIMYNLVLIVILKYGSANVLFLASTVMVPIGNVAFSLKFVPHHQDLKLSDTMGLVFILTG 507
QVLSCIPMCLSSVYKEKALGDDD+DVIYLNGWVAVFQFLA LLFAVPSA+AMGLPV+ELP+NTYEGYLCF+G +S + MA+M A G ++ DHC AP +V+LYLCFN++YN+VLIVILKYGSANVLFLASTVMVPIGNVAFSLKFVPHHQDL SDTMGL+FIL+G
Sbjct: 295 QVLSCIPMCLSSVYKEKALGDDDMDVIYLNGWVAVFQFLASLLFAVPSAYAMGLPVAELPQNTYEGYLCFMGENSHFTD-MANMAATTGGNIADMIPPDHCETAPFFVTLYLCFNLVYNVVLIVILKYGSANVLFLASTVMVPIGNVAFSLKFVPHHQDLHWSDTMGLLFILSG 467
BLAST of mRNA_H-elongata_contig85114.16103.1 vs. uniprot
Match: A0A836CGK6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGK6_9STRA) HSP 1 Score: 214 bits (546), Expect = 5.800e-64 Identity = 114/202 (56.44%), Postives = 137/202 (67.82%), Query Frame = 1
Query: 1 QVLSCIPMCLSSVYKEKALGDDDIDVIYLNGWVAVFQFLAGLLFAVPSAFAMGLPVSELPRNTYEGYLCFLGHDSQLGETMADMVAR---------------------------------LGVVLVDHCRMAPVYVSLYLCFNIMYNLVLIVILKYGSANVLFLASTVMVPIGNVAFSLKFVPHHQDLKLSDTMGLVFILTG 507
QVLSCIPMCLSSVYKEKALG+ DIDV++LNGWVAV+QFLA ++FA PSA+AMGLP++ELP NTY G+LCFLG ++ L + + +DHC +AP++V+ YL FNI YN+VLIVILKYGSANVL+LASTVMVPIGNVAFSL FVP HQDL+ +D GL IL G
Sbjct: 250 QVLSCIPMCLSSVYKEKALGELDIDVVFLNGWVAVYQFLASVVFAAPSAYAMGLPLAELPENTYSGWLCFLGQNTALPSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETMSMPHMDHCELAPLFVTTYLVFNIAYNVVLIVILKYGSANVLWLASTVMVPIGNVAFSLHFVPGHQDLRPADMGGLALILGG 451
BLAST of mRNA_H-elongata_contig85114.16103.1 vs. uniprot
Match: A0A7S1XX65_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX65_9STRA) HSP 1 Score: 190 bits (482), Expect = 1.060e-54 Identity = 96/172 (55.81%), Postives = 129/172 (75.00%), Query Frame = 1
Query: 4 VLSCIPMCLSSVYKEKALGDDDIDVIYLNGWVAVFQFLAGLLFAVPSAFAMGLPVSELPRNTYEGYLCFLGHDS-QLGETMADMVARLGV---VLVDHCRMAPVYVSLYLCFNIMYNLVLIVILKYGSANVLFLASTVMVPIGNVAFSLKFVPHHQDLKLSDTMGLVFILTG 507
VLSC+PMCLSSVYKEKALG+ DIDV+YLNGWVA FQFLA LL A PSA AM LP+SELP NT EG+ C++G++ ++ E + + +R G+ + C+ AP +VS YL FN+ N+++IVILKYGSAN+L+++ST +VP+ NV FSL F+P+ + L +D GLV I+ G
Sbjct: 306 VLSCVPMCLSSVYKEKALGEADIDVVYLNGWVAFFQFLATLLTAWPSAIAMQLPLSELPANTIEGFWCWMGYNPPEVEEALMNEASRSGLYDDLGAADCKYAPFFVSSYLVFNLALNILMIVILKYGSANILYMSSTALVPLSNVVFSLPFMPNARPLHTADVEGLVLIMAG 477
BLAST of mRNA_H-elongata_contig85114.16103.1 vs. uniprot
Match: A0A7S1MYB1_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1MYB1_HEMAN) HSP 1 Score: 175 bits (443), Expect = 1.660e-52 Identity = 84/168 (50.00%), Postives = 120/168 (71.43%), Query Frame = 1
Query: 4 VLSCIPMCLSSVYKEKALGDDDIDVIYLNGWVAVFQFLAGLLFAVPSAFAMGLPVSELPRNTYEGYLCFLGHDSQLGETMADMVARLGVVLVDHCRMAPVYVSLYLCFNIMYNLVLIVILKYGSANVLFLASTVMVPIGNVAFSLKFVPHHQDLKLSDTMGLVFILTG 507
+LSC+PM LSSVYKEK + + D+D + LNG++A++QF+A + A+P+A A G+ + ++P NT G+ C++G DS T L DHC APV VS+YL FN++YN+++I+I+KYGSAN++F+A T+MVP+GNVAFSL +VP HQDL D GL IL+G
Sbjct: 25 ILSCVPMALSSVYKEKVMNNVDMDAVLLNGYIALYQFIACIPSAIPAALAQGMAIEDIPSNTINGFKCYMGIDSVTNSTDPS--------LDDHCHSAPVDVSVYLGFNVLYNILMILIMKYGSANIMFMALTLMVPMGNVAFSLPWVPGHQDLTPFDYSGLAVILSG 184
BLAST of mRNA_H-elongata_contig85114.16103.1 vs. uniprot
Match: A0A3F2RYX5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RYX5_9STRA) HSP 1 Score: 180 bits (457), Expect = 2.030e-52 Identity = 90/170 (52.94%), Postives = 118/170 (69.41%), Query Frame = 1
Query: 4 VLSCIPMCLSSVYKEKALGDDDIDVIYLNGWVAVFQFLAGLLFAVPSAFAMGLPV--SELPRNTYEGYLCFLGHDSQLGETMADMVARLGVVLVDHCRMAPVYVSLYLCFNIMYNLVLIVILKYGSANVLFLASTVMVPIGNVAFSLKFVPHHQDLKLSDTMGLVFILTG 507
+ SC+PMCLSSVYKEK LG+ ++D +YLNGW+AVFQFL + P+A PV SELP N Y+G +C+LG D T+ D + D C A VYV+ YL FN++YNL++I+ILK+GSAN+L+LA T+MVP+GNVAF+ F+P HQ L D GLVFI+TG
Sbjct: 174 IFSCVPMCLSSVYKEKTLGEAELDAVYLNGWIAVFQFLFSIPLTFPAAMVGDHPVTPSELPENLYDGLMCYLGQD-----TIIDGPHK------DDCEKATVYVTAYLLFNVVYNLLIILILKFGSANILWLAMTIMVPLGNVAFTFPFMPEHQPLHAKDIAGLVFIMTG 332
BLAST of mRNA_H-elongata_contig85114.16103.1 vs. uniprot
Match: A0A485K7Q2_9STRA (Aste57867_403 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K7Q2_9STRA) HSP 1 Score: 179 bits (455), Expect = 2.300e-52 Identity = 86/168 (51.19%), Postives = 121/168 (72.02%), Query Frame = 1
Query: 10 SCIPMCLSSVYKEKALGDDDIDVIYLNGWVAVFQFLAGLLFAVPSAFAMGLPV--SELPRNTYEGYLCFLGHDSQLGETMADMVARLGVVLVDHCRMAPVYVSLYLCFNIMYNLVLIVILKYGSANVLFLASTVMVPIGNVAFSLKFVPHHQDLKLSDTMGLVFILTG 507
SCIPMCLSSVYKE ALG+ ++D +YLNGW+AVFQFL + A+P+A PV +LP N Y+G+LC+LGH++ G D C+MAP+YV++Y+ FN+ YNL++I++LK+GSAN+L+LA T+MVP+GNVAF+ F+P H+ L +D +GLV I+ G
Sbjct: 173 SCIPMCLSSVYKEIALGEAELDAVYLNGWIAVFQFLLSIPLAIPAAMIGSPPVVPKDLPTNLYDGWLCYLGHNTITGGDHPD-----------DCKMAPLYVTIYMIFNVGYNLLIILMLKFGSANILWLAMTIMVPLGNVAFTFPFMPEHKPLHTTDVIGLVVIMLG 329
BLAST of mRNA_H-elongata_contig85114.16103.1 vs. uniprot
Match: A0A6G0X121_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X121_9STRA) HSP 1 Score: 179 bits (454), Expect = 3.250e-52 Identity = 88/170 (51.76%), Postives = 122/170 (71.76%), Query Frame = 1
Query: 4 VLSCIPMCLSSVYKEKALGDDDIDVIYLNGWVAVFQFLAGLLFAVPSAFAMGLPVS--ELPRNTYEGYLCFLGHDSQLGETMADMVARLGVVLVDHCRMAPVYVSLYLCFNIMYNLVLIVILKYGSANVLFLASTVMVPIGNVAFSLKFVPHHQDLKLSDTMGLVFILTG 507
++SCIPMCLSSVYKE ALG+ ++D +YLNGW+AVFQFL + AVP+A PVS +LP+N Y+G C+LGH++ L D C A ++V++YL FN+ YNL++I++LK+GSAN+L+LA T+MVP+GNVAF+ F+P HQ LK +D +GLV I+TG
Sbjct: 171 IISCIPMCLSSVYKEIALGEAELDAVYLNGWIAVFQFLLSIPLAVPAAMIGSPPVSPKDLPKNLYDGMRCYLGHNTILDGPHPD-----------DCEKATLFVTIYLFFNVGYNLLIILMLKFGSANILWLAMTIMVPLGNVAFTFPFMPEHQPLKTTDVVGLVVIMTG 329
BLAST of mRNA_H-elongata_contig85114.16103.1 vs. uniprot
Match: A0A7S0YT28_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YT28_9CRYP) HSP 1 Score: 170 bits (431), Expect = 7.320e-51 Identity = 85/168 (50.60%), Postives = 118/168 (70.24%), Query Frame = 1
Query: 4 VLSCIPMCLSSVYKEKALGDDDIDVIYLNGWVAVFQFLAGLLFAVPSAFAMGLPVSELPRNTYEGYLCFLGHDSQLGETMADMVARLGVVLVDHCRMAPVYVSLYLCFNIMYNLVLIVILKYGSANVLFLASTVMVPIGNVAFSLKFVPHHQDLKLSDTMGLVFILTG 507
+LSC+PM LSSVYKEK + + D+D I LNG++A +QFLA + AVP+A A G+ V ++P NT G+ C+LG ++ + T L DHC AP+ V+ YL FN+ YN+++I+I+KYGSAN++F+A T+MVP+GNVAFS+ +VP HQDL D GL ILTG
Sbjct: 13 MLSCVPMALSSVYKEKVMNNVDMDAILLNGYIAFYQFLACIPSAVPAALAQGMAVEDIPSNTVAGFRCYLGANTIVNSTDPS--------LDDHCGSAPLDVNAYLAFNVCYNILMILIMKYGSANIMFMALTLMVPMGNVAFSIPWVPGHQDLTPFDYSGLAVILTG 172
BLAST of mRNA_H-elongata_contig85114.16103.1 vs. uniprot
Match: A0A7R9U0X6_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0X6_9STRA) HSP 1 Score: 180 bits (456), Expect = 1.110e-50 Identity = 90/168 (53.57%), Postives = 121/168 (72.02%), Query Frame = 1
Query: 4 VLSCIPMCLSSVYKEKALGDDDIDVIYLNGWVAVFQFLAGLLFAVPSAFAMGLPVSELPRNTYEGYLCFLGHDSQLGETMADMVARLGVVLVDHCRMAPVYVSLYLCFNIMYNLVLIVILKYGSANVLFLASTVMVPIGNVAFSLKFVPHHQDLKLSDTMGLVFILTG 507
VLSC+PMCLSSVYKEKALG+ DIDV+YLNGWVA+FQF+ L A PSA AM LP+SELP NT G+ C++G++ + + + C AP +V+ YL FN+M N+++I+ILKYGSAN+L+++ST +VP+ NV FSLKF+P+ Q L +D GLV I+ G
Sbjct: 239 VLSCVPMCLSSVYKEKALGEADIDVVYLNGWVALFQFVFTLFTAWPSAIAMHLPLSELPDNTMHGFWCWMGYNPPSEFVPQHIYSSISEA---SCSWAPFFVTSYLLFNVMLNVLMILILKYGSANILYMSSTALVPLSNVVFSLKFMPNAQRLHAADIEGLVVIMLG 403 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85114.16103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig85114.16103.1 >prot_H-elongata_contig85114.16103.1 ID=prot_H-elongata_contig85114.16103.1|Name=mRNA_H-elongata_contig85114.16103.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp MCLSSVYKEKALGDDDIDVIYLNGWVAVFQFLAGLLFAVPSAFAMGLPVSback to top mRNA from alignment at H-elongata_contig85114:240..1779+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig85114.16103.1 ID=mRNA_H-elongata_contig85114.16103.1|Name=mRNA_H-elongata_contig85114.16103.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1540bp|location=Sequence derived from alignment at H-elongata_contig85114:240..1779+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig85114:240..1779+ >mRNA_H-elongata_contig85114.16103.1 ID=mRNA_H-elongata_contig85114.16103.1|Name=mRNA_H-elongata_contig85114.16103.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1002bp|location=Sequence derived from alignment at H-elongata_contig85114:240..1779+ (Himanthalia elongata Himel1 dioecious)back to top |