mRNA_H-elongata_contig8497.16093.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8497.16093.1
Unique NamemRNA_H-elongata_contig8497.16093.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig8497.16093.1 vs. uniprot
Match: A0A6H5KLW3_9PHAE (Hexosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLW3_9PHAE)

HSP 1 Score: 252 bits (643), Expect = 3.290e-82
Identity = 110/130 (84.62%), Postives = 120/130 (92.31%), Query Frame = 1
Query:    1 NGRVMKDSNHRWFDTKYVQHTLGGLDCFPVYMQGAFYIISQPLIEHLFRRHEHLECFTNEDVTIGSWLLGVDRVMVEMYNLRNSHLWDCLCARTTITKKTRGKQQFFHNCKGMSQLKLCGTRLLRPGIGC 390
            NGRVMK+ +HRWFD+KYVQHTLGGLDCFP YMQGAFYI++QPL+EHL+R HEHLECFTNEDVTIGSWL+GVDR MVEMYNL  SHLWDCLCART IT KTR KQ FFHNCKG+SQLKLCGTRLLRPG+GC
Sbjct:  172 NGRVMKNPDHRWFDSKYVQHTLGGLDCFPAYMQGAFYILAQPLVEHLYRGHEHLECFTNEDVTIGSWLMGVDREMVEMYNLHTSHLWDCLCARTQITVKTRRKQMFFHNCKGLSQLKLCGTRLLRPGVGC 301          
BLAST of mRNA_H-elongata_contig8497.16093.1 vs. uniprot
Match: D8LT07_ECTSI (Beta-1,3-n-acetylglucosaminyltransferase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT07_ECTSI)

HSP 1 Score: 252 bits (643), Expect = 2.420e-78
Identity = 110/130 (84.62%), Postives = 120/130 (92.31%), Query Frame = 1
Query:    1 NGRVMKDSNHRWFDTKYVQHTLGGLDCFPVYMQGAFYIISQPLIEHLFRRHEHLECFTNEDVTIGSWLLGVDRVMVEMYNLRNSHLWDCLCARTTITKKTRGKQQFFHNCKGMSQLKLCGTRLLRPGIGC 390
            NGRVMK+ +HRWFD+KYVQHTLGGLDCFP YMQGAFYI++QPL+EHL+R HEHLECFTNEDVTIGSWL+GVDR MVEMYNLR SHLWDCLCART IT KTR K  FFHNCKG+SQLKLCGTRLLRPG+GC
Sbjct:  508 NGRVMKNPDHRWFDSKYVQHTLGGLDCFPAYMQGAFYILAQPLVEHLYRGHEHLECFTNEDVTIGSWLMGVDREMVEMYNLRTSHLWDCLCARTQITVKTRKKHMFFHNCKGLSQLKLCGTRLLRPGVGC 637          
BLAST of mRNA_H-elongata_contig8497.16093.1 vs. uniprot
Match: A0A835YNB7_9STRA (Hexosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNB7_9STRA)

HSP 1 Score: 146 bits (369), Expect = 9.900e-42
Identity = 64/122 (52.46%), Postives = 85/122 (69.67%), Query Frame = 1
Query:    4 GRVMKDSNHRWFDTKYVQHTLGGLDCFPVYMQGAFYIISQPLIEHLFRRHEHLECFTNEDVTIGSWLLGVDRVMVEMYNLRNSHLWDCLCARTTITKKTRGKQQFFHNCKGMSQLKLCGTRL 369
            GRV+KD NH+W D K+V HTLGGLDC+P Y QGAFY++S+PL+++L +    L  FTNEDVT+GSWL+GVDR M+   ++  + LW+C CA+ T   K      FFHNCK + QL+ C   L
Sbjct:   99 GRVIKDPNHKWHDAKFVSHTLGGLDCYPAYHQGAFYLLSEPLVQYLHQGRSKLLTFTNEDVTMGSWLMGVDREMIAFNSISEARLWECTCAKYTKWLKY-DTNAFFHNCKSLDQLQKCAEFL 219          
BLAST of mRNA_H-elongata_contig8497.16093.1 vs. uniprot
Match: A0A835YTA1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTA1_9STRA)

HSP 1 Score: 141 bits (355), Expect = 8.190e-37
Identity = 62/128 (48.44%), Postives = 86/128 (67.19%), Query Frame = 1
Query:    4 GRVMKDSNHRWFDTKYVQHTLGGLDCFPVYMQGAFYIISQPLIEHLFRRHEHLECFTNEDVTIGSWLLGVDRVMVEMYNLRNSHLWDCLCARTTITKKTRGKQQFFHNCKGMSQLKLCGTRLLRPGIG 387
            GRV+ D  +RW+D K+V HT+GGL C+PVYMQGAFY+++QPL+E L     H   F NEDVT+GSWLLGVDR +V + ++  + LW C C+  T+ +  R    FFH+CK + +L+ C  R  R  +G
Sbjct:  448 GRVIMDKTNRWYDPKFVTHTMGGLPCYPVYMQGAFYVLAQPLVEFLNLGRPHWVTFQNEDVTVGSWLLGVDRDIVTIDDITTARLWGCQCSLDTMPQWARKSSVFFHDCKALEKLRRCDERF-RAQVG 574          
BLAST of mRNA_H-elongata_contig8497.16093.1 vs. uniprot
Match: D7G6P0_ECTSI (Hexosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6P0_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 1.660e-36
Identity = 56/104 (53.85%), Postives = 77/104 (74.04%), Query Frame = 1
Query:    4 GRVMKDSNHRWFDTKYVQHTLGGLDCFPVYMQGAFYIISQPLIEHLFRRHEHLECFTNEDVTIGSWLLGVDRVMVEMYNLRNSHLWDCLCARTTITKKTRGKQQ 315
            GRV+KD   +W+D K+V HTL GLDC+PVYMQGAFY+++QPL+EHL+R  EH + F NEDVT+GSWLLGVDR +  +++  +S LW+C+C    + +    K Q
Sbjct:  332 GRVIKDHKDKWYDQKFVHHTLAGLDCYPVYMQGAFYVLAQPLVEHLYRGREHYDTFINEDVTVGSWLLGVDRALGTIHDFESSRLWNCVCGSNFVLRPAVRKDQ 435          
BLAST of mRNA_H-elongata_contig8497.16093.1 vs. uniprot
Match: D7FQB9_ECTSI (Hexosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB9_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 5.910e-33
Identity = 58/118 (49.15%), Postives = 77/118 (65.25%), Query Frame = 1
Query:    4 GRVMKDSNHRWFDTKYVQHTLGGLDCFPVYMQGAFYIISQPLIEHLFRRHEHLECFTNEDVTIGSWLLGVDRVMVEMYNLRNSHLWDCLCARTTITKKTRGKQQFFHNCKGMSQLKLC 357
            G+V+ D + +W+D KY+ HT+ GLDC+PVYMQGAFYI+S PL+E L +    L  F NEDVTIG WL GVDR +  + +LR++ +W+C C R            FFH CKGM  L+ C
Sbjct:  331 GKVIVDMDEKWYDGKYLNHTMNGLDCYPVYMQGAFYILSYPLVEFLNQGSSKLLTFDNEDVTIGLWLHGVDRAIFPLNDLRDARMWECSCKRPNFNPGGDANV-FFHGCKGMDDLRGC 447          
BLAST of mRNA_H-elongata_contig8497.16093.1 vs. uniprot
Match: A0A835YWI3_9STRA (Hexosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWI3_9STRA)

HSP 1 Score: 128 bits (321), Expect = 5.910e-33
Identity = 55/127 (43.31%), Postives = 79/127 (62.20%), Query Frame = 1
Query:    4 GRVMKDSNHRWFDTKYVQHTLGGLDCFPVYMQGAFYIISQPLIEHLFRRHEHLECFTNEDVTIGSWLLGVDRVMVEMYNLRNSHLWDCLCARTTITK-----KTRGKQQFFHNCKGMSQLKLCGTRL 369
            GRV  D  H+W+D +YV+HT+G ++C+P Y QGA YI+S+ L+E L++  +HL  F NEDVT+G+WL+GVDR +V + +L  + LW+C CA           K      FFHNCK   Q+  C   +
Sbjct:  257 GRVFSDPTHKWYDERYVEHTMGSMECYPPYHQGAGYILSRSLVEFLYKGRDHLLTFINEDVTMGTWLMGVDRSVVSLRDLDGARLWECTCASYRFAHDAAFHKNHQNNAFFHNCKQAWQMLKCAIAM 383          
BLAST of mRNA_H-elongata_contig8497.16093.1 vs. uniprot
Match: A0A6H5JHW0_9PHAE (Hexosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHW0_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 6.580e-33
Identity = 58/118 (49.15%), Postives = 77/118 (65.25%), Query Frame = 1
Query:    4 GRVMKDSNHRWFDTKYVQHTLGGLDCFPVYMQGAFYIISQPLIEHLFRRHEHLECFTNEDVTIGSWLLGVDRVMVEMYNLRNSHLWDCLCARTTITKKTRGKQQFFHNCKGMSQLKLC 357
            G+V+ D + +W+D KY+ HT+ GLDC+PVYMQGAFYI+S PL+E L +    L  F NEDVTIG WL GVDR +  + +LR++ +W+C C R            FFHNCK M  L+ C
Sbjct:  291 GKVIVDMDDKWYDGKYLNHTMNGLDCYPVYMQGAFYILSYPLVEFLNQGSSKLLTFDNEDVTIGLWLHGVDRAIFPLNDLRDARVWECSCKRPNFNPGGDANV-FFHNCKSMDDLRGC 407          
BLAST of mRNA_H-elongata_contig8497.16093.1 vs. uniprot
Match: A0A835Z4X8_9STRA (Hexosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4X8_9STRA)

HSP 1 Score: 103 bits (258), Expect = 4.940e-24
Identity = 49/100 (49.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:   73 LDCFPVYMQGAFYIISQPLIEHLFRRHEHLECFTNEDVTIGSWLLGVDRVMVEMYNLRNSHLWDCLCARTTITKKTR-GKQQFFHNCKGMSQLKLCGTRL 369
            LD +P Y QGAFY++SQPL+ HL R    L  F NEDVT+G+W++ ++R MV + +L  +HLWDC CA  T TK  R     F HNCK ++QL+ C   L
Sbjct:  248 LDKYPAYHQGAFYLLSQPLVAHLHRGRAQLVAFANEDVTVGAWMMALNREMVALGSLSAAHLWDCTCA--TPTKWLRYDPNVFHHNCKALAQLQACAANL 345          
BLAST of mRNA_H-elongata_contig8497.16093.1 vs. uniprot
Match: D7FNA5_ECTSI (Hexosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA5_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 6.560e-14
Identity = 37/110 (33.64%), Postives = 62/110 (56.36%), Query Frame = 1
Query:   28 HRWFDTKYVQHTLGGLDCFPVYMQGAFYIISQPLIEHLFRRHEHLECFTNEDVTIGSWLLGVDRVMVEMYNLRNSHLWDCLCARTTITKKTRGKQQFFHNCKGMSQLKLC 357
            H+ +D +++  T G +DC P+Y QGAFYI+   ++ +L R  + L   + ED  +G WLLGVD+VM+++        + C C    + +K   K  F+H CK   ++ +C
Sbjct:  142 HKLYDPEFLAATGGTIDCHPMYHQGAFYILGVDIVNYLNRSRDMLTVMSVEDAMMGLWLLGVDKVMLDI-----GGSFYCKCFTHPVPQK---KMSFYHFCKTDEKMDVC 243          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8497.16093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KLW3_9PHAE3.290e-8284.62Hexosyltransferase n=1 Tax=Ectocarpus sp. CCAP 131... [more]
D8LT07_ECTSI2.420e-7884.62Beta-1,3-n-acetylglucosaminyltransferase, putative... [more]
A0A835YNB7_9STRA9.900e-4252.46Hexosyltransferase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A835YTA1_9STRA8.190e-3748.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G6P0_ECTSI1.660e-3653.85Hexosyltransferase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
D7FQB9_ECTSI5.910e-3349.15Hexosyltransferase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A835YWI3_9STRA5.910e-3343.31Hexosyltransferase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A6H5JHW0_9PHAE6.580e-3349.15Hexosyltransferase n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A835Z4X8_9STRA4.940e-2449.00Hexosyltransferase n=1 Tax=Tribonema minus TaxID=3... [more]
D7FNA5_ECTSI6.560e-1433.64Hexosyltransferase n=1 Tax=Ectocarpus siliculosus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8497contigH-elongata_contig8497:425..1576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.4
Seed ortholog evalue1.5e-62
Seed eggNOG ortholog2880.D8LT07
KEGG koko:K00734
KEGG ReactionR05927
KEGG Pathwayko00532,ko00534,ko01100,map00532,map00534,map01100
KEGG ModuleM00057
EggNOG free text desc.galactosyltransferase activity
EggNOG OGsKOG2288@1,KOG2288@2759
EC2.4.1.134
COG Functional cat.M
CAZyGT31
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlycosyl transferase, family 31
Ec32 orthologEc-08_004370.1
Exons3
Model size393
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8497.16093.1prot_H-elongata_contig8497.16093.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8497 437..1576 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931253.1770816-UTR-H-elongata_contig8497:424..4361622931253.1770816-UTR-H-elongata_contig8497:424..436Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8497 425..436 +
1691679760.9308088-UTR-H-elongata_contig8497:424..4361691679760.9308088-UTR-H-elongata_contig8497:424..436Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8497 425..436 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931253.1983368-CDS-H-elongata_contig8497:436..5231622931253.1983368-CDS-H-elongata_contig8497:436..523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8497 437..523 +
1691679760.944523-CDS-H-elongata_contig8497:436..5231691679760.944523-CDS-H-elongata_contig8497:436..523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8497 437..523 +
1622931253.2142797-CDS-H-elongata_contig8497:870..9811622931253.2142797-CDS-H-elongata_contig8497:870..981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8497 871..981 +
1691679760.9530025-CDS-H-elongata_contig8497:870..9811691679760.9530025-CDS-H-elongata_contig8497:870..981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8497 871..981 +
1622931253.2265933-CDS-H-elongata_contig8497:1393..15761622931253.2265933-CDS-H-elongata_contig8497:1393..1576Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8497 1394..1576 +
1691679760.9611597-CDS-H-elongata_contig8497:1393..15761691679760.9611597-CDS-H-elongata_contig8497:1393..1576Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8497 1394..1576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8497.16093.1

>prot_H-elongata_contig8497.16093.1 ID=prot_H-elongata_contig8497.16093.1|Name=mRNA_H-elongata_contig8497.16093.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
MKDSNHRWFDTKYVQHTLGGLDCFPVYMQGAFYIISQPLIEHLFRRHEHL
ECFTNEDVTIGSWLLGVDRVMVEMYNLRNSHLWDCLCARTTITKKTRGKQ
QFFHNCKGMSQLKLCGTRLLRPGIGC*
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mRNA from alignment at H-elongata_contig8497:425..1576+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8497.16093.1 ID=mRNA_H-elongata_contig8497.16093.1|Name=mRNA_H-elongata_contig8497.16093.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1152bp|location=Sequence derived from alignment at H-elongata_contig8497:425..1576+ (Himanthalia elongata Himel1 dioecious)
AACGGGCGCGTGATGAAGGACTCGAATCATCGATGGTTCGACACCAAGTA CGTGCAGCACACCCTGGGCGGTCTCGACTGTTTTCCAGTGTACATGCAGG TGAAATGCTTGAGCGACGGCGGCTGCGGCGGTGTGTTAACAGCCCCGTTG TGATTGTATTTGTTTTACCGATGTTTGTCTTCTCGACCCCTCACGGACTA TCCGCCGATCATGTGAGCTGTTTATGCCATATCCCATACTTTCTCACCCC CCCCCCCCGTTCTACCCAACTCCATTATCCTGGTCGAATGTTTTTGCGAT ATGTATCGCACTTTTCTCCATCGCCGTTGAGGTACGCTATGCACCAGCTC TGTCTTGCGTCATCTCCCGCGGTAAAGTTTCGGTTTCGGGGAGATGGGGC CTTATCATCGCTGCTGGTGTGCGTTGCAACCTGCGTTCTCCCGCAGGGAG CGTTCTACATTATTTCCCAGCCGCTGATCGAGCACCTGTTCCGCCGACAC GAGCATCTGGAGTGCTTTACCAACGAAGACGTTACGATTGGATCTTGGTT ACTGGGGGTGAGCACACGCGGGATGTACTGCATATTTTGAAAGGGAGAGA AACAGCAAGAAATCAGCCCACCATTCAGACCTCTCGCTCGAGCCTTCCGT CAAGCCGATGTCGAAATCAATTTTCAAGTGGTTTCATTTTTTTTCTGCCG CCGTGGGATGTTTTTCGCTTGACGCCACGTAGGAAATGGAAAATCATCAT TCTGATATATATAGGGCATGCCGACAGCCTTTTTTTGTCTGAGGATAACC GTACAGTACAATATGATACAGTATCCGAAACCGGACACACTGATTGGTCA AGTCTTGGGGAGGCGTTTGTGCTTGGCGGGGGGGGGCTTTCGCGGCGTGC TTTTTCTCCCTTCTCCCACTCTGCATCCCTCTTTAATCTTACTACTATTT TTCATTTCAAAATATGAAGGTGGATCGAGTGATGGTGGAAATGTACAATC TGCGCAACTCGCACTTGTGGGACTGCCTGTGCGCTCGCACCACGATCACG AAAAAAACGCGAGGAAAGCAGCAGTTTTTTCACAACTGCAAGGGTATGTC GCAACTCAAGCTCTGCGGCACGCGACTGCTCCGGCCGGGTATTGGGTGCT GA
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Coding sequence (CDS) from alignment at H-elongata_contig8497:425..1576+

>mRNA_H-elongata_contig8497.16093.1 ID=mRNA_H-elongata_contig8497.16093.1|Name=mRNA_H-elongata_contig8497.16093.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig8497:425..1576+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGACTCGAATCATCGATGGTTCGACACCAAGTACGTGCAGCACAC
CCTGGGCGGTCTCGACTGTTTTCCAGTGTACATGCAGATGAAGGACTCGA
ATCATCGATGGTTCGACACCAAGTACGTGCAGCACACCCTGGGCGGTCTC
GACTGTTTTCCAGTGTACATGCAGGGAGCGTTCTACATTATTTCCCAGCC
GCTGATCGAGCACCTGTTCCGCCGACACGAGCATCTGGAGTGCTTTACCA
ACGAAGACGTTACGATTGGATCTTGGTTACTGGGGGGAGCGTTCTACATT
ATTTCCCAGCCGCTGATCGAGCACCTGTTCCGCCGACACGAGCATCTGGA
GTGCTTTACCAACGAAGACGTTACGATTGGATCTTGGTTACTGGGGGTGG
ATCGAGTGATGGTGGAAATGTACAATCTGCGCAACTCGCACTTGTGGGAC
TGCCTGTGCGCTCGCACCACGATCACGAAAAAAACGCGAGGAAAGCAGCA
GTTTTTTCACAACTGCAAGGGTATGTCGCAACTCAAGCTCTGCGGCACGC
GACTGCTCCGGCCGGGTATTGGGTGCTGAGTGGATCGAGTGATGGTGGAA
ATGTACAATCTGCGCAACTCGCACTTGTGGGACTGCCTGTGCGCTCGCAC
CACGATCACGAAAAAAACGCGAGGAAAGCAGCAGTTTTTTCACAACTGCA
AGGGTATGTCGCAACTCAAGCTCTGCGGCACGCGACTGCTCCGGCCGGGT
ATTGGGTGCTGA
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