mRNA_H-elongata_contig8497.16093.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig8497.16093.1 vs. uniprot
Match: A0A6H5KLW3_9PHAE (Hexosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLW3_9PHAE) HSP 1 Score: 252 bits (643), Expect = 3.290e-82 Identity = 110/130 (84.62%), Postives = 120/130 (92.31%), Query Frame = 1
Query: 1 NGRVMKDSNHRWFDTKYVQHTLGGLDCFPVYMQGAFYIISQPLIEHLFRRHEHLECFTNEDVTIGSWLLGVDRVMVEMYNLRNSHLWDCLCARTTITKKTRGKQQFFHNCKGMSQLKLCGTRLLRPGIGC 390
NGRVMK+ +HRWFD+KYVQHTLGGLDCFP YMQGAFYI++QPL+EHL+R HEHLECFTNEDVTIGSWL+GVDR MVEMYNL SHLWDCLCART IT KTR KQ FFHNCKG+SQLKLCGTRLLRPG+GC
Sbjct: 172 NGRVMKNPDHRWFDSKYVQHTLGGLDCFPAYMQGAFYILAQPLVEHLYRGHEHLECFTNEDVTIGSWLMGVDREMVEMYNLHTSHLWDCLCARTQITVKTRRKQMFFHNCKGLSQLKLCGTRLLRPGVGC 301
BLAST of mRNA_H-elongata_contig8497.16093.1 vs. uniprot
Match: D8LT07_ECTSI (Beta-1,3-n-acetylglucosaminyltransferase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT07_ECTSI) HSP 1 Score: 252 bits (643), Expect = 2.420e-78 Identity = 110/130 (84.62%), Postives = 120/130 (92.31%), Query Frame = 1
Query: 1 NGRVMKDSNHRWFDTKYVQHTLGGLDCFPVYMQGAFYIISQPLIEHLFRRHEHLECFTNEDVTIGSWLLGVDRVMVEMYNLRNSHLWDCLCARTTITKKTRGKQQFFHNCKGMSQLKLCGTRLLRPGIGC 390
NGRVMK+ +HRWFD+KYVQHTLGGLDCFP YMQGAFYI++QPL+EHL+R HEHLECFTNEDVTIGSWL+GVDR MVEMYNLR SHLWDCLCART IT KTR K FFHNCKG+SQLKLCGTRLLRPG+GC
Sbjct: 508 NGRVMKNPDHRWFDSKYVQHTLGGLDCFPAYMQGAFYILAQPLVEHLYRGHEHLECFTNEDVTIGSWLMGVDREMVEMYNLRTSHLWDCLCARTQITVKTRKKHMFFHNCKGLSQLKLCGTRLLRPGVGC 637
BLAST of mRNA_H-elongata_contig8497.16093.1 vs. uniprot
Match: A0A835YNB7_9STRA (Hexosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNB7_9STRA) HSP 1 Score: 146 bits (369), Expect = 9.900e-42 Identity = 64/122 (52.46%), Postives = 85/122 (69.67%), Query Frame = 1
Query: 4 GRVMKDSNHRWFDTKYVQHTLGGLDCFPVYMQGAFYIISQPLIEHLFRRHEHLECFTNEDVTIGSWLLGVDRVMVEMYNLRNSHLWDCLCARTTITKKTRGKQQFFHNCKGMSQLKLCGTRL 369
GRV+KD NH+W D K+V HTLGGLDC+P Y QGAFY++S+PL+++L + L FTNEDVT+GSWL+GVDR M+ ++ + LW+C CA+ T K FFHNCK + QL+ C L
Sbjct: 99 GRVIKDPNHKWHDAKFVSHTLGGLDCYPAYHQGAFYLLSEPLVQYLHQGRSKLLTFTNEDVTMGSWLMGVDREMIAFNSISEARLWECTCAKYTKWLKY-DTNAFFHNCKSLDQLQKCAEFL 219
BLAST of mRNA_H-elongata_contig8497.16093.1 vs. uniprot
Match: A0A835YTA1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTA1_9STRA) HSP 1 Score: 141 bits (355), Expect = 8.190e-37 Identity = 62/128 (48.44%), Postives = 86/128 (67.19%), Query Frame = 1
Query: 4 GRVMKDSNHRWFDTKYVQHTLGGLDCFPVYMQGAFYIISQPLIEHLFRRHEHLECFTNEDVTIGSWLLGVDRVMVEMYNLRNSHLWDCLCARTTITKKTRGKQQFFHNCKGMSQLKLCGTRLLRPGIG 387
GRV+ D +RW+D K+V HT+GGL C+PVYMQGAFY+++QPL+E L H F NEDVT+GSWLLGVDR +V + ++ + LW C C+ T+ + R FFH+CK + +L+ C R R +G
Sbjct: 448 GRVIMDKTNRWYDPKFVTHTMGGLPCYPVYMQGAFYVLAQPLVEFLNLGRPHWVTFQNEDVTVGSWLLGVDRDIVTIDDITTARLWGCQCSLDTMPQWARKSSVFFHDCKALEKLRRCDERF-RAQVG 574
BLAST of mRNA_H-elongata_contig8497.16093.1 vs. uniprot
Match: D7G6P0_ECTSI (Hexosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6P0_ECTSI) HSP 1 Score: 139 bits (349), Expect = 1.660e-36 Identity = 56/104 (53.85%), Postives = 77/104 (74.04%), Query Frame = 1
Query: 4 GRVMKDSNHRWFDTKYVQHTLGGLDCFPVYMQGAFYIISQPLIEHLFRRHEHLECFTNEDVTIGSWLLGVDRVMVEMYNLRNSHLWDCLCARTTITKKTRGKQQ 315
GRV+KD +W+D K+V HTL GLDC+PVYMQGAFY+++QPL+EHL+R EH + F NEDVT+GSWLLGVDR + +++ +S LW+C+C + + K Q
Sbjct: 332 GRVIKDHKDKWYDQKFVHHTLAGLDCYPVYMQGAFYVLAQPLVEHLYRGREHYDTFINEDVTVGSWLLGVDRALGTIHDFESSRLWNCVCGSNFVLRPAVRKDQ 435
BLAST of mRNA_H-elongata_contig8497.16093.1 vs. uniprot
Match: D7FQB9_ECTSI (Hexosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB9_ECTSI) HSP 1 Score: 129 bits (324), Expect = 5.910e-33 Identity = 58/118 (49.15%), Postives = 77/118 (65.25%), Query Frame = 1
Query: 4 GRVMKDSNHRWFDTKYVQHTLGGLDCFPVYMQGAFYIISQPLIEHLFRRHEHLECFTNEDVTIGSWLLGVDRVMVEMYNLRNSHLWDCLCARTTITKKTRGKQQFFHNCKGMSQLKLC 357
G+V+ D + +W+D KY+ HT+ GLDC+PVYMQGAFYI+S PL+E L + L F NEDVTIG WL GVDR + + +LR++ +W+C C R FFH CKGM L+ C
Sbjct: 331 GKVIVDMDEKWYDGKYLNHTMNGLDCYPVYMQGAFYILSYPLVEFLNQGSSKLLTFDNEDVTIGLWLHGVDRAIFPLNDLRDARMWECSCKRPNFNPGGDANV-FFHGCKGMDDLRGC 447
BLAST of mRNA_H-elongata_contig8497.16093.1 vs. uniprot
Match: A0A835YWI3_9STRA (Hexosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWI3_9STRA) HSP 1 Score: 128 bits (321), Expect = 5.910e-33 Identity = 55/127 (43.31%), Postives = 79/127 (62.20%), Query Frame = 1
Query: 4 GRVMKDSNHRWFDTKYVQHTLGGLDCFPVYMQGAFYIISQPLIEHLFRRHEHLECFTNEDVTIGSWLLGVDRVMVEMYNLRNSHLWDCLCARTTITK-----KTRGKQQFFHNCKGMSQLKLCGTRL 369
GRV D H+W+D +YV+HT+G ++C+P Y QGA YI+S+ L+E L++ +HL F NEDVT+G+WL+GVDR +V + +L + LW+C CA K FFHNCK Q+ C +
Sbjct: 257 GRVFSDPTHKWYDERYVEHTMGSMECYPPYHQGAGYILSRSLVEFLYKGRDHLLTFINEDVTMGTWLMGVDRSVVSLRDLDGARLWECTCASYRFAHDAAFHKNHQNNAFFHNCKQAWQMLKCAIAM 383
BLAST of mRNA_H-elongata_contig8497.16093.1 vs. uniprot
Match: A0A6H5JHW0_9PHAE (Hexosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHW0_9PHAE) HSP 1 Score: 128 bits (322), Expect = 6.580e-33 Identity = 58/118 (49.15%), Postives = 77/118 (65.25%), Query Frame = 1
Query: 4 GRVMKDSNHRWFDTKYVQHTLGGLDCFPVYMQGAFYIISQPLIEHLFRRHEHLECFTNEDVTIGSWLLGVDRVMVEMYNLRNSHLWDCLCARTTITKKTRGKQQFFHNCKGMSQLKLC 357
G+V+ D + +W+D KY+ HT+ GLDC+PVYMQGAFYI+S PL+E L + L F NEDVTIG WL GVDR + + +LR++ +W+C C R FFHNCK M L+ C
Sbjct: 291 GKVIVDMDDKWYDGKYLNHTMNGLDCYPVYMQGAFYILSYPLVEFLNQGSSKLLTFDNEDVTIGLWLHGVDRAIFPLNDLRDARVWECSCKRPNFNPGGDANV-FFHNCKSMDDLRGC 407
BLAST of mRNA_H-elongata_contig8497.16093.1 vs. uniprot
Match: A0A835Z4X8_9STRA (Hexosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4X8_9STRA) HSP 1 Score: 103 bits (258), Expect = 4.940e-24 Identity = 49/100 (49.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query: 73 LDCFPVYMQGAFYIISQPLIEHLFRRHEHLECFTNEDVTIGSWLLGVDRVMVEMYNLRNSHLWDCLCARTTITKKTR-GKQQFFHNCKGMSQLKLCGTRL 369
LD +P Y QGAFY++SQPL+ HL R L F NEDVT+G+W++ ++R MV + +L +HLWDC CA T TK R F HNCK ++QL+ C L
Sbjct: 248 LDKYPAYHQGAFYLLSQPLVAHLHRGRAQLVAFANEDVTVGAWMMALNREMVALGSLSAAHLWDCTCA--TPTKWLRYDPNVFHHNCKALAQLQACAANL 345
BLAST of mRNA_H-elongata_contig8497.16093.1 vs. uniprot
Match: D7FNA5_ECTSI (Hexosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA5_ECTSI) HSP 1 Score: 75.5 bits (184), Expect = 6.560e-14 Identity = 37/110 (33.64%), Postives = 62/110 (56.36%), Query Frame = 1
Query: 28 HRWFDTKYVQHTLGGLDCFPVYMQGAFYIISQPLIEHLFRRHEHLECFTNEDVTIGSWLLGVDRVMVEMYNLRNSHLWDCLCARTTITKKTRGKQQFFHNCKGMSQLKLC 357
H+ +D +++ T G +DC P+Y QGAFYI+ ++ +L R + L + ED +G WLLGVD+VM+++ + C C + +K K F+H CK ++ +C
Sbjct: 142 HKLYDPEFLAATGGTIDCHPMYHQGAFYILGVDIVNYLNRSRDMLTVMSVEDAMMGLWLLGVDKVMLDI-----GGSFYCKCFTHPVPQK---KMSFYHFCKTDEKMDVC 243 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8497.16093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8497.16093.1 >prot_H-elongata_contig8497.16093.1 ID=prot_H-elongata_contig8497.16093.1|Name=mRNA_H-elongata_contig8497.16093.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp MKDSNHRWFDTKYVQHTLGGLDCFPVYMQGAFYIISQPLIEHLFRRHEHLback to top mRNA from alignment at H-elongata_contig8497:425..1576+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8497.16093.1 ID=mRNA_H-elongata_contig8497.16093.1|Name=mRNA_H-elongata_contig8497.16093.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1152bp|location=Sequence derived from alignment at H-elongata_contig8497:425..1576+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8497:425..1576+ >mRNA_H-elongata_contig8497.16093.1 ID=mRNA_H-elongata_contig8497.16093.1|Name=mRNA_H-elongata_contig8497.16093.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig8497:425..1576+ (Himanthalia elongata Himel1 dioecious)back to top |