prot_H-elongata_contig84947.16091.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig84947.16091.1
Unique Name	prot_H-elongata_contig84947.16091.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	123

Homology

[Close]

BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 7.000e-20
Identity = 50/121 (41.32%), Postives = 75/121 (61.98%), Query Frame = 0

Query:    6 VSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFKMVRFLKHKRDTTNALRDIINDCFAPEGLK--ISVIHTDGGGEWHG-QFLSFLGEIGIKPESTPPYTPQYIGVVER 123
            +++ T++R+D++ GR+F+DL G   V S+GG  + M+  DDFTR   + FLKHK D   A R  +    A +G+   + ++ +D GGE+ G +F S   E+ IK E TP Y+PQY GV ER
Sbjct:  712 IARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 831

[Close]

BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 7.020e-20
Identity = 50/121 (41.32%), Postives = 75/121 (61.98%), Query Frame = 0

Query:    6 VSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFKMVRFLKHKRDTTNALRDIINDCFAPEGLK--ISVIHTDGGGEWHG-QFLSFLGEIGIKPESTPPYTPQYIGVVER 123
            +++ T++R+D++ GR+F+DL G   V S+GG  + M+  DDFTR   + FLKHK D   A R  +    A +G+   + ++ +D GGE+ G +F S   E+ IK E TP Y+PQY GV ER
Sbjct:  419 IARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 538

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BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Match: A0A6H5KKD5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD5_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.240e-19
Identity = 50/121 (41.32%), Postives = 73/121 (60.33%), Query Frame = 0

Query:    6 VSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFKMVRFLKHKRDTTNALRDIINDCFAPEGLK--ISVIHTDGGGEW-HGQFLSFLGEIGIKPESTPPYTPQYIGVVER 123
            ++  T+ R+D++ GR+F+DL G   V S+GGN + M+  DDFTR   + FLK K D  +A R  +    A +G+   + ++ +D GGE   G+F S   E+ IK E TP Y+PQY GV ER
Sbjct:   23 IAHETKCRSDKKLGRVFVDLGGRKDVASVGGNHYPMIVKDDFTRRTWIYFLKSKSDAASAFRSFLASVLA-DGIPSLVEIVRSDNGGEVVRGEFASVCNELLIKQEFTPAYSPQYNGVAER 142

[Close]

BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.520e-18
Identity = 49/121 (40.50%), Postives = 73/121 (60.33%), Query Frame = 0

Query:    6 VSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFKMVRFLKHKRDTTNALRDIINDCFAPEGLK--ISVIHTDGGGEWHG-QFLSFLGEIGIKPESTPPYTPQYIGVVER 123
            ++  T+ R+D++ GR+F+DL G   V S+GG  + M+  DDFTR   + FLK K D  +A R  +    A +G+   + ++ +D GGE+ G +F S   E+ IK E TP Y+PQY GV ER
Sbjct:  618 IAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRA-DGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 737

[Close]

BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 7.360e-18
Identity = 48/124 (38.71%), Postives = 73/124 (58.87%), Query Frame = 0

Query:    3 RYAVSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFKMVRFLKHKRDTTNALRDIINDCFAPEGLK--ISVIHTDGGGEWHG-QFLSFLGEIGIKPESTPPYTPQYIGVVER 123
            R  +   T+ R+D++ GR+F+DL G   + S+GG  + M+  DDFTR   + FL++K D  +A R  +    A  G+   + ++ +D GGE+ G +F S   E+ IK E TP Y+PQY GV ER
Sbjct:  230 RKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAER 352

[Close]

BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.340e-17
Identity = 48/124 (38.71%), Postives = 73/124 (58.87%), Query Frame = 0

Query:    3 RYAVSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFKMVRFLKHKRDTTNALRDIINDCFAPEGLK--ISVIHTDGGGEWHG-QFLSFLGEIGIKPESTPPYTPQYIGVVER 123
            R  + + T+ R+D++ GR+F+DL G     S+GG  + M+  DDFTR   + FL++K D  +A R  +    A  G+   + ++ +D GGE+ G +F S   E+ IK E TP Y+PQY GV ER
Sbjct:  175 RKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 297

[Close]

BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.730e-17
Identity = 49/125 (39.20%), Postives = 73/125 (58.40%), Query Frame = 0

Query:    3 RYAVSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFKMVRFLKHKRDTTNALRDIINDCFA---PEGLKISVIHTDGGGEWHG-QFLSFLGEIGIKPESTPPYTPQYIGVVER 123
            R  + + T+ R+D++ GR+F+DL G   + S+GG  + M+  DDFTR   + FLK++ D   A R  +    A   P  ++I  + +D GGE+ G +F S   E+ IK E TP Y+PQY GV ER
Sbjct:  297 RKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 419

[Close]

BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Match: A0A4U2KMG9_9BACT (Transposase (Fragment) n=1 Tax=Puteibacter caeruleilacunae TaxID=2528631 RepID=A0A4U2KMG9_9BACT)

HSP 1 Score: 82.4 bits (202), Expect = 8.210e-17
Identity = 46/111 (41.44%), Postives = 64/111 (57.66%), Query Frame = 0

Query:   14 TDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFKMVRFLKHKRDTTNALRDIINDCFAPEGLKISVIHTDGGGEW-HGQFLSFLGEIGIKPESTPPYTPQYIGVVER 123
            TDR    L +DL GP    S+GG+++ ++ +DD++RF  V FL+ K  T   L+  +       GL+I  I +D G E+ + Q   FL E GIK E + PYTPQ  GVVER
Sbjct:    3 TDRPLELLHMDLFGPIAYISIGGSKYCLVIVDDYSRFTWVFFLQEKSXTQETLKXFLRXAQNEFGLRIKKIRSDNGTEFKNSQIEGFLEEEGIKHEFSSPYTPQQNGVVER 113

[Close]

BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 8.870e-17
Identity = 47/124 (37.90%), Postives = 75/124 (60.48%), Query Frame = 0

Query:    3 RYAVSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFKMVRFLKHKRDTTNALRDIINDCFAPEGLK--ISVIHTDGGGEWHG-QFLSFLGEIGIKPESTPPYTPQYIGVVER 123
            R A++  T N +D++ GR+F++L G   V S+GG  + M+  DDFTR   + FL+ K D  +A R  + +  A +G+   I ++ +D GGE+ G +F S   E+ IK E TP ++P++ GV ER
Sbjct:  436 RKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRA-DGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAER 558

[Close]

BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Match: A0A6H5KVT7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVT7_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 2.260e-16
Identity = 46/124 (37.10%), Postives = 74/124 (59.68%), Query Frame = 0

Query:    3 RYAVSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRFKMVRFLKHKRDTTNALRDIINDCFAPEGLK--ISVIHTDGGGEWHG-QFLSFLGEIGIKPESTPPYTPQYIGVVER 123
            R A++  T N +D++ GR+F+DL G   V S+GG  + M+  DDFTR   + FL+ K D  +  R  + +  A +G+   I ++ +D GG++ G +F S   E+ IK E TP ++P++ GV ER
Sbjct:  264 RKAIAHVTTNGSDKKLGRVFVDLGGKKGVASIGGKHYPMILKDDFTRRARMYFLRSKSDAGSVFRSFLANVRA-DGIPSLIEIVRSDNGGKFFGGEFASVCNELLIKQEFTPAHSPEFNGVAER 386

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot

BLAST of mRNA_H-elongata_contig84947.16091.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JBA7_9PHAE	7.000e-20	41.32	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZH7_9PHAE	7.020e-20	41.32	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KKD5_9PHAE	1.240e-19	41.32	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K2M6_9PHAE	1.520e-18	40.50	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JRL9_9PHAE	7.360e-18	38.71	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5L3Y0_9PHAE	1.340e-17	38.71	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JV76_9PHAE	1.730e-17	39.20	Integrase catalytic domain-containing protein (Fra...	[more]
A0A4U2KMG9_9BACT	8.210e-17	41.44	Transposase (Fragment) n=1 Tax=Puteibacter caerule...	[more]
A0A6H5JH25_9PHAE	8.870e-17	37.90	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KVT7_9PHAE	2.260e-16	37.10	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 8..123 e-value: 4.5E-16 score: 60.6
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 18..123 e-value: 2.3E-12 score: 47.1
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 13..123 score: 14.779
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 16..123
None	No IPR available	PANTHER	PTHR11439:SF250		coord: 16..123
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 14..123

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig84947	contig	H-elongata_contig84947:2086..2454 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig84947.16091.1	mRNA_H-elongata_contig84947.16091.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig84947 2062..2454 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig84947.16091.1 ID=prot_H-elongata_contig84947.16091.1|Name=mRNA_H-elongata_contig84947.16091.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp
MRRYAVSKSTENRTDRRAGRLFIDLSGPFHVTSLGGNRFVMLCIDDFTRF
KMVRFLKHKRDTTNALRDIINDCFAPEGLKISVIHTDGGGEWHGQFLSFL
GEIGIKPESTPPYTPQYIGVVER

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR001584	Integrase_cat-core
IPR039537	Retrotran_Ty1/copia-like
IPR012337	RNaseH-like_sf