mRNA_H-elongata_contig84894.16087.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84894.16087.1
Unique NamemRNA_H-elongata_contig84894.16087.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84894.16087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84894contigH-elongata_contig84894:972..1730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size456
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931252.6179361-CDS-H-elongata_contig84894:971..13731622931252.6179361-CDS-H-elongata_contig84894:971..1373Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84894 972..1373 -
1691679760.7136164-CDS-H-elongata_contig84894:971..13731691679760.7136164-CDS-H-elongata_contig84894:971..1373Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84894 972..1373 -
1622931252.6431806-CDS-H-elongata_contig84894:1676..17301622931252.6431806-CDS-H-elongata_contig84894:1676..1730Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84894 1677..1730 -
1691679760.7252047-CDS-H-elongata_contig84894:1676..17301691679760.7252047-CDS-H-elongata_contig84894:1676..1730Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84894 1677..1730 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84894.16087.1prot_H-elongata_contig84894.16087.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84894 972..1730 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84894.16087.1

>prot_H-elongata_contig84894.16087.1 ID=prot_H-elongata_contig84894.16087.1|Name=mRNA_H-elongata_contig84894.16087.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp
GHLHRSPLSKKVFDDAQTRRFPKKTPVNIPTGCITRWWSWHAMLVKALEH
KSSLVHTLEVANERPGVDIHLSNQDWANAERMVAMLGPFFEAVETLEADS
IGLPELPSIMTVLNAHIESETAAFDQAQLTTAGDIMLIDHADRWDDLPDV
VK
back to top

mRNA from alignment at H-elongata_contig84894:972..1730-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84894.16087.1 ID=mRNA_H-elongata_contig84894.16087.1|Name=mRNA_H-elongata_contig84894.16087.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=759bp|location=Sequence derived from alignment at H-elongata_contig84894:972..1730- (Himanthalia elongata Himel1 dioecious)
GGGCACCTACACAGGTCTCCGCTGTCGAAGAAAGTGTTCGATGATGCTCA
GACGGTGAGTGTGGTATTTTTTGCTCGGTCGTTTCGTCTCTAAAATTTGG
CATTTTTTGTCGCTGTTGACAATGGCGGAAGTTCGGCGGAACCCACTGCC
CACTGCATCGGTGGGTGGTGTGTAGTGTGTAGCACACGGGGTGAACACTC
TACTTGCACTAGCATCGACTGGTCTCAACGCATCAATTCTCTGTCCTGAG
AGACGTAGAGTTGTACGTGAAAGTTTGAAAAGTCTGCGGTATCTGAAGAC
CTCCCTCTTGCCCCCTCCCCTCTTCGCCCGATCCCCAACTGATTACTTCG
AATGCAGAGGAGGTTCCCCAAAAAGACACCGGTCAACATCCCAACAGGCT
GTATCACGCGGTGGTGGTCGTGGCACGCGATGCTTGTGAAGGCCCTGGAG
CACAAGAGCAGCCTTGTGCACACCCTCGAGGTGGCCAACGAACGCCCGGG
GGTGGACATTCACCTCTCCAACCAAGACTGGGCTAATGCGGAGCGGATGG
TGGCGATGCTTGGGCCGTTCTTTGAAGCAGTGGAGACCCTCGAGGCTGAC
AGCATTGGCCTGCCGGAGCTCCCCTCCATCATGACCGTTCTGAACGCCCA
CATCGAGTCCGAGACAGCGGCGTTCGACCAGGCCCAGCTCACCACGGCCG
GCGACATCATGCTTATCGACCATGCAGACCGCTGGGATGATCTCCCTGAC
GTTGTCAAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig84894:972..1730-

>mRNA_H-elongata_contig84894.16087.1 ID=mRNA_H-elongata_contig84894.16087.1|Name=mRNA_H-elongata_contig84894.16087.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at H-elongata_contig84894:972..1730- (Himanthalia elongata Himel1 dioecious)
GGGCACCTACACAGGTCTCCGCTGTCGAAGAAAGTGTTCGATGATGCTCA
GACGGGGCACCTACACAGGTCTCCGCTGTCGAAGAAAGTGTTCGATGATG
CTCAGACGAGGAGGTTCCCCAAAAAGACACCGGTCAACATCCCAACAGGC
TGTATCACGCGGTGGTGGTCGTGGCACGCGATGCTTGTGAAGGCCCTGGA
GCACAAGAGCAGCCTTGTGCACACCCTCGAGGTGGCCAACGAACGCCCGG
GGGTGGACATTCACCTCTCCAACCAAGACTGGGCTAATGCGGAGCGGATG
GTGGCGATGCTTGGGCCGTTCTTTGAAGCAGTGGAGACCCTCGAGGCTGA
CAGCATTGGCCTGCCGGAGCTCCCCTCCATCATGACCGTTCTGAACGCCC
ACATCGAGTCCGAGACAGCGGCGTTCGACCAGGCCCAGCTCACCACGGCC
GGCGACATCATGCTTATCGACCATGCAGACCGCTGGGATGATCTCCCTGA
CGTTGTCAAGAGGAGGTTCCCCAAAAAGACACCGGTCAACATCCCAACAG
GCTGTATCACGCGGTGGTGGTCGTGGCACGCGATGCTTGTGAAGGCCCTG
GAGCACAAGAGCAGCCTTGTGCACACCCTCGAGGTGGCCAACGAACGCCC
GGGGGTGGACATTCACCTCTCCAACCAAGACTGGGCTAATGCGGAGCGGA
TGGTGGCGATGCTTGGGCCGTTCTTTGAAGCAGTGGAGACCCTCGAGGCT
GACAGCATTGGCCTGCCGGAGCTCCCCTCCATCATGACCGTTCTGAACGC
CCACATCGAGTCCGAGACAGCGGCGTTCGACCAGGCCCAGCTCACCACGG
CCGGCGACATCATGCTTATCGACCATGCAGACCGCTGGGATGATCTCCCT
GACGTTGTCAAG
back to top