mRNA_H-elongata_contig84884.16086.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84884.16086.1
Unique NamemRNA_H-elongata_contig84884.16086.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig84884.16086.1 vs. uniprot
Match: A0A6H5JWV2_9PHAE (Amino_oxidase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWV2_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.520e-18
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 AVTHFFPGAFQHLPCVQPSSEIPEIFMCGDWVNRGGHRSWSQ 126
            AV+HFFPGAFQHLP +QPS+E+P +FMCGDWV RGGHRSWSQ
Sbjct:  204 AVSHFFPGAFQHLPRIQPSAELPLVFMCGDWVCRGGHRSWSQ 245
[Close]
BLAST of mRNA_H-elongata_contig84884.16086.1 vs. uniprot
Match: D7FYP2_ECTSI (Amine oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYP2_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 4.400e-18
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 AVTHFFPGAFQHLPCVQPSSEIPEIFMCGDWVNRGGHRSWSQ 126
            AV+HFFPGAFQHLP +QPS+++P +FMCGDWV RGGHRSWSQ
Sbjct:  520 AVSHFFPGAFQHLPRIQPSADLPSVFMCGDWVCRGGHRSWSQ 561
[Close]
BLAST of mRNA_H-elongata_contig84884.16086.1 vs. uniprot
Match: A0A7S2KM42_BIGNA (Hypothetical protein n=1 Tax=Bigelowiella natans TaxID=227086 RepID=A0A7S2KM42_BIGNA)

HSP 1 Score: 49.7 bits (117), Expect = 7.130e-6
Identity = 23/42 (54.76%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 AVTHFFPGAFQHLPCVQPSSEIPEIFMCGDWVNRGGHRSWSQ 126
            AV+HF PG F++LP ++ +S I      GD+V+RGGHRSWSQ
Sbjct:   76 AVSHFAPGTFKNLPKIRATS-IDNWSNAGDFVDRGGHRSWSQ 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84884.16086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JWV2_9PHAE1.520e-1880.95Amino_oxidase domain-containing protein n=1 Tax=Ec... [more]
D7FYP2_ECTSI4.400e-1878.57Amine oxidase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A7S2KM42_BIGNA7.130e-654.76Hypothetical protein n=1 Tax=Bigelowiella natans T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84884contigH-elongata_contig84884:2338..2463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue6.5e-15
Seed eggNOG ortholog2880.D7FYP2
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG1231@1,KOG0029@2759
Ec32 ortholog descriptionAmine oxidase
Ec32 orthologEc-17_000200.2
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size126
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931252.5130076-CDS-H-elongata_contig84884:2337..24631622931252.5130076-CDS-H-elongata_contig84884:2337..2463Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84884 2338..2463 +
1691679760.6983378-CDS-H-elongata_contig84884:2337..24631691679760.6983378-CDS-H-elongata_contig84884:2337..2463Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84884 2338..2463 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84884.16086.1prot_H-elongata_contig84884.16086.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84884 2338..2463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84884.16086.1

>prot_H-elongata_contig84884.16086.1 ID=prot_H-elongata_contig84884.16086.1|Name=mRNA_H-elongata_contig84884.16086.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
AVTHFFPGAFQHLPCVQPSSEIPEIFMCGDWVNRGGHRSWSQ
back to top

mRNA from alignment at H-elongata_contig84884:2338..2463+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84884.16086.1 ID=mRNA_H-elongata_contig84884.16086.1|Name=mRNA_H-elongata_contig84884.16086.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=126bp|location=Sequence derived from alignment at H-elongata_contig84884:2338..2463+ (Himanthalia elongata Himel1 dioecious)
GCCGTGACTCACTTCTTCCCGGGGGCGTTCCAGCACCTACCATGCGTTCA
ACCATCTTCGGAGATCCCGGAGATCTTCATGTGCGGTGATTGGGTCAACC
GAGGAGGACATCGGTCGTGGTCGCAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig84884:2338..2463+

>mRNA_H-elongata_contig84884.16086.1 ID=mRNA_H-elongata_contig84884.16086.1|Name=mRNA_H-elongata_contig84884.16086.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig84884:2338..2463+ (Himanthalia elongata Himel1 dioecious)
GCCGTGACTCACTTCTTCCCGGGGGCGTTCCAGCACCTACCATGCGTTCA
ACCATCTTCGGAGATCCCGGAGATCTTCATGTGCGGTGATTGGGTCAACC
GAGGAGGACATCGGTCGTGGTCGCAGGCCGTGACTCACTTCTTCCCGGGG
GCGTTCCAGCACCTACCATGCGTTCAACCATCTTCGGAGATCCCGGAGAT
CTTCATGTGCGGTGATTGGGTCAACCGAGGAGGACATCGGTCGTGGTCGC
AG
back to top