mRNA_H-elongata_contig8481.16079.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig8481.16079.1 vs. uniprot
Match: D7FVJ9_ECTSI (Similar to chemokine (C-C motif) receptor 6a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ9_ECTSI) HSP 1 Score: 133 bits (334), Expect = 4.400e-37 Identity = 65/95 (68.42%), Postives = 77/95 (81.05%), Query Frame = 1
Query: 4 GTIDDLKLALLENLENRGVLCKLKAQVRAEIFHTLEGPQNDVISPSLSNDNLLINELVRDYLDYSGFINAQSVFMVESGQPTNTGLKREFIKEQV 288
GTIDDLK AL+ENLE+RGVL KL+A+VRAE+FHTLEGPQ V+ LSNDNLLINELVRDYL Y+G+ NA VFM ESGQP L R FI++++
Sbjct: 20 GTIDDLKQALVENLEHRGVLGKLRAKVRAEVFHTLEGPQERVLPTPLSNDNLLINELVRDYLSYNGYANALGVFMAESGQPIERSLDRGFIRDEL 114
BLAST of mRNA_H-elongata_contig8481.16079.1 vs. uniprot
Match: A0A6H5KW76_9PHAE (LisH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW76_9PHAE) HSP 1 Score: 131 bits (330), Expect = 1.920e-36 Identity = 64/95 (67.37%), Postives = 77/95 (81.05%), Query Frame = 1
Query: 4 GTIDDLKLALLENLENRGVLCKLKAQVRAEIFHTLEGPQNDVISPSLSNDNLLINELVRDYLDYSGFINAQSVFMVESGQPTNTGLKREFIKEQV 288
GTIDDLK AL+ENLE+RGVL KL+A+VRAE+FHTLEGPQ V+ LSN+NLLINELVRDYL Y+G+ NA VFM ESGQP L R FI++++
Sbjct: 20 GTIDDLKQALVENLEHRGVLGKLRAKVRAEVFHTLEGPQEGVLPTPLSNENLLINELVRDYLSYNGYSNALGVFMAESGQPIERSLDRGFIRDEL 114
BLAST of mRNA_H-elongata_contig8481.16079.1 vs. uniprot
Match: A0A0G4ISE5_PLABS (LisH domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4ISE5_PLABS) HSP 1 Score: 100 bits (249), Expect = 2.790e-25 Identity = 48/101 (47.52%), Postives = 72/101 (71.29%), Query Frame = 1
Query: 1 VGTIDDLKLALLENLENRGVLCKLKAQVRAEIFHTLEGPQNDVISPSLSNDNLLINELVRDYLDYSGFINAQSVFMVESGQPTNTGLKREFIKEQVRHRCQ 303
+ T+DDLK L E LE RGVL +L+A++RAEIF+ LE + D P LSN+N+++NEL+R+YL+++G+ N SVFM E+GQPT + F+++ + R Q
Sbjct: 1 MATLDDLKAVLRETLETRGVLSQLQARIRAEIFNALEDQEPD--RPRLSNENMIVNELIREYLEFNGYQNTLSVFMPETGQPTPAPFEAPFLEQHLHIRPQ 99
BLAST of mRNA_H-elongata_contig8481.16079.1 vs. uniprot
Match: A0A2D4BX57_PYTIN (LisH domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BX57_PYTIN) HSP 1 Score: 97.8 bits (242), Expect = 3.500e-24 Identity = 47/95 (49.47%), Postives = 69/95 (72.63%), Query Frame = 1
Query: 7 TIDDLKLALLENLENRGVLCKLKAQVRAEIFHTLEGPQNDVISPSLSNDNLLINELVRDYLDYSGFINAQSVFMVESGQPTNTGLKREFIKEQVR 291
++DDLK L + LE RG L ++KA++RAEIF L+ + V P LSN+NL+INEL+R+YL+Y+G+ +A SVF+ ESGQP REF+ +++R
Sbjct: 15 SLDDLKAVLKDTLEARGSLGQIKARIRAEIFSALD--DHSVPKPKLSNENLIINELIREYLEYNGYRHAHSVFLAESGQPLKAPFHREFLAKELR 107
BLAST of mRNA_H-elongata_contig8481.16079.1 vs. uniprot
Match: A0A835YQT6_9STRA (LisH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQT6_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 9.470e-23 Identity = 49/97 (50.52%), Postives = 71/97 (73.20%), Query Frame = 1
Query: 4 GTIDDLKLALLENLENRGVLCKLKAQVRAEIFHTLEGPQ--NDVISPSLSNDNLLINELVRDYLDYSGFINAQSVFMVESGQPTNTGLKREFIKEQV 288
GT+DDLK AL++ LE+ G L KL+A+VRAE+F +LE + +P LSN NL+INEL+RDY +Y+G+ +A SVF+ ES QP + L R FI++++
Sbjct: 22 GTLDDLKDALVDALESSGALGKLRARVRAEVFKSLEPEELATRETAPPLSNANLIINELIRDYFEYNGYSHALSVFLSESCQPDDASLSRGFIRDEL 118
BLAST of mRNA_H-elongata_contig8481.16079.1 vs. uniprot
Match: A0A3P3Y7H4_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y7H4_PLABS) HSP 1 Score: 100 bits (249), Expect = 1.760e-22 Identity = 48/101 (47.52%), Postives = 72/101 (71.29%), Query Frame = 1
Query: 1 VGTIDDLKLALLENLENRGVLCKLKAQVRAEIFHTLEGPQNDVISPSLSNDNLLINELVRDYLDYSGFINAQSVFMVESGQPTNTGLKREFIKEQVRHRCQ 303
+ T+DDLK L E LE RGVL +L+A++RAEIF+ LE + D P LSN+N+++NEL+R+YL+++G+ N SVFM E+GQPT + F+++ + R Q
Sbjct: 483 MATLDDLKAVLRETLETRGVLSQLQARIRAEIFNALEDQEPD--RPRLSNENMIVNELIREYLEFNGYQNTLSVFMPETGQPTPAPFEAPFLEQHLHIRPQ 581
BLAST of mRNA_H-elongata_contig8481.16079.1 vs. uniprot
Match: A0A2P6NSJ0_9EUKA (LisH domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NSJ0_9EUKA) HSP 1 Score: 94.4 bits (233), Expect = 3.360e-22 Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = 1
Query: 1 VGTIDDLKLALLENLENRGVLCKLKAQVRAEIFHTLEGPQNDVISPSLSNDNLLINELVRDYLDYSGFINAQSVFMVESGQPTNTGLKREFIKEQV 288
+ T+++LK L E LE RG L KL+AQVRAEIFHTLEG + LSNDNL++NEL+ +YL ++ + +A SVFM ESGQP ++ L R + E V
Sbjct: 1 MATLEELKTVLQETLEARGTLDKLRAQVRAEIFHTLEGGEQ---REQLSNDNLIVNELIHEYLVFNKYYHADSVFMTESGQPRDS-LARPLLAEAV 92
BLAST of mRNA_H-elongata_contig8481.16079.1 vs. uniprot
Match: A0A024GKL4_9STRA (LisH domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GKL4_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 6.940e-22 Identity = 45/102 (44.12%), Postives = 67/102 (65.69%), Query Frame = 1
Query: 7 TIDDLKLALLENLENRGVLCKLKAQVRAEIFHTLEGPQNDVISPSLSNDNLLINELVRDYLDYSGFINAQSVFMVESGQPTNTGLKREFIKEQVRHRCQGHF 312
++ +LK L E LE RG L ++KA++RAEIF L+ + P LSN+NL++NEL+R+YL+Y+G+ +A SVF+ ESGQPT R F+ ++ R F
Sbjct: 7 SLSELKEVLKETLETRGCLGQIKARIRAEIFSALD--DQSIPKPELSNENLILNELIREYLEYNGYRHALSVFLPESGQPTEKAFPRSFLSSELGVREDARF 106
BLAST of mRNA_H-elongata_contig8481.16079.1 vs. uniprot
Match: A0A5D6XNU9_9STRA (LisH domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XNU9_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 8.760e-22 Identity = 46/95 (48.42%), Postives = 67/95 (70.53%), Query Frame = 1
Query: 4 GTIDDLKLALLENLENRGVLCKLKAQVRAEIFHTLEGPQNDVISPSLSNDNLLINELVRDYLDYSGFINAQSVFMVESGQPTNTGLKREFIKEQV 288
++ DLK L + L+ RG L +LKA++RAE+F L+ DV P LSN+NL+INELVR+YL+Y+G+ +A SVF+ ESGQP REF+ +++
Sbjct: 11 ASLSDLKDVLKQTLDARGSLGQLKARIRAEVFAALD--DQDVPKPRLSNENLVINELVREYLEYNGYRHALSVFLPESGQPAEKPFSREFLSQEL 103
BLAST of mRNA_H-elongata_contig8481.16079.1 vs. uniprot
Match: A0A267H407_9PLAT (LisH domain-containing protein (Fragment) n=3 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267H407_9PLAT) HSP 1 Score: 92.4 bits (228), Expect = 1.150e-21 Identity = 50/107 (46.73%), Postives = 72/107 (67.29%), Query Frame = 1
Query: 1 VGTIDDLKLALLENLENRGVLCKLKAQVRAEIFHTLEGPQ-NDVISPSLSNDNLLINELVRDYLDYSGFINAQSVFMVESGQPTNTGLKREFIKEQVRHR----CQG 306
+ ++D+LK AL ENLE+RGVL ++A +RAEI+ +LE P+ + P LSN+NLLINEL+R+YL+++ + NA SV ESGQP L R + ++ R CQG
Sbjct: 9 MASVDELKSALKENLESRGVLQDIRASLRAEIYRSLEEPRPSGQQRPGLSNENLLINELIREYLEFNEYSNAASVLAAESGQP-QARLSRSLLSRELNLREDPSCQG 114 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8481.16079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8481.16079.1 >prot_H-elongata_contig8481.16079.1 ID=prot_H-elongata_contig8481.16079.1|Name=mRNA_H-elongata_contig8481.16079.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp VGTIDDLKLALLENLENRGVLCKLKAQVRAEIFHTLEGPQNDVISPSLSNback to top mRNA from alignment at H-elongata_contig8481:5452..6229+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8481.16079.1 ID=mRNA_H-elongata_contig8481.16079.1|Name=mRNA_H-elongata_contig8481.16079.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=778bp|location=Sequence derived from alignment at H-elongata_contig8481:5452..6229+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8481:5452..6229+ >mRNA_H-elongata_contig8481.16079.1 ID=mRNA_H-elongata_contig8481.16079.1|Name=mRNA_H-elongata_contig8481.16079.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig8481:5452..6229+ (Himanthalia elongata Himel1 dioecious)back to top |