mRNA_H-elongata_contig848.16078.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig848.16078.1
Unique NamemRNA_H-elongata_contig848.16078.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig848.16078.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA)

HSP 1 Score: 171 bits (432), Expect = 3.000e-44
Identity = 130/451 (28.82%), Postives = 208/451 (46.12%), Query Frame = 1
Query:    1 KCRLVFQGFWQVEGVHYMENYSSMPATASIRMILATAATKDGELRHFDAEQTCLKADIDYEFYIEIPE---EYQEFPGAVG----------------------------HLNKTIYRLTKVDQCVFRKVVDGKAEVVVVVHVNDILAHAKGKATMERFAAELGQKFKLKDVGDARYSLRCHITRNRKVRELNIDQHLYVESMVETFD--------------------------------------------------IRSDIASAVRAVVRFFENPGPAHKKAVMKIIQYLLHAKDWGITYGGQDGRLCMEAYTDSDFGACLDTRRSISDAVLMLVKEAISWYSRMQEVTASGTSEAE*---SEAVKEVLRLRQVQECMEPLMRVGAVNVFKGNEWVIKLATNKHANRRTKHIDVKYNMVRGAFDAQKVRIVYVRPEYQHANFLTKPLDKQ 1101
            K RLV +G+ Q  G+ Y E YS +    S+R +LA    +  E+   D +   L  +++ E Y+E+PE   E  +   A G                            HL  T +     D CV+ +  +G+ E +V ++V+D+L  ++ KA +    A + +KF++KD+G AR+ +   I  + + R L I Q  Y ES+++ F                                                    R DI+ AV  + RF ENPG  H  A +K+++YLL  KD GI Y G  G    EAY+D+D+    D RRS+S  +LML    + W S  Q+  A  ++EAE    S+ VKE + +R++ + +    +VGA  +++ N+  + LA N     RTKHID++Y+ +R    + +V + YV  + Q A F+TK L  +
Sbjct:  130 KARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQ-PEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKEIGA-EQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSSEVELEYVDTKNQLAYFMTKGLSSK 577          
BLAST of mRNA_H-elongata_contig848.16078.1 vs. uniprot
Match: A0A6A3Q8N8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q8N8_9STRA)

HSP 1 Score: 171 bits (432), Expect = 4.540e-44
Identity = 130/451 (28.82%), Postives = 207/451 (45.90%), Query Frame = 1
Query:    1 KCRLVFQGFWQVEGVHYMENYSSMPATASIRMILATAATKDGELRHFDAEQTCLKADIDYEFYIEIPE---EYQEFPGAVG----------------------------HLNKTIYRLTKVDQCVFRKVVDGKAEVVVVVHVNDILAHAKGKATMERFAAELGQKFKLKDVGDARYSLRCHITRNRKVRELNIDQHLYVESMVETFD--------------------------------------------------IRSDIASAVRAVVRFFENPGPAHKKAVMKIIQYLLHAKDWGITYGGQDGRLCMEAYTDSDFGACLDTRRSISDAVLMLVKEAISWYSRMQEVTASGTSEAE*---SEAVKEVLRLRQVQECMEPLMRVGAVNVFKGNEWVIKLATNKHANRRTKHIDVKYNMVRGAFDAQKVRIVYVRPEYQHANFLTKPLDKQ 1101
            K RLV +G+ Q   + Y E YS +    SIR +L   + +  E+   D +   L   ++ E Y+E+PE   E  E   A G                            HL    +     D CV+ +  +G+ E +V ++V+++L  ++ KA +    A + +KF++KD+G AR+ L   I  N + R L I Q  Y ES+++TF                                                    R D++ AV  + RF ENPG  H  + +K ++YLL  KD GI Y GQ G   +EAY+D+D+    D RRS+S  +LML    + W S  Q+  A  ++EAE    S+ VKE + +R++ + +    +VGA  +++ N+  + LA N     RTKHID++Y+ +R      +V + YV  + Q A+F+TK L  +
Sbjct:  163 KARLVAKGYSQRHDIDYEETYSPVAYLNSIRAMLVKCSAEGMEIERCDFDTAFLYGKLEEEIYMELPEGLRELLELAEAQGEDDVVCMLLQSLYGLKHASRVWNDTIDKHLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDNMLIASRQKAVITSVKAGIAEKFRIKDLGRARFILGIEIDYNMERRTLGISQKAYTESIIKTFGQENAKPCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSVVGSLMYLACGTRPDVSVAVAKLSRFLENPGEKHWDSGIKAVRYLLKTKDVGIVYDGQLGTH-LEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGA-EQVGATEIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVGNEVELEYVDTKNQLADFMTKGLSSK 610          
BLAST of mRNA_H-elongata_contig848.16078.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA)

HSP 1 Score: 171 bits (432), Expect = 2.920e-43
Identity = 131/451 (29.05%), Postives = 213/451 (47.23%), Query Frame = 1
Query:    1 KCRLVFQGFWQVEGVHYMENYSSMPATASIRMILATAATKDGELRHFDAEQTCLKADIDYEFYIEIPEEYQEF---------PGAVGHLNKTIYRLTKV----------------------DQCVFRKVVDGKAEVVVVVHVNDILAHAKGKATMERFAAELGQKFKLKDVGDARYSLRCHITRNRKVRELNIDQHLYVESMVETFD--------------------------------------------------IRSDIASAVRAVVRFFENPGPAHKKAVMKIIQYLLHAKDWGITYGGQDGRLCMEAYTDSDFGACLDTRRSISDAVLMLVKEAISWYSRMQEVTASGTSEAE*---SEAVKEVLRLRQVQECMEPLMRVGAVNVFKGNEWVIKLATNKHANRRTKHIDVKYNMVRGAFDAQKVRIVYVRPEYQHANFLTKPLDKQ 1101
            K RLV +G+ Q  G+ Y E YS +    SIR +L   + +  E+   D +   L   ++ E Y+E+PEE +E             V  L +++Y L +                       D CV+ +  +G+ E +V ++V+D+L  ++  A +    A + +KF++KD+G AR+ L   I  + + R L I Q  Y ES+++ F                                                    R DI+ AV  + RF ENPG  H  A +K+++YLL  KD GI Y G  G   +EAY+D+D+    D RRS+S  +LML +  + W S  Q+  A  ++EAE    S+ VKE + +R++ + +    +VGA  +++ N+  + LA N     RTKHID++Y+ VR    + +V++ YV  + Q A+F+TK L  +
Sbjct:  461 KARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLEKCSAEGMEIEQCDVDTAFLYEKLEAEIYMELPEELRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKNLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIASRQMAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQLTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGAQ-LEAYSDADWAGNRDDRRSVSGMLLMLCRAPVVWRSTFQKTVALSSTEAEYLALSDCVKECVWMRRLLKDIGA-EQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFVREKAVSNEVKLEYVDTKNQLADFMTKGLSSK 908          
BLAST of mRNA_H-elongata_contig848.16078.1 vs. uniprot
Match: A0A6A3DSS8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DSS8_9STRA)

HSP 1 Score: 166 bits (420), Expect = 3.040e-42
Identity = 131/451 (29.05%), Postives = 212/451 (47.01%), Query Frame = 1
Query:    1 KCRLVFQGFWQVEGVHYMENYSSMPATASIRMILATAATKDGELRHFDAEQTCLKADIDYEFYIEIPE---EYQEFPGAVGH------LNKTIYRLTKV----------------------DQCVFRKVVDGKAEVVVVVHVNDILAHAKGKATMERFAAELGQKFKLKDVGDARYSLRCHITRNRKVRELNIDQHLYVESMVETFD--------------------------------------------------IRSDIASAVRAVVRFFENPGPAHKKAVMKIIQYLLHAKDWGITYGGQDGRLCMEAYTDSDFGACLDTRRSISDAVLMLVKEAISWYSRMQEVTASGTSEAE*---SEAVKEVLRLRQVQECMEPLMRVGAVNVFKGNEWVIKLATNKHANRRTKHIDVKYNMVRGAFDAQKVRIVYVRPEYQHANFLTKPLDKQ 1101
            K RLV +G+ Q  G+ Y E YS +    SIR +LA  + +  E+   D +   L   ++ E Y+E+ E   E  E   A G       L +++Y L +                       D CV+ +  +G+ E +V ++V+D+L  ++ KA +    A + +KF++KD+G AR+ L   I  + + R L I Q  Y ES+++ F                                                    R DI+ AV  + RF ENPG  H  A +K+++YLL  KD GI Y G  G   +EAY+D+D+    D RRS+S  +LML    + W S  Q+  A  ++EAE    S+ VKE + +R++ + +    +VGA  +++ N+  + LA N      TKHID++Y+ +R    + +V++ YV  + Q A+F+TK L  +
Sbjct:  195 KARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELLEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADDDPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQ-LEAYSDADWAGNWDDRRSVSGMLLMLCGAPVVWRSSFQKTVALSSTEAEYMALSDCVKECVWMRRLIKDIGA-EQVGATVIYEDNQGAMALAKNVGYQAGTKHIDIRYHFIRDKAVSNEVKLEYVDTKNQLADFMTKGLSSK 642          
BLAST of mRNA_H-elongata_contig848.16078.1 vs. uniprot
Match: A0A6A3Q978_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q978_9STRA)

HSP 1 Score: 166 bits (420), Expect = 8.960e-42
Identity = 127/449 (28.29%), Postives = 204/449 (45.43%), Query Frame = 1
Query:    1 KCRLVFQGFWQVEGVHYMENYSSMPATASIRMILATAATKDGELRHFDAEQTCLKADIDYEFYIEIPE---EYQEFPGAVG----------------------------HLNKTIYRLTKVDQCVFRKVVDGKAEVVVVVHVNDILAHAKGKATMERFAAELGQKFKLKDVGDARYSLRCHITRNRKVRELNIDQHLYVESMVETFD------------------------------------------------IRSDIASAVRAVVRFFENPGPAHKKAVMKIIQYLLHAKDWGITYGGQDGRLCMEAYTDSDFGACLDTRRSISDAVLMLVKEAISWYSRMQEVTASGTSEAE*---SEAVKEVLRLRQVQECMEPLMRVGAVNVFKGNEWVIKLATNKHANRRTKHIDVKYNMVRGAFDAQKVRIVYVRPEYQHANFLTKPLDKQ 1101
            K RLV +G+ Q  G+ Y E Y  +    S+R +LA    +  E+   D +   L   ++ E Y+E+PE   E  +   A G                            HL    +     D CV+ +  +G  E +V ++V+D+L  ++ KA +    A + +KF++KD+G AR+ L   I  + + R L I Q  Y ES+++ F                                                  R DI+ AV  + RF ENPG  H  A +K+++YLL  KD GI Y G  G   +EAY+++D+    D RRS+S  +LML    + W S  Q+  A  ++EAE    S+ VKE + +R + + +    +VG   +++ N+  + LA N     RTKHID++Y+ +R    + +V + YV  + Q A+F+TK L  +
Sbjct:  363 KARLVVKGYSQRHGIDYEETYLPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGKLEEEIYMELPEGLKELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNEMINKHLKSMGFEPADADPCVYTRG-EGDDECIVCLYVDDMLIASRQKAVIASVKARIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGRENAKPCLTPLEPGVNLTKADEPQTEEAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQ-LEAYSNADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRHLLKDIGT-EQVGVTVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSTEVELEYVDTKNQLADFMTKGLSSK 808          
BLAST of mRNA_H-elongata_contig848.16078.1 vs. uniprot
Match: A0A6G0QQ26_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=20 Tax=Phytophthora TaxID=4783 RepID=A0A6G0QQ26_9STRA)

HSP 1 Score: 166 bits (419), Expect = 1.520e-41
Identity = 131/451 (29.05%), Postives = 213/451 (47.23%), Query Frame = 1
Query:    1 KCRLVFQGFWQVEGVHYMENYSSMPATASIRMILATAATKDGELRHFDAEQTCLKADIDYEFYIEIPE---EYQEFPGAVGH------LNKTIYRLTKV----------------------DQCVFRKVVDGKAEVVVVVHVNDILAHAKGKATMERFAAELGQKFKLKDVGDARYSLRCHITRNRKVRELNIDQHLYVESMVE--------------------------------------------------TFDIRSDIASAVRAVVRFFENPGPAHKKAVMKIIQYLLHAKDWGITYGGQDGRLCMEAYTDSDFGACLDTRRSISDAVLMLVKEAISWYSRMQEVTASGTSEAE*---SEAVKEVLRLRQVQECMEPLMRVGAVNVFKGNEWVIKLATNKHANRRTKHIDVKYNMVRGAFDAQKVRIVYVRPEYQHANFLTKPLDKQ 1101
            K RLV +G+ Q  G++Y E YS +    SIR +LA  + +  E+   D +   L   ++ E Y+E+ E   E  E   A G       L +++Y L +                       D CV+ +  +G+ E +V ++V+D+L  ++ KA +    A + +KF++KD+G AR+ L   I  N + R L I Q  Y ES+++                                                  +   R DI+ AV  + RF ENPG  H  A +K+++YLL  KD GI Y G  G   +EAY+D+D+    D RRS+S  +LML    + W S  Q+  A  ++EAE    S+ VKE + +R++ + +    +VGA  +++ N+  + LA N      TKHID++Y+ +R    + +V++ YV  + Q A+F+TK L  +
Sbjct:  439 KDRLVAKGYSQRHGINYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELLEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADDDPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYNMERRTLGISQKAYTESIIKKVGQENAKPCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQ-LEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSSFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGA-EQVGATVIYEDNQGAMALAKNVGYQAGTKHIDIRYHFIRDKAVSNEVKLEYVDTKNQLADFMTKGLSSK 886          
BLAST of mRNA_H-elongata_contig848.16078.1 vs. uniprot
Match: A0A438IQ82_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IQ82_VITVI)

HSP 1 Score: 164 bits (414), Expect = 8.590e-41
Identity = 128/431 (29.70%), Postives = 203/431 (47.10%), Query Frame = 1
Query:    1 KCRLVFQGFWQVEGVHYMENYSSMPATASIRMILATAATKDGELRHFDAEQTCLKADIDYEFYIEIPEEYQEFPGA--VGHLNKTIYRLTK----------------------VDQCVFRKVVDGKAEVVVVVHVNDILAHAKGKATMERFAAELGQKFKLKDVGDARYSLRCHITRNRKVRELNIDQHLYVESMVETFDIRS------------------------DIASAVRAVVRFFENPGPAHKKAVMKIIQYLLHAKDWGITYGGQDGRLCMEAYTDSDFGACLDTRRSISDAVLMLVKEAISWYSRMQEVTASGTSEAE*S---EAVKEVLRLRQ-------VQECMEPLMRVGAVNVFKGNEWVIKLATNKHANRRTKHIDVKYNMVRGAFDAQKVRIVYVRPEYQHANFLTKPLDKQRFYKHA 1119
            K RLV +GF Q EG+ Y + +S +    S+R+I+A  A  D EL   D +   L  ++D + Y+E PE + +      V  L K+IY L +                      VDQC++ KV  G   + ++++V+DIL  +     +      L + F + D+G+A Y +   I R+R    L + Q  Y++ ++E F+++S                        DI+ AV  + R+  +PG  H KA  K+++YL   KD+ +TY   + +L +  Y+DSD+G CLD+ +S S  V ML   AISW S  Q +TAS T EAE     EA    L LR        V    +PL       ++  N   +  + N   +  +KH+D+KY +V+     Q+V I  +R     A+ LTK L  + + +H 
Sbjct:  752 KARLVAKGFTQKEGIDYKDTFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFLNGNLDEDIYMEQPEGFAKKGNEHLVCKLKKSIYGLKQASRQWYIKFNNTITSFGFKENIVDQCIYLKV-SGSKFIFLILYVDDILLASSDLGLLRETKEYLSKNFHMVDMGEANYVIGIEIFRDRSRGVLGLSQKGYIDRVLERFNMQSCSSGIAPILKAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYKRSE-QLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLRNFISGLGVVDSIAKPL------RIYCDNTAAVFFSKNGKFSSGSKHMDLKYLVVKERVQKQQVSIENIRTTLMVADPLTKGLPPKAYLEHV 1174          
BLAST of mRNA_H-elongata_contig848.16078.1 vs. uniprot
Match: A0A6A3GLU4_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GLU4_9STRA)

HSP 1 Score: 150 bits (379), Expect = 6.070e-39
Identity = 97/285 (34.04%), Postives = 162/285 (56.84%), Query Frame = 1
Query:  271 DQCVFRKVVDGKAEVVVVVHVNDILAHAKGKATMERFAAELGQKFKLKDVGDARYSLRCHITRNRKVRELNIDQHLYVESMVETFDIRS-----DIASAVRAVVRFFENPGPAHKKAVMKIIQYLLHAKDWGITYGGQDGRLCMEAYTDSDFGACLDTRRSISDAVLMLVKEAISWYSRMQEVTASGTSEAE*---SEAVKEVLRLRQVQECMEPLMRVGAVNVFKGNEWVIKLATNKHANRRTKHIDVKYNMVRGAFDAQKVRIVYVRPEYQHANFLTKPLDKQ 1101
            D+CV+ +  +G+ E +V ++V+D+L  ++ KA +    A + +KF++KD+G AR+ L   I  + + R L I Q  Y ES+++ F   +          V  + RF ENPG  H  A +K+++YLL  KD GI Y G  G   +EAY+D+D+    D RRS+S  +LML    + W S  Q+  A  ++EAE    S+ VKE + +R++ + +    +VGA  +++ N+  + LA N     RTKHID++Y+ +R    + +V + Y+  + Q A+F+TK L  +
Sbjct:    9 DRCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLCISQKAYTESIIKKFGQENAKPCLTPLEPVAKLSRFLENPGEKHCDAGIKVVRYLLKTKDVGIVYDGLLGTQ-LEAYSDADWAGNQDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECIWMRRLLKDIGA-DQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSNEVELEYMDTKNQLADFMTKGLSSK 290          
BLAST of mRNA_H-elongata_contig848.16078.1 vs. uniprot
Match: A0A8H7NVE6_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Postia placenta TaxID=104341 RepID=A0A8H7NVE6_9APHY)

HSP 1 Score: 156 bits (394), Expect = 1.940e-38
Identity = 121/444 (27.25%), Postives = 202/444 (45.50%), Query Frame = 1
Query:    1 KCRLVFQGFWQVEGVHYMENYSSMPATASIRMILATAATKDGELRHFDAEQTCLKADIDYEFYIEIPEEYQEFPGA---VGHLNKTIYRLTKVDQCVFRKVVDGKAEV---------------------VVVVHVNDILAHAKGKATMERFAAELGQKFKLKDVGDARYSLRCHITRNRKVRELNIDQHLYVESMVETFDI------------------------------------------------RSDIASAVRAVVRFFENPGPAHKKAVMKIIQYLLHAKDWGITYG-GQDGRLCMEAYTDSDFGACLDTRRSISDAVLMLVKEAISWYSRMQEVTASGTSEAE*---SEAVKEVLRLRQVQECMEPLMRVGAVNVFKGNEWVIKLATNKHANRRTKHIDVKYNMVRGAFDAQKVRIVYVRPEYQHANFLTKPLDKQR 1104
            K RL  QGF QV GV Y +  +     AS+R++LA AA  D E+   D +   L  D+D   Y+  P  + E PG    +  L K +Y L +  +  ++K+ +   E+                     ++V+HV+D       K  M+    +LG +F++ D+G+AR+ L   I RNR  R +++ Q  Y++++++ F +                                                R DIA AV  + +F  NP P H +A  ++++YL   +D  +T+G   DG   +  Y+D+D+ A    R SIS  V +    AI+W SR Q + A  ++EAE    S+  +E+L LR +   +       ++ +F  N+  I +A N   N RTKHID++Y+ +R   D+ +  + Y       A+ LTK L +++
Sbjct:  284 KARLCAQGFSQVHGVDYDQTAAPTARLASLRLVLALAAANDWEVHQIDFKNAYLNGDLDETIYMRQPPGF-EVPGREDWIWRLLKALYGLKQAGRLWYQKICELFDEIGLSRSCHDFGVFFLFLPGIIIIIVIHVDDCTLVTNTKRIMDDLKKQLGARFEIVDLGEARWLLGFEIHRNRATRTISLSQASYIDTVLDRFHMTDAYTLTIPMDPHVTLHGLELTDDERREMARKPYARLVGSLMYAAIGTRPDIAFAVSTLAQFMANPAPVHWEAAKRVLRYLKGTRDLRLTFGLSTDG---LTGYSDADW-ASQPHRHSISGHVFLFTSGAITWSSRKQPIIALSSTEAEYIAASDTTRELLWLRALFAELTS-SSPASIPLFSDNQSAITIAKNGLLNARTKHIDLRYHFIREVLDSGRATLDYCPTNDMVADLLTKALVRRK 721          
BLAST of mRNA_H-elongata_contig848.16078.1 vs. uniprot
Match: A0A6H5KAQ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAQ1_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 4.700e-38
Identity = 112/397 (28.21%), Postives = 190/397 (47.86%), Query Frame = 1
Query:   25 FWQVEGVHYMENYSSMPATASIRMILATAATKDGELRHFDAEQTCLKADIDYEFYIEIPEEYQEFPGAVGHLNKTIYRLTKV----------------------DQCVFRKVVDGKAEVVVVVHVNDILAHAKGKATMERFAAELGQKFKLKDVGDARYSLRCHITRNRKVRELNIDQH---LYVESMVETFDIRSDIASAVRAVVRFFENPGPAHKKAVMKIIQYLLHAKDWGITYG-GQDGRLCMEAYTDSDFGACLDTRRSISDAVLMLVKEAISWYSRMQEVTASGTSEAE*---SEAVKEVLRLRQVQECMEPLMRVGAVNVFKGNEWVIKLATNKHANRRTKHIDVKYNMVRGAFDAQKVRIVYVRPEYQHANFLTKPLDKQRFYKHANFI 1128
            F + EGV + E +S  P+  SIR++ A A   D +L HFDAEQ  +++++D   +I +P       G V  L +++Y L +                       D CV R +  G   +VVV+HV+DI +        +  A ++  KF +    +    +   + +     E ++D+    L    M      R DI +AVRAV R+   P   H +A + ++ ++     +GIT+  G  G   ME + DSDF      RRS+S A++M     + +  R Q+     ++EAE    S+ +KE + LR + + + P   VG   V++ N     LA+   +   +KHID++++ +R      + ++V+ R + Q A+FLTKPL K+ F  H +F+
Sbjct:  593 FEEREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQAVAEKIVAKFGVTTDKETPMVVGLKLEQY-DADEPDVDEPFRLLVGHLMWLANQTRPDILNAVRAVARYSHAPKRLHWEAALHVLMFVRFTSGYGITFQRGTVGGDHMELFVDSDFANKATDRRSVSGALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRHLWKFVFPGRDVGCTPVWEDNVGAFHLASKSASTPNSKHIDIRHHFIRERVARGEFKVVHARSDLQRADFLTKPLPKETFCAHRDFV 988          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig848.16078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3Q908_9STRA3.000e-4428.82Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3Q8N8_9STRA4.540e-4428.82Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3YGI7_9STRA2.920e-4329.05Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3DSS8_9STRA3.040e-4229.05Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3Q978_9STRA8.960e-4228.29Retrovirus-related Pol polyprotein from transposon... [more]
A0A6G0QQ26_9STRA1.520e-4129.05Retrovirus-related Pol polyprotein from transposon... [more]
A0A438IQ82_VITVI8.590e-4129.70Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3GLU4_9STRA6.070e-3934.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H7NVE6_9APHY1.940e-3827.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAQ1_9PHAE4.700e-3828.21Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig848contigH-elongata_contig848:11110..12450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue4.3e-24
Seed eggNOG ortholog164328.Phyra85763
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1128
Cds size783
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig848.16078.1prot_H-elongata_contig848.16078.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig848 11161..12156 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931251.567048-UTR-H-elongata_contig848:11109..111601622931251.567048-UTR-H-elongata_contig848:11109..11160Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig848 11110..11160 +
1691679760.2551124-UTR-H-elongata_contig848:11109..111601691679760.2551124-UTR-H-elongata_contig848:11109..11160Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig848 11110..11160 +
1622931251.6273952-UTR-H-elongata_contig848:12156..124501622931251.6273952-UTR-H-elongata_contig848:12156..12450Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig848 12157..12450 +
1691679760.298638-UTR-H-elongata_contig848:12156..124501691679760.298638-UTR-H-elongata_contig848:12156..12450Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig848 12157..12450 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931251.5830042-CDS-H-elongata_contig848:11160..113701622931251.5830042-CDS-H-elongata_contig848:11160..11370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig848 11161..11370 +
1691679760.2717757-CDS-H-elongata_contig848:11160..113701691679760.2717757-CDS-H-elongata_contig848:11160..11370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig848 11161..11370 +
1622931251.5968602-CDS-H-elongata_contig848:11436..117031622931251.5968602-CDS-H-elongata_contig848:11436..11703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig848 11437..11703 +
1691679760.2801552-CDS-H-elongata_contig848:11436..117031691679760.2801552-CDS-H-elongata_contig848:11436..11703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig848 11437..11703 +
1622931251.6131306-CDS-H-elongata_contig848:11850..121561622931251.6131306-CDS-H-elongata_contig848:11850..12156Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig848 11851..12156 +
1691679760.2887344-CDS-H-elongata_contig848:11850..121561691679760.2887344-CDS-H-elongata_contig848:11850..12156Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig848 11851..12156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig848.16078.1

>prot_H-elongata_contig848.16078.1 ID=prot_H-elongata_contig848.16078.1|Name=mRNA_H-elongata_contig848.16078.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=261bp
MENYSSMPATASIRMILATAATKDGELRHFDAEQTCLKADIDYEFYIEIP
EEYQEFPGAVGHLNKTIYRLTKVDQCVFRKVVDGKAEVVVVVHVNDILAH
AKGKATMERFAAELGQKFKLKDVGDARYSLRCHITRNRKVRELNIDQHLY
VESMVETFDIRSDIASAVRAVVRFFENPGPAHKKAVMKIIQYLLHAKDWG
ITYGGQDGRLCMEAYTDSDFGACLDTRRSISDAVLMLVKEAISWYSRMQE
VTASGTSEAE*
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mRNA from alignment at H-elongata_contig848:11110..12450+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig848.16078.1 ID=mRNA_H-elongata_contig848.16078.1|Name=mRNA_H-elongata_contig848.16078.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1341bp|location=Sequence derived from alignment at H-elongata_contig848:11110..12450+ (Himanthalia elongata Himel1 dioecious)
AAGTGCCGACTTGTCTTTCAAGGGTTCTGGCAGGTGGAAGGTGTGCACTA CATGGAAAATTACTCGTCCATGCCAGCGACTGCGTCAATTCGGATGATTT TGGCGACGGCAGCGACCAAAGATGGAGAGCTACGCCATTTTGACGCGGAG CAGACATGCTTGAAGGCTGACATCGATTATGAATTTTACATTGAGATACC AGAGGAGTACCAGGAGTTTCCGGGGGCAGTGGGACATCTGAACAAGACCA TTTATAGACTCGTATAGGTGGAGGGGTGCTGGAACAACAAGGTCTGCGAT GATATGACGGCGATTTGATTCGAGCAGACAAAGGTGGATCAGTGCGTGTT CCGTAAGGTCGTTGACGGCAAGGCGGAAGTGGTGGTGGTCGTGCACGTGA ACGACATTCTTGCTCACGCCAAAGGCAAAGCGACGATGGAAAGATTCGCT GCTGAGCTTGGGCAGAAGTTCAAATTGAAGGACGTGGGCGACGCCAGGTA CTCCCTGCGCTGTCACATCACTAGGAACCGCAAGGTACGCGAGTTGAATA TCGATCAACACTTGTACGTGGAATCGATGGTGGAAACGTTCGACGTCAAC AAGGGAAGTAAGATACCGGCTACGTCGGGGGTTCCAACACTCTCAAAGGC GGACGAGCCGTCGAACTCGGAGGCAAACGCCGAAATGAGAAAGTTTCTAT AACGGGAGGCAGTGGGGGTGCTTATGTGGACGGTAACGAAGATACGGTCC GATATTGCGAGCGCAGTACGCGCTGTGGTCAGGTTCTTCGAAAATCCTGG GCCGGCGCATAAGAAGGCAGTGATGAAGATCATACAGTATCTTCTTCACG CGAAGGATTGGGGTATTACATACGGTGGACAGGATGGTAGACTCTGTATG GAGGCATACACGGATTCGGATTTCGGAGCCTGTCTGGATACGAGGCGATC GATATCAGATGCGGTGTTGATGCTGGTGAAGGAGGCGATCAGCTGGTACT CAAGGATGCAAGAAGTGACAGCATCGGGTACCTCGGAGGCAGAGTAATCA GAGGCGGTAAAAGAGGTTCTACGTTTGAGACAGGTTCAGGAGTGCATGGA ACCGTTGATGAGGGTCGGTGCAGTAAATGTGTTCAAGGGCAATGAGTGGG TCATCAAGTTGGCCACCAACAAGCATGCTAATCGGAGGACAAAGCACATT GATGTGAAATACAATATGGTGAGGGGCGCGTTTGACGCGCAAAAGGTTAG AATAGTGTATGTAAGGCCAGAATATCAGCACGCAAACTTCCTCACCAAAC CGCTAGACAAGCAGAGGTTTTACAAGCACGCGAATTTTATC
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Coding sequence (CDS) from alignment at H-elongata_contig848:11110..12450+

>mRNA_H-elongata_contig848.16078.1 ID=mRNA_H-elongata_contig848.16078.1|Name=mRNA_H-elongata_contig848.16078.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1566bp|location=Sequence derived from alignment at H-elongata_contig848:11110..12450+ (Himanthalia elongata Himel1 dioecious)
ATGGAAAATTACTCGTCCATGCCAGCGACTGCGTCAATTCGGATGATTTT
GGCGACGGCAGCGACCAAAGATGGAGAGCTACGCCATTTTGACGCGGAGC
AGACATGCTTGAAGGCTGACATCGATTATGAATTTTACATTGAGATACCA
GAGGAGTACCAGGAGTTTCCGGGGGCAGTGGGACATCTGAACAAGACCAT
TTATAGACTCATGGAAAATTACTCGTCCATGCCAGCGACTGCGTCAATTC
GGATGATTTTGGCGACGGCAGCGACCAAAGATGGAGAGCTACGCCATTTT
GACGCGGAGCAGACATGCTTGAAGGCTGACATCGATTATGAATTTTACAT
TGAGATACCAGAGGAGTACCAGGAGTTTCCGGGGGCAGTGGGACATCTGA
ACAAGACCATTTATAGACTCACAAAGGTGGATCAGTGCGTGTTCCGTAAG
GTCGTTGACGGCAAGGCGGAAGTGGTGGTGGTCGTGCACGTGAACGACAT
TCTTGCTCACGCCAAAGGCAAAGCGACGATGGAAAGATTCGCTGCTGAGC
TTGGGCAGAAGTTCAAATTGAAGGACGTGGGCGACGCCAGGTACTCCCTG
CGCTGTCACATCACTAGGAACCGCAAGGTACGCGAGTTGAATATCGATCA
ACACTTGTACGTGGAATCGATGGTGGAAACGTTCGACACAAAGGTGGATC
AGTGCGTGTTCCGTAAGGTCGTTGACGGCAAGGCGGAAGTGGTGGTGGTC
GTGCACGTGAACGACATTCTTGCTCACGCCAAAGGCAAAGCGACGATGGA
AAGATTCGCTGCTGAGCTTGGGCAGAAGTTCAAATTGAAGGACGTGGGCG
ACGCCAGGTACTCCCTGCGCTGTCACATCACTAGGAACCGCAAGGTACGC
GAGTTGAATATCGATCAACACTTGTACGTGGAATCGATGGTGGAAACGTT
CGACATACGGTCCGATATTGCGAGCGCAGTACGCGCTGTGGTCAGGTTCT
TCGAAAATCCTGGGCCGGCGCATAAGAAGGCAGTGATGAAGATCATACAG
TATCTTCTTCACGCGAAGGATTGGGGTATTACATACGGTGGACAGGATGG
TAGACTCTGTATGGAGGCATACACGGATTCGGATTTCGGAGCCTGTCTGG
ATACGAGGCGATCGATATCAGATGCGGTGTTGATGCTGGTGAAGGAGGCG
ATCAGCTGGTACTCAAGGATGCAAGAAGTGACAGCATCGGGTACCTCGGA
GGCAGAGTAAATACGGTCCGATATTGCGAGCGCAGTACGCGCTGTGGTCA
GGTTCTTCGAAAATCCTGGGCCGGCGCATAAGAAGGCAGTGATGAAGATC
ATACAGTATCTTCTTCACGCGAAGGATTGGGGTATTACATACGGTGGACA
GGATGGTAGACTCTGTATGGAGGCATACACGGATTCGGATTTCGGAGCCT
GTCTGGATACGAGGCGATCGATATCAGATGCGGTGTTGATGCTGGTGAAG
GAGGCGATCAGCTGGTACTCAAGGATGCAAGAAGTGACAGCATCGGGTAC
CTCGGAGGCAGAGTAA
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