prot_H-elongata_contig84792.16076.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig84792.16076.1
Unique Nameprot_H-elongata_contig84792.16076.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length71
Homology
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Match: D7G5V3_ECTSI (GTPase activating protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5V3_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 1.500e-35
Identity = 60/70 (85.71%), Postives = 65/70 (92.86%), Query Frame = 0
Query:    1 YVVDSLTDKYCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWDIFLLEDWKIFYRVCLALFK 70
            +V+DSLT K+C KLS QILA NLTPAMYATQWFLTAFTQRFPYD VTRVWD+FLLEDWK+FYRVCLALFK
Sbjct:  178 FVMDSLTKKHCEKLSNQILAHNLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK 247          
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Match: A0A6H5L2H2_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H2_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 1.030e-33
Identity = 60/70 (85.71%), Postives = 65/70 (92.86%), Query Frame = 0
Query:    1 YVVDSLTDKYCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWDIFLLEDWKIFYRVCLALFK 70
            +V+DSLT K+C KLS QILA NLTPAMYATQWFLTAFTQRFPYD VTRVWD+FLLEDWK+FYRVCLALFK
Sbjct:  531 FVMDSLTKKHCEKLSNQILAHNLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK 600          
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Match: A0A835Z8H8_9STRA (Rab-GTPase-TBC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8H8_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 8.700e-21
Identity = 43/70 (61.43%), Postives = 51/70 (72.86%), Query Frame = 0
Query:    1 YVVDSLTDKYCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWDIFLLEDWKIFYRVCLALFK 70
            YV+D L  K+  +L   + + ++ P MYA  WF+T FTQ FPYD VTRVWDIFL EDWKI YRVCLALFK
Sbjct:  531 YVMDGLALKFTPRLHNHLKSNDIDPTMYAHPWFMTCFTQSFPYDLVTRVWDIFLKEDWKIMYRVCLALFK 600          
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Match: A0A835YV67_9STRA (Rab-GTPase-TBC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV67_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.620e-20
Identity = 41/70 (58.57%), Postives = 51/70 (72.86%), Query Frame = 0
Query:    1 YVVDSLTDKYCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWDIFLLEDWKIFYRVCLALFK 70
            +V+DSLT+K+  KL   +   ++ P MYA  WF+T FTQ FPY+  TR WD+FL EDWKI YRVCLALFK
Sbjct:  514 HVMDSLTEKFVPKLFRHLQKHDIQPTMYAHPWFITCFTQAFPYELCTRTWDVFLEEDWKIMYRVCLALFK 583          
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Match: A0A225W6Z9_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W6Z9_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.310e-17
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 0
Query:    1 YVVDSLTDKYCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWDIFLLEDWKIFYRVCLALFK 70
            +V + L  +Y  +LSA + +  L P MY TQWFLT FT  FP++FVTRVWD FL E WK+ YRV LAL K
Sbjct:  251 FVFEGLFKQYMPQLSAHLESEGLHPTMYLTQWFLTLFTYNFPFEFVTRVWDAFLHEGWKVIYRVALALLK 320          
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Match: A0A3R6VS27_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6VS27_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 5.050e-16
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 0
Query:   10 YCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWDIFLLEDWKIFYRVCLALFK 70
            Y  KL+  + A  L P MYATQWF+T ++  FP++FVTRVWDI+L E WKI YRV +AL K
Sbjct:   95 YVPKLTDHLAAEGLHPTMYATQWFVTLYSYSFPFEFVTRVWDIYLHEGWKIVYRVAVALLK 155          
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Match: A0A8J5IBD6_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IBD6_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 6.430e-16
Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 0
Query:    1 YVVDSLTDKYCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWDIFLLEDWKIFYRVCLALFK 70
            +V + L  +   +LSA +    L P MY TQWFLT FT  FP++FVTRVWD FL E WK+ YRV LAL K
Sbjct:  202 FVFEGLFKQLMPQLSAHLENEGLHPTMYLTQWFLTLFTYNFPFEFVTRVWDTFLHEGWKVIYRVALALMK 271          
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Match: A0A485LF29_9STRA (Aste57867_20420 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LF29_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 8.830e-16
Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 0
Query:    2 VVDSLTDKYCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWDIFLLEDWKIFYRVCLALFK 70
            + +  T  Y  KL+  + A  L P MYATQWF+T ++  FP++FVTRVWDIFL E WKI YR+ +AL K
Sbjct:  499 IFEQCTKTYLPKLTEHMDAEGLHPTMYATQWFITLYSYSFPFEFVTRVWDIFLHEGWKIVYRIAIALLK 567          
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Match: H3GE06_PHYRM (Rab-GAP TBC domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=H3GE06_PHYRM)

HSP 1 Score: 79.0 bits (193), Expect = 1.100e-15
Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 0
Query:    1 YVVDSLTDKYCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWDIFLLEDWKIFYRVCLALFK 70
            +V  +L  +   +LSA +    L P MY TQWFLT FT  FP++FVTRVWD FL E WK+ YRV LAL K
Sbjct:  251 FVFQALLKQLMPQLSAHLENEGLHPTMYLTQWFLTLFTYNFPFEFVTRVWDSFLHEGWKVIYRVALALLK 320          
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Match: D0MU62_PHYIT (Rab-GAP TBC domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=D0MU62_PHYIT)

HSP 1 Score: 79.0 bits (193), Expect = 1.190e-15
Identity = 37/70 (52.86%), Postives = 46/70 (65.71%), Query Frame = 0
Query:    1 YVVDSLTDKYCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVWDIFLLEDWKIFYRVCLALFK 70
            ++ + L  +   +LSA +    L P MY TQWFLT FT  FP++FVTRVWD FL E WK+ YRV LAL K
Sbjct:  255 FIFEGLFKQLMPQLSAHLENEGLHPTMYLTQWFLTLFTYNFPFEFVTRVWDAFLHEGWKVIYRVALALMK 324          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84792.16076.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5V3_ECTSI1.500e-3585.71GTPase activating protein n=1 Tax=Ectocarpus silic... [more]
A0A6H5L2H2_9PHAE1.030e-3385.71Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A835Z8H8_9STRA8.700e-2161.43Rab-GTPase-TBC domain-containing protein n=1 Tax=T... [more]
A0A835YV67_9STRA1.620e-2058.57Rab-GTPase-TBC domain-containing protein n=1 Tax=T... [more]
A0A225W6Z9_9STRA2.310e-1755.71Rab-GAP TBC domain-containing protein n=1 Tax=Phyt... [more]
A0A3R6VS27_9STRA5.050e-1657.38Rab-GAP TBC domain-containing protein n=1 Tax=Apha... [more]
A0A8J5IBD6_9STRA6.430e-1654.29Rab-GAP TBC domain-containing protein n=1 Tax=Phyt... [more]
A0A485LF29_9STRA8.830e-1652.17Aste57867_20420 protein n=1 Tax=Aphanomyces stella... [more]
H3GE06_PHYRM1.100e-1554.29Rab-GAP TBC domain-containing protein n=6 Tax=Phyt... [more]
D0MU62_PHYIT1.190e-1552.86Rab-GAP TBC domain-containing protein n=10 Tax=Phy... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000195Rab-GTPase-TBC domainPFAMPF00566RabGAP-TBCcoord: 1..70
e-value: 1.3E-16
score: 60.9
IPR000195Rab-GTPase-TBC domainPROSITEPS50086TBC_RABGAPcoord: 1..57
score: 13.048
NoneNo IPR availableGENE3D1.10.472.80coord: 1..70
e-value: 1.1E-22
score: 82.3
NoneNo IPR availablePANTHERPTHR22957:SF499coord: 12..69
NoneNo IPR availablePANTHERPTHR22957TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEINcoord: 12..69
NoneNo IPR availableTMHMMTMhelixcoord: 15..37
IPR035969Rab-GTPase-TBC domain superfamilySUPERFAMILY47923Ypt/Rab-GAP domain of gyp1pcoord: 2..70

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84792contigH-elongata_contig84792:1831..2043 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84792.16076.1mRNA_H-elongata_contig84792.16076.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig84792 1831..2043 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig84792.16076.1 ID=prot_H-elongata_contig84792.16076.1|Name=mRNA_H-elongata_contig84792.16076.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
YVVDSLTDKYCHKLSAQILAFNLTPAMYATQWFLTAFTQRFPYDFVTRVW
DIFLLEDWKIFYRVCLALFK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000195Rab-GTPase-TBC_dom
IPR035969Rab-GTPase_TBC_sf