mRNA_H-elongata_contig84792.16075.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84792.16075.1
Unique NamemRNA_H-elongata_contig84792.16075.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig84792.16075.1 vs. uniprot
Match: D7G5V3_ECTSI (GTPase activating protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5V3_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 1.390e-19
Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    1 VQYCQGINYICALFLLYMPEENAFWLLVASMNRELAPLRELFLPGMVK 144
            VQYCQG+NYI +LFLLYMPEENAFW+LVA+MNR  APLRELFLPGM+K
Sbjct:  125 VQYCQGVNYITSLFLLYMPEENAFWMLVATMNRPCAPLRELFLPGMLK 172
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BLAST of mRNA_H-elongata_contig84792.16075.1 vs. uniprot
Match: A0A6H5L2H2_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H2_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.430e-19
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    1 VQYCQGINYICALFLLYMPEENAFWLLVASMNRELAPLRELFLPGMVK 144
            VQYCQGINYI +LFLLYMPEENAFW+LVASMNR  APLRELFLPGM+K
Sbjct:  478 VQYCQGINYITSLFLLYMPEENAFWMLVASMNRPCAPLRELFLPGMLK 525
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BLAST of mRNA_H-elongata_contig84792.16075.1 vs. uniprot
Match: A0A835YV67_9STRA (Rab-GTPase-TBC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV67_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.310e-13
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:   16 GINYICALFLLYMPEENAFWLLVASMNRELAPLRELFLPGMVK 144
            GINYI ALFLLYMPEE AFW+LV  M+R  APLRELFLPGM+K
Sbjct:  466 GINYIAALFLLYMPEEEAFWMLVCVMHRPQAPLRELFLPGMLK 508
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BLAST of mRNA_H-elongata_contig84792.16075.1 vs. uniprot
Match: A0A7S1G1I4_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G1I4_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.520e-9
Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    7 YCQGINYICALFLLYMPEENAFWLLVASMNRELAPLRELFLPGMVK 144
            YCQG+N++ A+FL+YM EE+AFW+LV  MN E   LREL+  GM+K
Sbjct:  252 YCQGMNFVTAMFLMYMSEEDAFWMLVHVMNFEPCKLRELYTVGMIK 297
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BLAST of mRNA_H-elongata_contig84792.16075.1 vs. uniprot
Match: B8BT08_THAPS (Rab-GAP TBC domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BT08_THAPS)

HSP 1 Score: 59.7 bits (143), Expect = 3.050e-9
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 VQYCQGINYICALFLLYMPEENAFWLLVASMNRELAPLRELFLPGM 138
            V YCQG+N+I A+FL ++PEE AFW+ VA MN E   +RELFL  M
Sbjct:   57 VGYCQGMNFIAAMFLTFLPEEEAFWMFVAVMNEEPYEMRELFLENM 102
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BLAST of mRNA_H-elongata_contig84792.16075.1 vs. uniprot
Match: A0A0P1B616_PLAHL (Plant adhesion molecule 1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B616_PLAHL)

HSP 1 Score: 57.4 bits (137), Expect = 2.490e-8
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 VQYCQGINYICALFLLYMPEENAFWLLVASMNRELAPLRELFLPGMVKV 147
            V YCQG+ +I A+FL YMPE+ AFWLLVA +N +   L +L+ P M KV
Sbjct:  185 VGYCQGMGFISAMFLCYMPEQQAFWLLVACLNHKRYGLADLYRPRMPKV 233
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BLAST of mRNA_H-elongata_contig84792.16075.1 vs. uniprot
Match: A0A1V9ZMJ4_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZMJ4_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.550e-8
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 VQYCQGINYICALFLLYMPEENAFWLLVASMNRELAPLRELFLPGMVKV 147
            V YCQG+ +I ALFL YMPEE  FW LVA +N++   L +L+ PGM +V
Sbjct:  189 VGYCQGMGFISALFLSYMPEEQTFWQLVACLNQKKFGLADLYRPGMPRV 237
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BLAST of mRNA_H-elongata_contig84792.16075.1 vs. uniprot
Match: A0A8J5IBD6_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IBD6_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.520e-8
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 VQYCQGINYICALFLLYMPEENAFWLLVASMNRELAPLRELFLPGMVKV 147
            V YCQG+ ++ A+FL YMPE+ AFWLLVA +N +   L +L+ P M KV
Sbjct:  149 VGYCQGMGFLSAMFLCYMPEQQAFWLLVACLNHKRYGLADLYRPRMPKV 197
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BLAST of mRNA_H-elongata_contig84792.16075.1 vs. uniprot
Match: H3GE06_PHYRM (Rab-GAP TBC domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=H3GE06_PHYRM)

HSP 1 Score: 56.6 bits (135), Expect = 4.660e-8
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 VQYCQGINYICALFLLYMPEENAFWLLVASMNRELAPLRELFLPGMVKV 147
            V YCQG+ ++ A+FL YMPE+ AFWLLVA +N +   L +L+ P M KV
Sbjct:  198 VGYCQGMGFLSAMFLCYMPEQQAFWLLVACLNHKRYGLADLYRPRMPKV 246
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BLAST of mRNA_H-elongata_contig84792.16075.1 vs. uniprot
Match: A0A225W6Z9_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W6Z9_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.670e-8
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 VQYCQGINYICALFLLYMPEENAFWLLVASMNRELAPLRELFLPGMVKV 147
            V YCQG+ ++ A+FL YMPE+ AFWLLVA +N +   L +L+ P M KV
Sbjct:  198 VGYCQGMGFLSAMFLCYMPEQQAFWLLVACLNHKRYGLADLYRPRMPKV 246
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84792.16075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5V3_ECTSI1.390e-1983.33GTPase activating protein n=1 Tax=Ectocarpus silic... [more]
A0A6H5L2H2_9PHAE1.430e-1987.50Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A835YV67_9STRA3.310e-1379.07Rab-GTPase-TBC domain-containing protein n=1 Tax=T... [more]
A0A7S1G1I4_9STRA1.520e-958.70Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
B8BT08_THAPS3.050e-958.70Rab-GAP TBC domain-containing protein n=1 Tax=Thal... [more]
A0A0P1B616_PLAHL2.490e-855.10Plant adhesion molecule 1 n=1 Tax=Plasmopara halst... [more]
A0A1V9ZMJ4_9STRA2.550e-855.10Rab-GAP TBC domain-containing protein n=1 Tax=Achl... [more]
A0A8J5IBD6_9STRA4.520e-853.06Rab-GAP TBC domain-containing protein n=1 Tax=Phyt... [more]
H3GE06_PHYRM4.660e-853.06Rab-GAP TBC domain-containing protein n=6 Tax=Phyt... [more]
A0A225W6Z9_9STRA4.670e-853.06Rab-GAP TBC domain-containing protein n=1 Tax=Phyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84792contigH-elongata_contig84792:699..845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue1.5e-15
Seed eggNOG ortholog2880.D7G5V3
KEGG koko:K19944,ko:K20133
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsCOG5210@1,KOG1102@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931251.3934011-CDS-H-elongata_contig84792:698..8451622931251.3934011-CDS-H-elongata_contig84792:698..845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84792 699..845 +
1691679760.1966648-CDS-H-elongata_contig84792:698..8451691679760.1966648-CDS-H-elongata_contig84792:698..845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84792 699..845 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84792.16075.1prot_H-elongata_contig84792.16075.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84792 699..845 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84792.16075.1

>prot_H-elongata_contig84792.16075.1 ID=prot_H-elongata_contig84792.16075.1|Name=mRNA_H-elongata_contig84792.16075.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
VQYCQGINYICALFLLYMPEENAFWLLVASMNRELAPLRELFLPGMVKV
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mRNA from alignment at H-elongata_contig84792:699..845+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84792.16075.1 ID=mRNA_H-elongata_contig84792.16075.1|Name=mRNA_H-elongata_contig84792.16075.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=147bp|location=Sequence derived from alignment at H-elongata_contig84792:699..845+ (Himanthalia elongata Himel1 dioecious)
GTGCAATACTGCCAGGGCATCAACTACATCTGCGCGCTCTTCCTCCTCTA
CATGCCTGAGGAGAACGCCTTCTGGTTGCTCGTGGCCAGCATGAATCGCG
AGCTGGCGCCGCTGAGGGAACTCTTCCTTCCCGGCATGGTCAAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig84792:699..845+

>mRNA_H-elongata_contig84792.16075.1 ID=mRNA_H-elongata_contig84792.16075.1|Name=mRNA_H-elongata_contig84792.16075.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig84792:699..845+ (Himanthalia elongata Himel1 dioecious)
GTGCAATACTGCCAGGGCATCAACTACATCTGCGCGCTCTTCCTCCTCTA
CATGCCTGAGGAGAACGCCTTCTGGTTGCTCGTGGCCAGCATGAATCGCG
AGCTGGCGCCGCTGAGGGAACTCTTCCTTCCCGGCATGGTCAAGGTAGTG
CAATACTGCCAGGGCATCAACTACATCTGCGCGCTCTTCCTCCTCTACAT
GCCTGAGGAGAACGCCTTCTGGTTGCTCGTGGCCAGCATGAATCGCGAGC
TGGCGCCGCTGAGGGAACTCTTCCTTCCCGGCATGGTCAAGGTA
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