mRNA_H-elongata_contig84761.16073.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig84761.16073.1 vs. uniprot
Match: A0A6H5L581_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L581_9PHAE) HSP 1 Score: 443 bits (1140), Expect = 1.270e-141 Identity = 273/460 (59.35%), Postives = 300/460 (65.22%), Query Frame = 1
Query: 1 SQGPVAELIAAGKVAMVAGDRSVASQRLQQATKVAPENPKAWRALADFLETGNDNKALAEALKACVDIAESKGNFGRSRPVRLRLSEVREAAGDRRGALAALKDFTLNPKAMMATTAPPVPSAGPKVSVAARAAAAAAKKD------------AEVVRDAENSVMKDRSTRLFMEINASL------------------------------------------------------------------------------RMEALSEHCARLDEPGDAAGRRRAAVAVAKSLAASNAEAPWVEAQLRELL--GGSPAAREGALLAIHAMCEVGGPGAEPSVVSLLPLVLVACGAQAASVRTAAADAGAAVARALNPFAVKVVLPSLRAAVESDTWRVKAGALEVMAIMAESSPAQVAQALPEIVPVVSHQVWDTKKEVQQASKHALLAACACIGNPDIEPLV 1104
SQ V L+A K A+ AGDR+ AS +L +ATK+AP+NPKAWRALADFLETGNDNK LAEAL CVDIAESKGN+GRSRP+RLRLSEVREAAGDRRGALAALK FT NP AM + A+AA K AE VRD EN+ MKDRSTRLFME+NA L R+++L+EHC L E GDA+ RRRAAVAVA+S+AASNAEAPWVEAQLRE L G +PAAREGALLAIHAMCE+ GPG EP VV+LLPLVL A GAQAA VR AAADAGAAVAR LNP AV+V LP + AV SDTWR+KAGALEVMA+MAESSP QVA ALPEIVPVVSHQVWDTKKEVQ ASKHALLAACACIGNPDIEPLV
Sbjct: 14 SQPTVGSLLAGAKAAVAAGDRTAASHQLHEATKLAPDNPKAWRALADFLETGNDNKQLAEALSKCVDIAESKGNYGRSRPLRLRLSEVREAAGDRRGALAALKAFTSNPAAMSXXXXXXXXXXXXXXXXVDKKNASAAAKXXXXXXTDXXXXXAEAVRDTENAAMKDRSTRLFMELNADLVPACAPAPPPAPLRTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGPKLTAWVRNGVKASASSMMSAEEIAALGDGERLQSLAEHCGCLGEAGDASARRRAAVAVARSIAASNAEAPWVEAQLREFLPEGNAPAAREGALLAIHAMCELAGPGGEPYVVALLPLVLQANGAQAAQVRAAAADAGAAVARTLNPHAVRVALPMITEAVASDTWRIKAGALEVMAVMAESSPQQVALALPEIVPVVSHQVWDTKKEVQAASKHALLAACACIGNPDIEPLV 473
BLAST of mRNA_H-elongata_contig84761.16073.1 vs. uniprot
Match: A0A836CGS6_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGS6_9STRA) HSP 1 Score: 147 bits (372), Expect = 2.340e-35 Identity = 98/211 (46.45%), Postives = 124/211 (58.77%), Query Frame = 1
Query: 499 SLRMEALSEHCARLDEPGDAAGRRRAAVAVAKSLAASNAEAPWVEAQLRELLG--GSPAAREGALLAIHAMCEVGGPGAEPSVVSLLPLVLVACGAQAASVRTAAADAGAAVARALNPFAVKVVLPSLRAAVESDTWRVKA-------GALEVMAIMAESSPAQVAQALPEIVPVVSHQVWDTKKEVQQASKHALLAACACIGNPDIEPLV 1104
S R+E LS C L GRRRAAVA+A+++AAS+AEAPWVEAQL L +P AREGALLA+ A ++ AEP + +LLP L A A +VR AA DAG A+ RAL+P A+++ LPS+ ++S WR+K G+L + VWDT ++VQ ASKHALLAACACI NPDIEPLV
Sbjct: 4 SERLERLSTLCLMLSGEETGEGRRRAAVAIAEAIAASSAEAPWVEAQLAGFLADASAPTAREGALLAVQAQSQLARHAAEPFLAALLPATLAAHADAAPAVRHAAVDAGQALVRALSPHALRLALPSVLEGMDSREWRIKVRRYGVDVGSLHTLCAXXXXXXXXXXXXXXXXXXXXXX-VWDTHRQVQAASKHALLAACACIANPDIEPLV 213
BLAST of mRNA_H-elongata_contig84761.16073.1 vs. uniprot
Match: K0SN41_THAOC (4Fe-4S ferredoxin-type domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SN41_THAOC) HSP 1 Score: 116 bits (290), Expect = 7.330e-25 Identity = 65/146 (44.52%), Postives = 98/146 (67.12%), Query Frame = 1
Query: 670 AREGALLAIHAMCEVGGPGAEPSVVSLLPLVLVACGAQAASVRTAAADAGAAVARALNPFAVKV-VLPSLRAAVESDTWRVKAGALEVMAIMAESSPAQVAQALPEIVPVVSHQVWDTKKEVQQASKHALLAACACIGNPDIEPLV 1104
AREGALL + A+ E+G EP VV +L L CG+ ++S+R AA+DA A+ NP A+ + V+P L A++S WRVK+ ALE ++ +A +P QV++ LP+I+P+V+ Q+WDTK +V +A+ ALL+ C NPDI+P +
Sbjct: 216 AREGALLLLRALSELGLKSVEPFVVPMLAAALDECGSSSSSLREAASDASVAIITLANPLAMPMLVIPVLFEALQSPEWRVKSTALERLSQVAADAPRQVSKMLPQIIPIVTAQIWDTKPQVTKAANQALLSVCETNDNPDIKPAI 361
BLAST of mRNA_H-elongata_contig84761.16073.1 vs. uniprot
Match: B8C3P2_THAPS (TOG domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3P2_THAPS) HSP 1 Score: 113 bits (283), Expect = 6.490e-24 Identity = 65/146 (44.52%), Postives = 93/146 (63.70%), Query Frame = 1
Query: 670 AREGALLAIHAMCEVGGPGAEPSVVSLLPLVLVACGAQAASVRTAAADAGAAVARALNPFAVK-VVLPSLRAAVESDTWRVKAGALEVMAIMAESSPAQVAQALPEIVPVVSHQVWDTKKEVQQASKHALLAACACIGNPDIEPLV 1104
AREGALL I A CE+G EP VV L+ L CG+ ++SVR AA DA A+ N A+ +++P L A+ S WRVKA AL+ + ++ +P QV++ LP++VP V+ Q+WDTK +V +A+ ALLA C NPD++P +
Sbjct: 227 AREGALLLIRAFCELGMKSVEPYVVPLMAAALDECGSSSSSVREAAEDASVAIVMIANILAMPALIVPVLFEALRSPEWRVKAAALDRLCQVSTKAPRQVSKMLPQVVPTVTAQIWDTKPQVTKAALAALLAVCQTNDNPDVQPAI 372
BLAST of mRNA_H-elongata_contig84761.16073.1 vs. uniprot
Match: A0A7S3PWC4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PWC4_9STRA) HSP 1 Score: 110 bits (274), Expect = 8.980e-23 Identity = 66/148 (44.59%), Postives = 91/148 (61.49%), Query Frame = 1
Query: 664 PAAREGALLAIHAMCEVGGPGAEPSVVSLLPLVLVACGAQAASVRTAAADAGAAVARALNPFAVK-VVLPSLRAAVESDTWRVKAGALEVMAIMAESSPAQVAQALPEIVPVVSHQVWDTKKEVQQASKHALLAACACIGNPDIEPLV 1104
P AREG LL + A+ E+ G +EP VV LL L C + ++ VR AA D + LN A+ +V P L A++S WRVKA A+E ++ AE P Q+++ LP+IVPV++ QVWDTK +V +A+K LLA C NPD+ P V
Sbjct: 196 PEAREGCLLILRALAEIVGKASEPIVVPLLAAALEECSSSSSFVREAAEDTAKIIISILNGHALPALVCPVLFEALQSPEWRVKAAAMEKLSECAELHPRQISRMLPQIVPVITSQVWDTKPQVTKAAKDCLLACCMTNINPDVAPAV 343
BLAST of mRNA_H-elongata_contig84761.16073.1 vs. uniprot
Match: A0A7S1VSC1_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VSC1_9STRA) HSP 1 Score: 109 bits (272), Expect = 1.680e-22 Identity = 66/147 (44.90%), Postives = 90/147 (61.22%), Query Frame = 1
Query: 670 AREGALLAIHAMCEVGGPGAEPSVVS-LLPLVLVACGAQAASVRTAAADAGAAVARALNPFAV-KVVLPSLRAAVESDTWRVKAGALEVMAIMAESSPAQVAQALPEIVPVVSHQVWDTKKEVQQASKHALLAACACIGNPDIEPLV 1104
AREG+LL I A+CE G AEP VV L L CG+ ++SVR AA D +A+ NP+A K++ P L ++ S WRVK ALE ++ A ++P QV LP+++P V+ QVWDTK +V + + LLA C GNPDI P +
Sbjct: 201 AREGSLLIIRALCETVGKKAEPYVVGGFLAAALDECGSSSSSVREAAEDTASALVTLANPWAFPKLICPLLIQSLTSTEWRVKYNALERLSQCAATAPKQVCSLLPDLIPRVTDQVWDTKVQVSKGANSCLLAMCGTCGNPDISPAI 347
BLAST of mRNA_H-elongata_contig84761.16073.1 vs. uniprot
Match: F0YQU4_AURAN (TOG domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQU4_AURAN) HSP 1 Score: 99.4 bits (246), Expect = 4.200e-20 Identity = 56/146 (38.36%), Postives = 87/146 (59.59%), Query Frame = 1
Query: 667 AAREGALLAIHAMCEVGGPGAEPSVVSLLPLVLVACGAQAASVRTAAADAGAAVARALNPFAVKVVLPSLRAAVESDTWRVKAGALEVMAIMAESSPAQVAQALPEIVPVVSHQVWDTKKEVQQASKHALLAACACIGNPDIEPLV 1104
AAREGA+ +H + + G AEP + +LP ++ + V A A +A+NP+A +LP L + + +W+ K G L+++ +A ++P QV Q LPEIVP V+ +WDTK EV+QA+K +L C I NPD++P+V
Sbjct: 62 AAREGAVFVVHELHKALGLHAEPYFMLVLPALVERYDDKVKGVAAAVDACLMAFFQAVNPYAAATLLPHLFTGMSTISWKTKVGCLKLLGALAHTAPTQVGQLLPEIVPKVTENMWDTKPEVKQAAKSSLGECCTVIHNPDVQPIV 207
BLAST of mRNA_H-elongata_contig84761.16073.1 vs. uniprot
Match: A0A7S3ZV50_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZV50_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 7.040e-20 Identity = 56/146 (38.36%), Postives = 89/146 (60.96%), Query Frame = 1
Query: 667 AAREGALLAIHAMCEVGGPGAEPSVVSLLPLVLVACGAQAASVRTAAADAGAAVARALNPFAVKVVLPSLRAAVESDTWRVKAGALEVMAIMAESSPAQVAQALPEIVPVVSHQVWDTKKEVQQASKHALLAACACIGNPDIEPLV 1104
AAREGA+L HA+ G EP ++ +LP ++ + +V A +A +A+NP+A +LP L A + + +W+ K G L+++ +A ++P Q+ Q LPE+VP V+ +WDTK EV+QA+K L C I NPD++P+V
Sbjct: 62 AAREGAVLVCHALHTKLGLHFEPYMLLVLPALIERFDDKVKTVANAVDACLSAFVQAVNPYAAATLLPFLFAGMGTISWKTKVGCLKLLGTLAHTAPTQIGQLLPEVVPKVTENMWDTKPEVKQAAKACLGECCTVIHNPDVQPIV 207
BLAST of mRNA_H-elongata_contig84761.16073.1 vs. uniprot
Match: F0XY24_AURAN (TOG domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XY24_AURAN) HSP 1 Score: 99.0 bits (245), Expect = 9.660e-20 Identity = 55/146 (37.67%), Postives = 87/146 (59.59%), Query Frame = 1
Query: 667 AAREGALLAIHAMCEVGGPGAEPSVVSLLPLVLVACGAQAASVRTAAADAGAAVARALNPFAVKVVLPSLRAAVESDTWRVKAGALEVMAIMAESSPAQVAQALPEIVPVVSHQVWDTKKEVQQASKHALLAACACIGNPDIEPLV 1104
AAREGA+ +H + + G +EP + +LP ++ + V A A +A+NP+A +LP L + + +W+ K G L+++ +A ++P QV Q LPEIVP V+ +WDTK EV+QA+K +L C I NPD++P+V
Sbjct: 62 AAREGAVFVVHELHKALGLHSEPYFMLMLPALIERYDDKVKGVAAAVDACLMAFFQAVNPYAAATLLPHLFTGMSTISWKTKVGCLKLLGALAHTAPTQVGQLLPEIVPKVTENMWDTKPEVKQAAKSSLGECCTVIHNPDVQPIV 207
BLAST of mRNA_H-elongata_contig84761.16073.1 vs. uniprot
Match: UPI0014467253 (Elongation factor 3 n=1 Tax=Daldinia childiae TaxID=326645 RepID=UPI0014467253) HSP 1 Score: 97.1 bits (240), Expect = 1.190e-19 Identity = 62/149 (41.61%), Postives = 89/149 (59.73%), Query Frame = 1
Query: 667 AAREGALLAIHAMCEVG--GPGAEPSVVSLLPLVLVACGAQAASVRTAAADAGAAVARALNPFAVKVVLPSL-RAAVESDTWRVKAGALEVMAIMAESSPAQVAQALPEIVPVVSHQVWDTKKEVQQASKHALLAACACIGNPDIEPLV 1104
AARE A A+ A+ + P EP +V LLPL L A G + V+ AA A A+ A+NP AVK VLP + ++ +ES W K AL+ + I+ +SPAQ+A +PE++PV+S +WDTKKEV++ + + C I N DIE +
Sbjct: 69 AAREKAANAVQAIAQHSEIAPNVEPYLVLLLPLTLAAIGDKITGVKNAAIAATTAIIEAVNPNAVKAVLPVIVKSILESQKWPEKITALDCIDILVRTSPAQLAFRVPELIPVISESMWDTKKEVKERAYKTMEKICELIVNKDIERFI 217 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84761.16073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig84761.16073.1 >prot_H-elongata_contig84761.16073.1 ID=prot_H-elongata_contig84761.16073.1|Name=mRNA_H-elongata_contig84761.16073.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=368bp SQGPVAELIAAGKVAMVAGDRSVASQRLQQATKVAPENPKAWRALADFLEback to top mRNA from alignment at H-elongata_contig84761:187..2491+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig84761.16073.1 ID=mRNA_H-elongata_contig84761.16073.1|Name=mRNA_H-elongata_contig84761.16073.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2305bp|location=Sequence derived from alignment at H-elongata_contig84761:187..2491+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig84761:187..2491+ >mRNA_H-elongata_contig84761.16073.1 ID=mRNA_H-elongata_contig84761.16073.1|Name=mRNA_H-elongata_contig84761.16073.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2208bp|location=Sequence derived from alignment at H-elongata_contig84761:187..2491+ (Himanthalia elongata Himel1 dioecious)back to top |