mRNA_H-elongata_contig12092.1607.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig12092.1607.1 vs. uniprot
Match: A0A6H5L3P9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3P9_9PHAE) HSP 1 Score: 120 bits (300), Expect = 7.490e-30 Identity = 62/126 (49.21%), Postives = 84/126 (66.67%), Query Frame = 1
Query: 1 RDATKAELRHHLKTKLGFERDSVVYMVPQSLFKLRPAFDLVLRDILQMFTDQAYIVLIEGRRKRWKEELWHRLQTNHADTLCLKVRMLPRTSAGAEFHSLLASADVLLHPFPFGGSKTAADGLALG 378
R+ ++ LR LK + G ++SVVYM QSLFKL P FDL ++ +L+ + ++V GRR++W RL + D L +V +PRT +GA F SLLASADV+LHPFPFGGSKT+AD LA+G
Sbjct: 226 RERARSALRAELKNRFGIGQNSVVYMCAQSLFKLHPDFDLAVKGVLEA-SGSNHLVFTAGRRQQWTSIFHARLNSTLGDDLMTRVFFVPRTVSGAAFSSLLASADVMLHPFPFGGSKTSADALAVG 350
BLAST of mRNA_H-elongata_contig12092.1607.1 vs. uniprot
Match: D7FK41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK41_ECTSI) HSP 1 Score: 120 bits (300), Expect = 8.300e-30 Identity = 61/126 (48.41%), Postives = 86/126 (68.25%), Query Frame = 1
Query: 1 RDATKAELRHHLKTKLGFERDSVVYMVPQSLFKLRPAFDLVLRDILQMFTDQAYIVLIEGRRKRWKEELWHRLQTNHADTLCLKVRMLPRTSAGAEFHSLLASADVLLHPFPFGGSKTAADGLALG 378
R+ ++ LR LK ++G +++SVVYM QSLFKL P FDL ++ +L+ + ++V GRR++W RL + D + +V +PRT +GA F SLLASADV+LHPFPFGGSKT+AD LA+G
Sbjct: 221 RERARSVLRAELKNRIGIDQNSVVYMCAQSLFKLHPDFDLAVKGVLEA-SGSNHLVFTAGRRQQWTSIFQARLTSTLGDDVMTRVFFVPRTVSGAAFSSLLASADVVLHPFPFGGSKTSADALAVG 345
BLAST of mRNA_H-elongata_contig12092.1607.1 vs. uniprot
Match: D7FUH1_ECTSI (Putative methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH1_ECTSI) HSP 1 Score: 118 bits (296), Expect = 2.440e-28 Identity = 65/114 (57.02%), Postives = 77/114 (67.54%), Query Frame = 1
Query: 85 QSLFKLRPAFDLVLRDILQMFTD----------------QAYIVLIEGRRKRWKEELWHRLQTNHADTLCLKVRMLPRTSAGAEFHSLLASADVLLHPFPFGGSKTAADGLALG 378
QSLFKL+P FDLVLRDIL + +AY+VL EGRRK W E W RL ++ + L +V++LPR SAG EF + LASADV+LHPFPFGGSKTAADGLALG
Sbjct: 613 QSLFKLKPDFDLVLRDILLAVNNNQNNGQMPNGEKENKNKAYLVLTEGRRKLWTEAFWRRLSSSVPEVLP-QVKILPRMSAGKEFRTFLASADVILHPFPFGGSKTAADGLALG 725
BLAST of mRNA_H-elongata_contig12092.1607.1 vs. uniprot
Match: A0A835YUZ8_9STRA (Glyco_transf_41 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUZ8_9STRA) HSP 1 Score: 100 bits (249), Expect = 5.200e-22 Identity = 54/125 (43.20%), Postives = 78/125 (62.40%), Query Frame = 1
Query: 7 ATKAELRHHLKTKLGFERDSVVYMVPQSLFKLRPAFDLVLRDILQMFTDQAY-IVLIEGRRKRWKEELWHRLQTNHADTLCLKVRMLPRTSAGAEFHSLLASADVLLHPFPFGGSKTAADGLALG 378
A K EL K +LG E DSV++M Q++FK P FD + +L+ DQ + +VL EG+RK W + RL L +V ++ RT++G+++ L+A ADVLLHPFPFGGS+T+ DG +G
Sbjct: 637 ARKRELVLSTKAQLGMEPDSVLFMSAQAVFKYHPLFDDAIAQLLRR--DQRFHVVLQEGQRKTWTQVYMGRLSQTLGPELMRRVHLVTRTNSGSDYLRLIAGADVLLHPFPFGGSRTSTDGFQVG 759
BLAST of mRNA_H-elongata_contig12092.1607.1 vs. uniprot
Match: A0A3R7Y9X5_9STRA (Glyco_transf_41 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7Y9X5_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 1.200e-20 Identity = 54/118 (45.76%), Postives = 72/118 (61.02%), Query Frame = 1
Query: 28 HHLKTKLGFERDSVVYMVPQSLFKLRPAFDLVLRDILQMFTDQAYIVLIEGRRKRWKEELWHRLQ-TNHADTLCLKVRMLPRTSAGAEFHSLLASADVLLHPFPFGGSKTAADGLALG 378
HHL E + +YM PQS++KL P FD VL +IL+ Q ++VL+E R +W +L RLQ T ++ + +V PR F LL+ ADV+LHPFPFGGSKT+AD L LG
Sbjct: 65 HHL------EDEWTIYMCPQSVYKLVPQFDRVLFEILRQ-DPQGHVVLLEARYPQWTRQLRTRLQQTINSTEMWNRVHFRPRVGGSDAFLKLLSVADVVLHPFPFGGSKTSADALLLG 175
BLAST of mRNA_H-elongata_contig12092.1607.1 vs. uniprot
Match: A0A418FAZ3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FAZ3_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 3.620e-20 Identity = 54/118 (45.76%), Postives = 72/118 (61.02%), Query Frame = 1
Query: 28 HHLKTKLGFERDSVVYMVPQSLFKLRPAFDLVLRDILQMFTDQAYIVLIEGRRKRWKEELWHRLQ-TNHADTLCLKVRMLPRTSAGAEFHSLLASADVLLHPFPFGGSKTAADGLALG 378
HHL E + +YM PQS++KL P FD VL +IL+ Q ++VL+E R +W +L RLQ T ++ + +V PR F LL+ ADV+LHPFPFGGSKT+AD L LG
Sbjct: 6 HHL------EDEWTIYMCPQSVYKLVPQFDRVLFEILRQ-DPQGHVVLLEARYPQWTRQLRTRLQQTINSTEMWNRVHFRPRVGGSDAFLKLLSVADVVLHPFPFGGSKTSADALLLG 116
BLAST of mRNA_H-elongata_contig12092.1607.1 vs. uniprot
Match: A0A7S3K5W7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K5W7_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 5.450e-20 Identity = 50/102 (49.02%), Postives = 69/102 (67.65%), Query Frame = 1
Query: 76 MVPQSLFKLRPAFDLVLRDILQMFTDQAYIVLIEGRRKRWKEELWHRLQTNHADTLCL-KVRMLPRTSAGAEFHSLLASADVLLHPFPFGGSKTAADGLALG 378
+ PQSLFKL P FD ++R IL+ T +A ++ +GRR+RW L RL+ D L ++ LPR G+ F L+A ADV+LHPFPFGGS+T++DGLA+G
Sbjct: 651 LCPQSLFKLHPEFDTLIRKILEA-TSEAKVLFTQGRRERWTAVLEARLRNALGDQLYHERLLFLPRQPPGSAFMRLVALADVMLHPFPFGGSRTSSDGLAVG 751
BLAST of mRNA_H-elongata_contig12092.1607.1 vs. uniprot
Match: A0A6S8RMR4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8RMR4_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 7.320e-20 Identity = 52/106 (49.06%), Postives = 69/106 (65.09%), Query Frame = 1
Query: 61 DSVVYMVPQSLFKLRPAFDLVLRDILQMFTDQAYIVLIEGRRKRWKEELWHRLQTNHADTLCLKVRMLPRTSAGAEFHSLLASADVLLHPFPFGGSKTAADGLALG 378
D + + PQS+FKL P FD V+R IL+ T+ A +V GRR+ W + L RL+ + +PR GA+++ LLA ADVLLHPFPFGGS+T+ADGLALG
Sbjct: 690 DWPLLLCPQSVFKLHPHFDTVVRRILEATTN-ARVVFTAGRRQAWTKVLVSRLEKTLGPYKS-RCAFVPRQMPGADYYKLLAVADVLLHPFPFGGSRTSADGLALG 793
BLAST of mRNA_H-elongata_contig12092.1607.1 vs. uniprot
Match: A0A7S3ZLD0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZLD0_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 7.460e-20 Identity = 52/106 (49.06%), Postives = 69/106 (65.09%), Query Frame = 1
Query: 61 DSVVYMVPQSLFKLRPAFDLVLRDILQMFTDQAYIVLIEGRRKRWKEELWHRLQTNHADTLCLKVRMLPRTSAGAEFHSLLASADVLLHPFPFGGSKTAADGLALG 378
D + + PQS+FKL P FD V+R IL+ T+ A +V GRR+ W + L RL+ + +PR GA+++ LLA ADVLLHPFPFGGS+T+ADGLALG
Sbjct: 690 DWPLLLCPQSVFKLHPHFDTVVRRILEATTN-ARVVFTAGRRQAWTKVLVSRLEKTLGPYKS-RCAFVPRQMPGADYYKLLAVADVLLHPFPFGGSRTSADGLALG 793
BLAST of mRNA_H-elongata_contig12092.1607.1 vs. uniprot
Match: A0A397D0C6_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397D0C6_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 1.310e-19 Identity = 54/118 (45.76%), Postives = 72/118 (61.02%), Query Frame = 1
Query: 28 HHLKTKLGFERDSVVYMVPQSLFKLRPAFDLVLRDILQMFTDQAYIVLIEGRRKRWKEELWHRLQ-TNHADTLCLKVRMLPRTSAGAEFHSLLASADVLLHPFPFGGSKTAADGLALG 378
HHL E + +YM PQS++KL P FD VL +IL+ Q ++VL+E R +W +L RLQ T ++ + +V PR F LL+ ADV+LHPFPFGGSKT+AD L LG
Sbjct: 348 HHL------EDEWTIYMCPQSVYKLVPQFDRVLFEILRQ-DPQGHVVLLEARYPQWTRQLRTRLQQTINSTEMWNRVHFRPRVGGSDAFLKLLSVADVVLHPFPFGGSKTSADALLLG 458 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig12092.1607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig12092.1607.1 >prot_H-elongata_contig12092.1607.1 ID=prot_H-elongata_contig12092.1607.1|Name=mRNA_H-elongata_contig12092.1607.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp RDATKAELRHHLKTKLGFERDSVVYMVPQSLFKLRPAFDLVLRDILQMFTback to top mRNA from alignment at H-elongata_contig12092:616..2048- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig12092.1607.1 ID=mRNA_H-elongata_contig12092.1607.1|Name=mRNA_H-elongata_contig12092.1607.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1433bp|location=Sequence derived from alignment at H-elongata_contig12092:616..2048- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig12092:616..2048- >mRNA_H-elongata_contig12092.1607.1 ID=mRNA_H-elongata_contig12092.1607.1|Name=mRNA_H-elongata_contig12092.1607.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig12092:616..2048- (Himanthalia elongata Himel1 dioecious)back to top |