mRNA_H-elongata_contig84649.16068.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84649.16068.1
Unique NamemRNA_H-elongata_contig84649.16068.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig84649.16068.1 vs. uniprot
Match: A0A6H5JXD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXD5_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 6.300e-45
Identity = 74/122 (60.66%), Postives = 93/122 (76.23%), Query Frame = 1 
Query:    1 GARRGDLPYGEDVREFMGTKMAWESLSKDLEALMRYRFFRDKDMVRTRLSSIRKTTLQVDVDILCLETFFVTDDRTEQVVQGCKAVGFRTHRLRLECSPFLRRDFHWEAVDLDNWMKGNAFW 366
            GA+RGDLP   +  E  G+K   +S+ +D++A+ RYR  +D+D++   LSSIRKTT+QVDVDI C ETFFV+DDRTE++VQG KA   R HRLRLE SPFL+RDF W  VDLD+WMKGN FW
Sbjct:  231 GAQRGDLPEEGETIEIWGSKYVLKSVLEDIKAISRYRVSKDRDVLDKPLSSIRKTTVQVDVDIGCTETFFVSDDRTEEIVQGSKAFAVRKHRLRLESSPFLKRDFQWSVVDLDDWMKGNTFW 352
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BLAST of mRNA_H-elongata_contig84649.16068.1 vs. uniprot
Match: D8LFT8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFT8_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 2.560e-21
Identity = 54/122 (44.26%), Postives = 70/122 (57.38%), Query Frame = 1 
Query:    1 GARRGDLPYGEDVREFMGTKMAWESLSKDLEALMRYRFFRDKDMVRTRLSSIRKTTLQVDVDILCLETFFVTDDRTEQVVQGCKAVGFRTHRLRLECSPFLRRDFHWEAVDLDNWMKGNAFW 366
            GA+RGDLP   +  E  G+K   +S+ +D++A+ RYR  +D+  +   LSSIRKTT+QVDVDI C ETFFV+D+RTE+V                              VDLDNWMKGN FW
Sbjct:  248 GAQRGDLPEEGETIEIWGSKYVLKSVLEDIKAISRYRVNKDRAGLDKPLSSIRKTTVQVDVDIGCTETFFVSDNRTEEV------------------------------VDLDNWMKGNTFW 339
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BLAST of mRNA_H-elongata_contig84649.16068.1 vs. uniprot
Match: D7FYL0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL0_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.610e-12
Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:  133 VRTRLSSIRKTTLQVDVDILCLETFFVTDDRTEQVVQGCKAVGFRTHRLRLECSPFLRRDFH----WEAVDLDNWMKGNAF 363
            +R  L+     T QVDVD+ C ETF+V D  T +++QG K    R HR+RLE    + +       W+ +DLD+W+KGNAF
Sbjct:  258 IRNALAGNVTVTFQVDVDLACDETFYVKDKETGEIIQGKKESSGRIHRVRLESCLLMEQAIEQPHIWKVIDLDDWLKGNAF 338
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84649.16068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JXD5_9PHAE6.300e-4560.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFT8_ECTSI2.560e-2144.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FYL0_ECTSI1.610e-1241.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84649contigH-elongata_contig84649:1612..2582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_000970.1
Exons3
Model size369
Cds size369
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84649.16068.1prot_H-elongata_contig84649.16068.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84649 1612..2582 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931250.729606-CDS-H-elongata_contig84649:1611..16561622931250.729606-CDS-H-elongata_contig84649:1611..1656Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84649 1612..1656 -
1691679759.8668063-CDS-H-elongata_contig84649:1611..16561691679759.8668063-CDS-H-elongata_contig84649:1611..1656Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84649 1612..1656 -
1622931250.7460098-CDS-H-elongata_contig84649:1850..19401622931250.7460098-CDS-H-elongata_contig84649:1850..1940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84649 1851..1940 -
1691679759.8846452-CDS-H-elongata_contig84649:1850..19401691679759.8846452-CDS-H-elongata_contig84649:1850..1940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84649 1851..1940 -
1622931250.7612824-CDS-H-elongata_contig84649:2348..25821622931250.7612824-CDS-H-elongata_contig84649:2348..2582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84649 2349..2582 -
1691679759.8963864-CDS-H-elongata_contig84649:2348..25821691679759.8963864-CDS-H-elongata_contig84649:2348..2582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84649 2349..2582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84649.16068.1

>prot_H-elongata_contig84649.16068.1 ID=prot_H-elongata_contig84649.16068.1|Name=mRNA_H-elongata_contig84649.16068.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp
GARRGDLPYGEDVREFMGTKMAWESLSKDLEALMRYRFFRDKDMVRTRLS
SIRKTTLQVDVDILCLETFFVTDDRTEQVVQGCKAVGFRTHRLRLECSPF
LRRDFHWEAVDLDNWMKGNAFW*
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mRNA from alignment at H-elongata_contig84649:1612..2582-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84649.16068.1 ID=mRNA_H-elongata_contig84649.16068.1|Name=mRNA_H-elongata_contig84649.16068.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=971bp|location=Sequence derived from alignment at H-elongata_contig84649:1612..2582- (Himanthalia elongata Himel1 dioecious)
GGCGCGCGGCGGGGAGACCTTCCATACGGAGAAGATGTCCGTGAGTTCAT
GGGCACCAAGATGGCGTGGGAGTCGCTCTCTAAGGATCTAGAGGCCCTGA
TGAGGTACAGGTTTTTCAGAGATAAGGACATGGTCAGGACCCGTCTTTCT
TCGATCCGAAAAACCACGCTGCAAGTGGATGTGGACATTCTTTGCCTCGA
GACTTTCTTCGTCACAGACGACAGGACGGAGCAGGTACTTCTGCGCCATT
TTTGTTTGGCCCGCGGACATACTGACGCCAATAACATCTTGCACCTTCTG
TCGCCGTTGGGTTTGAGTTTGCGTGAGGCGTGTGTCGATCCACACCATCG
CGTGCGTTGAACCTGAGCCTTTGTTCTCTCTCTCTCCCGTGTACAAGCAA
CTAGCTCATGATTGTGGGATCGTATGTATCTCATCATTACCTAGGACGAC
GAAGAATAGACGGTTATATACTGCGGTAAATCAGATGATGACACTGTCAC
TTGCGCTCCGCTTGCATCATGCCTGCCATTGCTGAAAACGCGACTCTGGC
TGCTCCTGCACACTCTTCCCCATAGCGGCTCCGGTAGAGCTTTTAAGTCA
ACTTTCTCCCGTCCCTCTCGACACCGTGTCACTAAACTCCAGGTGGTTCA
GGGGTGCAAGGCGGTGGGCTTTCGCACACATCGTCTCCGCCTCGAGTGTT
CTCCGTTCCTCAGGCGCGACTTTCACTGGGAGGTAGGGAAAAGTCCCGTT
TTTGTCCATTGTCGCCCCTAACTCGGTTGTGCATCACCTTGCGAAGGATG
TGCGCTGCTACAAGTCATGTGAAGATCAACTATATAACTTTAACACAGCT
TTTTACCCTCATATACATCTTCGGCTCAATACTATACGCTCTGCACTTAT
GTTTTCTCTTTTGCCTCTCACCCTAGGCTGTTGATCTCGACAACTGGATG
AAGGGCAACGCATTTTGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig84649:1612..2582-

>mRNA_H-elongata_contig84649.16068.1 ID=mRNA_H-elongata_contig84649.16068.1|Name=mRNA_H-elongata_contig84649.16068.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at H-elongata_contig84649:1612..2582- (Himanthalia elongata Himel1 dioecious)
GGCGCGCGGCGGGGAGACCTTCCATACGGAGAAGATGTCCGTGAGTTCAT
GGGCACCAAGATGGCGTGGGAGTCGCTCTCTAAGGATCTAGAGGCCCTGA
TGAGGTACAGGTTTTTCAGAGATAAGGACATGGTCAGGACCCGTCTTTCT
TCGATCCGAAAAACCACGCTGCAAGTGGATGTGGACATTCTTTGCCTCGA
GACTTTCTTCGTCACAGACGACAGGACGGAGCAGGGCGCGCGGCGGGGAG
ACCTTCCATACGGAGAAGATGTCCGTGAGTTCATGGGCACCAAGATGGCG
TGGGAGTCGCTCTCTAAGGATCTAGAGGCCCTGATGAGGTACAGGTTTTT
CAGAGATAAGGACATGGTCAGGACCCGTCTTTCTTCGATCCGAAAAACCA
CGCTGCAAGTGGATGTGGACATTCTTTGCCTCGAGACTTTCTTCGTCACA
GACGACAGGACGGAGCAGGTGGTTCAGGGGTGCAAGGCGGTGGGCTTTCG
CACACATCGTCTCCGCCTCGAGTGTTCTCCGTTCCTCAGGCGCGACTTTC
ACTGGGAGGTGGTTCAGGGGTGCAAGGCGGTGGGCTTTCGCACACATCGT
CTCCGCCTCGAGTGTTCTCCGTTCCTCAGGCGCGACTTTCACTGGGAGGC
TGTTGATCTCGACAACTGGATGAAGGGCAACGCATTTTGGTAAGCTGTTG
ATCTCGACAACTGGATGAAGGGCAACGCATTTTGGTAA
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