mRNA_H-elongata_contig84511.16062.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84511.16062.1
Unique NamemRNA_H-elongata_contig84511.16062.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig84511.16062.1 vs. uniprot
Match: A0A6H5L258_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L258_9PHAE)

HSP 1 Score: 227 bits (579), Expect = 6.680e-67
Identity = 119/124 (95.97%), Postives = 122/124 (98.39%), Query Frame = 1 
Query:    1 KVLVCAPSNVAVDHLTAKICATGLRVVRLCAKSREAVSTDVDHLSLHCMVRAMDTPEKQDLRKLQLLKDELGELVAADEKRFRRLRSSAEREILQAADVICTTCVGAGDPRLSNVNLRFRQASS 372
            +VLVCAPSNVAVDHLTAKI ATGLRVVRLCAKSREAVSTDVDHLSLH MVRA+DTP+KQDLRKLQLLKDELGELVAADEKRFRRLRSSAEREILQAADVICTTCVGAGDPRLSNVNLRFRQASS
Sbjct:  560 QVLVCAPSNVAVDHLTAKISATGLRVVRLCAKSREAVSTDVDHLSLHVMVRALDTPDKQDLRKLQLLKDELGELVAADEKRFRRLRSSAEREILQAADVICTTCVGAGDPRLSNVNLRFRQASS 683
[Close]
BLAST of mRNA_H-elongata_contig84511.16062.1 vs. uniprot
Match: D7FN00_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN00_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 3.070e-65
Identity = 117/127 (92.13%), Postives = 121/127 (95.28%), Query Frame = 1 
Query:    1 KVLVCAPSNVAVDHLTAKICATGLRVVRLCAKSREAVSTDVDHLSLHCMVRAMDTPEKQDLRKLQLLKDELGELVAADEKRFRRLRSSAEREILQAADVICTTCVGAGDPRLSNVNLRFRQASSEAA 381
            +VLVCAPSNVAVDHLTAKI ATGLRVVRLCAKSREAVSTDVDHLSLH MVRA+DTP+KQDLRKLQLLKDELGELVAADEKRFRRLRSSAEREILQAADVICTTCVGAGDPRLSNVNLRFRQ   + A
Sbjct:  549 QVLVCAPSNVAVDHLTAKISATGLRVVRLCAKSREAVSTDVDHLSLHVMVRALDTPDKQDLRKLQLLKDELGELVAADEKRFRRLRSSAEREILQAADVICTTCVGAGDPRLSNVNLRFRQVLIDEA 675
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BLAST of mRNA_H-elongata_contig84511.16062.1 vs. uniprot
Match: A0A7C8YEN4_OPUST (RNA helicase n=3 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8YEN4_OPUST)

HSP 1 Score: 157 bits (397), Expect = 4.170e-47
Identity = 82/121 (67.77%), Postives = 99/121 (81.82%), Query Frame = 1 
Query:    1 KVLVCAPSNVAVDHLTAKICATGLRVVRLCAKSREAVSTDVDHLSLHCMVRAMDTPEKQDLRKLQLLKDELGELVAADEKRFRRLRSSAEREILQAADVICTTCVGAGDPRLSNVNLRFRQ 363
            +VLVCAPSNVAVD L  KI ATG++VVRLCAKSREAVS+ V+HL+LH  VR +DT EK +L KLQ LKDE GEL ++DEK+++ L+ + EREI Q+ADVIC TCVGAGDPRL+N   RFRQ
Sbjct:   20 QVLVCAPSNVAVDQLAEKISATGMKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKSLKRATEREIAQSADVICCTCVGAGDPRLAN--FRFRQ 138
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BLAST of mRNA_H-elongata_contig84511.16062.1 vs. uniprot
Match: A0A8K1FJJ0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJJ0_PYTOL)

HSP 1 Score: 170 bits (431), Expect = 1.250e-46
Identity = 90/127 (70.87%), Postives = 106/127 (83.46%), Query Frame = 1 
Query:    1 KVLVCAPSNVAVDHLTAKICATGLRVVRLCAKSREAVSTDVDHLSLHCMVRAMDTPEKQDLRKLQLLKDELGELVAADEKRFRRLRSSAEREILQAADVICTTCVGAGDPRLSNVNLRFRQASSEAA 381
            +VLV APSN+AVDHLTAKI ATGL+VVRL AKSREAV++ V+HLSLH MV+++D+P+K DLRKL  LKD+ GEL + DEKRF+ L+  AEREILQAADVICTTCVGAGDPRLSN   RFRQ   + A
Sbjct:  506 QVLVTAPSNIAVDHLTAKISATGLKVVRLAAKSREAVASSVEHLSLHAMVKSLDSPDKADLRKLMQLKDDQGELSSQDEKRFKALKRQAEREILQAADVICTTCVGAGDPRLSN--FRFRQVLIDEA 630
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BLAST of mRNA_H-elongata_contig84511.16062.1 vs. uniprot
Match: H3G5R3_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5R3_PHYRM)

HSP 1 Score: 169 bits (428), Expect = 2.200e-46
Identity = 89/127 (70.08%), Postives = 105/127 (82.68%), Query Frame = 1 
Query:    1 KVLVCAPSNVAVDHLTAKICATGLRVVRLCAKSREAVSTDVDHLSLHCMVRAMDTPEKQDLRKLQLLKDELGELVAADEKRFRRLRSSAEREILQAADVICTTCVGAGDPRLSNVNLRFRQASSEAA 381
            +VLV APSN+AVDHLT KI ATGLRVVRL AKSREAV++ V+HLSLH M++++D+P+K DLRKL  LKD+ GEL + DEKRF+ L+  AEREILQAADVICTTCVGAGDPRLSN   RFRQ   + A
Sbjct:  427 QVLVTAPSNIAVDHLTMKISATGLRVVRLAAKSREAVASSVEHLSLHAMIKSLDSPDKADLRKLMQLKDDQGELSSQDEKRFKSLKRQAEREILQAADVICTTCVGAGDPRLSN--FRFRQVLIDEA 551
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BLAST of mRNA_H-elongata_contig84511.16062.1 vs. uniprot
Match: A0A662XNM8_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XNM8_9STRA)

HSP 1 Score: 169 bits (429), Expect = 2.340e-46
Identity = 89/127 (70.08%), Postives = 105/127 (82.68%), Query Frame = 1 
Query:    1 KVLVCAPSNVAVDHLTAKICATGLRVVRLCAKSREAVSTDVDHLSLHCMVRAMDTPEKQDLRKLQLLKDELGELVAADEKRFRRLRSSAEREILQAADVICTTCVGAGDPRLSNVNLRFRQASSEAA 381
            +VLV APSN+AVDHLT KI ATGLRVVRL AKSREAV++ V+HLSLH M++++D+P+K DLRKL  LKD+ GEL + DEKRF+ L+  AEREILQAADVICTTCVGAGDPRLSN   RFRQ   + A
Sbjct:  525 QVLVTAPSNIAVDHLTTKISATGLRVVRLAAKSREAVASSVEHLSLHAMIKSLDSPDKADLRKLMQLKDDQGELSSQDEKRFKALKRQAEREILQAADVICTTCVGAGDPRLSN--FRFRQVLIDEA 649
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BLAST of mRNA_H-elongata_contig84511.16062.1 vs. uniprot
Match: A0A3R7KMF1_9STRA (Uncharacterized protein n=14 Tax=Phytophthora TaxID=4783 RepID=A0A3R7KMF1_9STRA)

HSP 1 Score: 169 bits (428), Expect = 3.230e-46
Identity = 89/127 (70.08%), Postives = 105/127 (82.68%), Query Frame = 1 
Query:    1 KVLVCAPSNVAVDHLTAKICATGLRVVRLCAKSREAVSTDVDHLSLHCMVRAMDTPEKQDLRKLQLLKDELGELVAADEKRFRRLRSSAEREILQAADVICTTCVGAGDPRLSNVNLRFRQASSEAA 381
            +VLV APSN+AVDHLT KI ATGLRVVRL AKSREAV++ V+HLSLH M++++D+P+K DLRKL  LKD+ GEL + DEKRF+ L+  AEREILQAADVICTTCVGAGDPRLSN   RFRQ   + A
Sbjct:  606 QVLVTAPSNIAVDHLTMKISATGLRVVRLAAKSREAVASSVEHLSLHAMIKSLDSPDKADLRKLMQLKDDQGELSSQDEKRFKSLKRQAEREILQAADVICTTCVGAGDPRLSN--FRFRQVLIDEA 730
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BLAST of mRNA_H-elongata_contig84511.16062.1 vs. uniprot
Match: K3X0E4_GLOUD (AAA domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0E4_GLOUD)

HSP 1 Score: 169 bits (427), Expect = 4.370e-46
Identity = 88/127 (69.29%), Postives = 106/127 (83.46%), Query Frame = 1 
Query:    1 KVLVCAPSNVAVDHLTAKICATGLRVVRLCAKSREAVSTDVDHLSLHCMVRAMDTPEKQDLRKLQLLKDELGELVAADEKRFRRLRSSAEREILQAADVICTTCVGAGDPRLSNVNLRFRQASSEAA 381
            +VLV APSN+AVDHLTAKI ATGL+VVRL AKSREAV++ V+HLSLH M++++D+P+K DLRKL  LKD+ GEL + DEKRF+ L+  AERE+LQAADVICTTCVGAGDPRLSN   RFRQ   + A
Sbjct:  543 QVLVTAPSNIAVDHLTAKISATGLKVVRLAAKSREAVASSVEHLSLHAMIKSLDSPDKADLRKLTQLKDDQGELSSQDEKRFKALKRQAERELLQAADVICTTCVGAGDPRLSN--FRFRQVLIDEA 667
[Close]
BLAST of mRNA_H-elongata_contig84511.16062.1 vs. uniprot
Match: A0A4D8Y1Y1_SALSN (Regulator of nonsense transcripts 1 n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8Y1Y1_SALSN)

HSP 1 Score: 158 bits (399), Expect = 6.180e-46
Identity = 83/121 (68.60%), Postives = 99/121 (81.82%), Query Frame = 1 
Query:    1 KVLVCAPSNVAVDHLTAKICATGLRVVRLCAKSREAVSTDVDHLSLHCMVRAMDTPEKQDLRKLQLLKDELGELVAADEKRFRRLRSSAEREILQAADVICTTCVGAGDPRLSNVNLRFRQ 363
            +VLVCAPSNVAVD L  KI ATGL+VVRLCAKSREAVS+ V+HL+LH  VR +DT EK +L KLQ LKDE GEL ++DEK+++ L+ + EREI Q+ADVIC TCVGAGDPRL+N   RFRQ
Sbjct:   96 RVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLAN--FRFRQ 214
[Close]
BLAST of mRNA_H-elongata_contig84511.16062.1 vs. uniprot
Match: A0A418E558_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418E558_9STRA)

HSP 1 Score: 160 bits (404), Expect = 7.030e-46
Identity = 84/127 (66.14%), Postives = 105/127 (82.68%), Query Frame = 1 
Query:    1 KVLVCAPSNVAVDHLTAKICATGLRVVRLCAKSREAVSTDVDHLSLHCMVRAMDTPEKQDLRKLQLLKDELGELVAADEKRFRRLRSSAEREILQAADVICTTCVGAGDPRLSNVNLRFRQASSEAA 381
            +VLV APSN+AVDHLT KI +TGL+VVRL AKSREAV++ V+HL+LH M++++ +P+K DLRKL  LK++ GEL + DEKRF+ L+ +AEREILQAADVICTTCVGAGDPRLSN   RFRQ   + A
Sbjct:  103 QVLVTAPSNIAVDHLTEKIASTGLKVVRLAAKSREAVTSIVEHLTLHTMIKSLVSPDKADLRKLMQLKEDQGELSSQDEKRFKSLKRNAEREILQAADVICTTCVGAGDPRLSN--FRFRQVLIDEA 227
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84511.16062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L258_9PHAE6.680e-6795.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN00_ECTSI3.070e-6592.13RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A7C8YEN4_OPUST4.170e-4767.77RNA helicase n=3 Tax=Opuntia streptacantha TaxID=3... [more]
A0A8K1FJJ0_PYTOL1.250e-4670.87Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H3G5R3_PHYRM2.200e-4670.08Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A662XNM8_9STRA2.340e-4670.08Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A3R7KMF1_9STRA3.230e-4670.08Uncharacterized protein n=14 Tax=Phytophthora TaxI... [more]
K3X0E4_GLOUD4.370e-4669.29AAA domain-containing protein n=1 Tax=Globisporang... [more]
A0A4D8Y1Y1_SALSN6.180e-4668.60Regulator of nonsense transcripts 1 n=1 Tax=Salvia... [more]
A0A418E558_9STRA7.030e-4666.14Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84511contigH-elongata_contig84511:1000..2315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score225.7
Seed ortholog evalue1.2e-56
Seed eggNOG ortholog2880.D7FN00
Preferred nameUPF1
KEGG koko:K14326
KEGG Pathwayko03013,ko03015,map03013,map03015
KEGG ModuleM00430
GOsGO:0000003,GO:0000166,GO:0000184,GO:0000228,GO:0000288,GO:0000291,GO:0000294,GO:0000723,GO:0000781,GO:0000784,GO:0000785,GO:0000932,GO:0000956,GO:0001101,GO:0001666,GO:0002237,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005694,GO:0005737,GO:0005829,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006325,GO:0006342,GO:0006355,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006449,GO:0006464,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006952,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007154,GO:0007165,GO:0007275,GO:0007548,GO:0007549,GO:0008026,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0008298,GO:0008334,GO:0009048,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009506,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009628,GO:0009648,GO:0009653,GO:0009719,GO:0009725,GO:0009743,GO:0009751,GO:0009753,GO:0009755,GO:0009756,GO:0009790,GO:0009863,GO:0009867,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010182,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010610,GO:0010629,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016246,GO:0016441,GO:0016458,GO:0016462,GO:0016567,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017148,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019725,GO:0019899,GO:0019902,GO:0019903,GO:0022402,GO:0022414,GO:0023052,GO:0030054,GO:0030466,GO:0030538,GO:0030554,GO:0031047,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031503,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032204,GO:0032268,GO:0032269,GO:0032446,GO:0032496,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032870,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033260,GO:0033554,GO:0033993,GO:0034097,GO:0034248,GO:0034249,GO:0034427,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035112,GO:0035145,GO:0035194,GO:0035639,GO:0035690,GO:0035770,GO:0036094,GO:0036211,GO:0036293,GO:0036294,GO:0036464,GO:0040029,GO:0042162,GO:0042221,GO:0042493,GO:0042592,GO:0042623,GO:0042742,GO:0042886,GO:0043021,GO:0043024,GO:0043167,GO:0043168,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043244,GO:0043412,GO:0043487,GO:0043488,GO:0043565,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044530,GO:0044770,GO:0044786,GO:0044877,GO:0045184,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048571,GO:0048598,GO:0048608,GO:0048731,GO:0048806,GO:0048856,GO:0050657,GO:0050658,GO:0050779,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051052,GO:0051128,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0051721,GO:0055044,GO:0060249,GO:0060255,GO:0061013,GO:0061014,GO:0061157,GO:0061158,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0070035,GO:0070478,GO:0070482,GO:0070555,GO:0070647,GO:0070727,GO:0070887,GO:0071025,GO:0071027,GO:0071028,GO:0071030,GO:0071044,GO:0071166,GO:0071216,GO:0071219,GO:0071222,GO:0071229,GO:0071236,GO:0071310,GO:0071322,GO:0071345,GO:0071347,GO:0071395,GO:0071396,GO:0071407,GO:0071426,GO:0071427,GO:0071446,GO:0071453,GO:0071456,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0098542,GO:0098687,GO:0140098,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1901700,GO:1901701,GO:1902679,GO:1903311,GO:1903313,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2000622,GO:2000624,GO:2000815,GO:2001141
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
EggNOG OGsCOG1112@1,KOG1802@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Hectar predicted targeting categoryother localisation
Exons3
Model size384
Cds size384
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84511.16062.1prot_H-elongata_contig84511.16062.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84511 1000..2315 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931250.2473435-CDS-H-elongata_contig84511:999..11701622931250.2473435-CDS-H-elongata_contig84511:999..1170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84511 1000..1170 -
1691679759.6432111-CDS-H-elongata_contig84511:999..11701691679759.6432111-CDS-H-elongata_contig84511:999..1170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84511 1000..1170 -
1622931250.2640789-CDS-H-elongata_contig84511:1657..17591622931250.2640789-CDS-H-elongata_contig84511:1657..1759Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84511 1658..1759 -
1691679759.6555116-CDS-H-elongata_contig84511:1657..17591691679759.6555116-CDS-H-elongata_contig84511:1657..1759Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84511 1658..1759 -
1622931250.2794635-CDS-H-elongata_contig84511:2204..23151622931250.2794635-CDS-H-elongata_contig84511:2204..2315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84511 2205..2315 -
1691679759.6647885-CDS-H-elongata_contig84511:2204..23151691679759.6647885-CDS-H-elongata_contig84511:2204..2315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84511 2205..2315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84511.16062.1

>prot_H-elongata_contig84511.16062.1 ID=prot_H-elongata_contig84511.16062.1|Name=mRNA_H-elongata_contig84511.16062.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp
KVLVCAPSNVAVDHLTAKICATGLRVVRLCAKSREAVSTDVDHLSLHCMV
RAMDTPEKQDLRKLQLLKDELGELVAADEKRFRRLRSSAEREILQAADVI
CTTCVGAGDPRLSNVNLRFRQASSEAA*
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mRNA from alignment at H-elongata_contig84511:1000..2315-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84511.16062.1 ID=mRNA_H-elongata_contig84511.16062.1|Name=mRNA_H-elongata_contig84511.16062.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1316bp|location=Sequence derived from alignment at H-elongata_contig84511:1000..2315- (Himanthalia elongata Himel1 dioecious)
AAGGTGCTGGTCTGCGCACCGTCTAATGTTGCGGTGGACCACCTGACGGC
AAAGATATGCGCCACCGGGCTGAGGGTGGTGCGCCTGTGCGCCAAGAGCA
GGGAGGCAGTGGTAAGTGTTTTGCGTTTTGTTTTTTCTACGGTAGATGAG
CGGGGGGGGGGTAATTTTGCTGTAAACAGCTAGCTGACCGTTTCTTACAC
TCCTAAAATTAAGTTGCTGTTGCTGTTTATGTTGCGACGGCGACGGTGGC
ATCTGCTGCAGGGTGTTCGTTTCCGCCTTGAAAACACCGGAGCCTGCTTG
GGCGGGGAGAATAGGGGGATTGATTGCATACTTTATGTGATTATGACTCA
AATAAAACGAGCGAGCGAGGTAATGTTCTGTACACGATGACACTGCGCGC
CGGGTTTAGGAGGGAGAGATATATTTTCCTCTTTCAATAAAATATAGACA
GCACATAAAACCAACGCAATCACAGAAGAAGAAAAAAACATTAAAAAGTC
ATGATAATAACAAACGCCCTCGCCCCGCTGATCACAACCCAATCAAATCA
TACCAGTCTACGGATGTGGACCATCTGTCCCTGCACTGCATGGTCCGAGC
GATGGACACCCCCGAGAAGCAGGACCTGCGCAAGCTTCAGCTGCTCAAAG
ACGAGCTGGTTAGTGTTTTTTACACCGGCTTCATATATATATATATATAT
ATATATACATACTATATTGCTTTATTGAGTTTTTTCTTCTTTCTTTCACT
AGTTTAGCGATTATTTTCATATTTCTTTTTTGGTGGGGGAGGGAGGTGGC
AAGCCGGCCGGGAAAGGCGGAAAGGGGGGTGGTTTCGATTTTTCCAATAT
CTTCCCGTTGCGTTTCTCTCTCTCTCTCTCATCCACACCCTAAAATCCGT
GAGAGTTTTTTTATTATGGCCAGACGAAGTCGATTCTGCTTTACACGCTA
GACGTGCTGCTGTTTTTTTTGCGCTTTTAGATGCTAGAGGTTTGCCGTAG
AGCTGTGGCGAACGAGTAGGGACCGCGCCCGTTTCAGCACCCACGCCCTA
AAATCTAAAACTAAACACTGCAATGCGTTACATCCTCTAGACCCCCCCCC
CACCGCTGCTTTTCCCGTCGTAAAAACGCCTTTCTATGCTGACAGGGCGA
ACTGGTCGCGGCGGACGAGAAGCGCTTCCGGCGGCTGCGCTCGAGCGCGG
AGCGAGAAATCTTGCAGGCTGCCGACGTTATCTGCACCACCTGCGTCGGG
GCCGGTGATCCCCGCCTGAGCAACGTCAACCTTCGCTTCCGGCAGGCGAG
TTCCGAGGCCGCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig84511:1000..2315-

>mRNA_H-elongata_contig84511.16062.1 ID=mRNA_H-elongata_contig84511.16062.1|Name=mRNA_H-elongata_contig84511.16062.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig84511:1000..2315- (Himanthalia elongata Himel1 dioecious)
AAGGTGCTGGTCTGCGCACCGTCTAATGTTGCGGTGGACCACCTGACGGC
AAAGATATGCGCCACCGGGCTGAGGGTGGTGCGCCTGTGCGCCAAGAGCA
GGGAGGCAGTGAAGGTGCTGGTCTGCGCACCGTCTAATGTTGCGGTGGAC
CACCTGACGGCAAAGATATGCGCCACCGGGCTGAGGGTGGTGCGCCTGTG
CGCCAAGAGCAGGGAGGCAGTGTCTACGGATGTGGACCATCTGTCCCTGC
ACTGCATGGTCCGAGCGATGGACACCCCCGAGAAGCAGGACCTGCGCAAG
CTTCAGCTGCTCAAAGACGAGCTGTCTACGGATGTGGACCATCTGTCCCT
GCACTGCATGGTCCGAGCGATGGACACCCCCGAGAAGCAGGACCTGCGCA
AGCTTCAGCTGCTCAAAGACGAGCTGGGCGAACTGGTCGCGGCGGACGAG
AAGCGCTTCCGGCGGCTGCGCTCGAGCGCGGAGCGAGAAATCTTGCAGGC
TGCCGACGTTATCTGCACCACCTGCGTCGGGGCCGGTGATCCCCGCCTGA
GCAACGTCAACCTTCGCTTCCGGCAGGCGAGTTCCGAGGCCGCTTGAGGC
GAACTGGTCGCGGCGGACGAGAAGCGCTTCCGGCGGCTGCGCTCGAGCGC
GGAGCGAGAAATCTTGCAGGCTGCCGACGTTATCTGCACCACCTGCGTCG
GGGCCGGTGATCCCCGCCTGAGCAACGTCAACCTTCGCTTCCGGCAGGCG
AGTTCCGAGGCCGCTTGA
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