mRNA_H-elongata_contig84477.16060.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84477.16060.1
Unique NamemRNA_H-elongata_contig84477.16060.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84477.16060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84477contigH-elongata_contig84477:561..2376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCAAX amino terminal protease
Ec32 orthologEc-04_006540.1
Exons3
Model size618
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84477.16060.1prot_H-elongata_contig84477.16060.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84477 624..2127 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931250.0290532-UTR-H-elongata_contig84477:560..6231622931250.0290532-UTR-H-elongata_contig84477:560..623Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84477 561..623 +
1691679759.569755-UTR-H-elongata_contig84477:560..6231691679759.569755-UTR-H-elongata_contig84477:560..623Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84477 561..623 +
1622931250.1263678-UTR-H-elongata_contig84477:2127..23761622931250.1263678-UTR-H-elongata_contig84477:2127..2376Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84477 2128..2376 +
1691679759.6117966-UTR-H-elongata_contig84477:2127..23761691679759.6117966-UTR-H-elongata_contig84477:2127..2376Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84477 2128..2376 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931250.0524116-CDS-H-elongata_contig84477:623..6381622931250.0524116-CDS-H-elongata_contig84477:623..638Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84477 624..638 +
1691679759.5799031-CDS-H-elongata_contig84477:623..6381691679759.5799031-CDS-H-elongata_contig84477:623..638Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84477 624..638 +
1622931250.0705447-CDS-H-elongata_contig84477:1148..13011622931250.0705447-CDS-H-elongata_contig84477:1148..1301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84477 1149..1301 +
1691679759.5919328-CDS-H-elongata_contig84477:1148..13011691679759.5919328-CDS-H-elongata_contig84477:1148..1301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84477 1149..1301 +
1622931250.0984006-CDS-H-elongata_contig84477:1989..21271622931250.0984006-CDS-H-elongata_contig84477:1989..2127Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84477 1990..2127 +
1691679759.6027863-CDS-H-elongata_contig84477:1989..21271691679759.6027863-CDS-H-elongata_contig84477:1989..2127Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84477 1990..2127 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84477.16060.1

>prot_H-elongata_contig84477.16060.1 ID=prot_H-elongata_contig84477.16060.1|Name=mRNA_H-elongata_contig84477.16060.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MLAQSMEDGVPFRKWIGIGVHKLGPAVLLPLLLTCCLFLGPLVTMSSMVI
MRIFNEVSPRGQAKPRVHCFPWHLIAKVELSKKVNLDHGIYSVIRNIVVS
R*
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mRNA from alignment at H-elongata_contig84477:561..2376+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84477.16060.1 ID=mRNA_H-elongata_contig84477.16060.1|Name=mRNA_H-elongata_contig84477.16060.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1816bp|location=Sequence derived from alignment at H-elongata_contig84477:561..2376+ (Himanthalia elongata Himel1 dioecious)
CAGATTCGAGCAAGATTTGCCGCAGTTTCCGCCACCACGCTCACGTCTGT
AGTGACTACGCGTATGTTAGCCCAATCGGTGAGATAACCAGAGAGCTTCT
GATAGAGAGGGGTAACATGGAAGATGTTTTTATTTATTTGAGAGGGGATC
GATATCTCAAAATATGTACTGCTAGGTTACCCCGTGACGATGATGGTGTA
TATGGTACACTGTATTTTATTAGTAGTCTACAAGTAATACGACTGGGAAT
GAAAACAACCCCACCCTACCCCAAGTTTTTCGTCAGCACATCCACCACAG
ACGTTGCAAATTGCTTAAAGATATTGTATATATATATATATATATTAGCG
AGATGAAGATCGTTCTAAAATACGCCTAGTGTTGCCTCCCTATCGCTGTT
TGTGTACTTGTACTCGTACTTGTCGTCGCTCGAGCTATTGTCTATTGTCT
ATTGGATATTGCCTTTTGCATACCGTTACTGCATAATACCGAGGGAATCG
AATAGGGACATACTGCATACACCGGCACCTTATCCTCCTTCCCTCTCTCC
CTCCGTTCGACATGCGGCTCACTCTTATCCATCGTCAGATGGAAGATGGT
GTTCCCTTTCGCAAGTGGATCGGTATTGGCGTACACAAACTTGGTCCCGC
AGTTCTGCTCCCTTTGCTGCTTACGTGCTGCCTGTTCCTTGGACCTCTCG
TCACGATGTCATCCATGGTGATCATGCGTATTTTTAATGAGGTGAAAACG
ATGAGTGTAGTAATGACGAGCTTCATTACCCCAACGACGCTCAAAGGAGG
ACGTTTGCTTTCAGCTTTCAGATCGTTTTTCGCTTTTAAACGCCTGAAAT
AATATAATATTAGTGAAAAATGGTGGCCAACCATGATGTGTTGTTAGTGA
AATATTGTACTATTTAAATATGCCTAACTCGCTATCCTCAACGAGCGCAA
TGTGGGCTACCCCAGCAAGCCACTTCTGGCGGTAATATGGCGCGATAAAA
CACTTCGACATGGTTGCATGAAGAGGGCAACTCGCTCAACTTGACTGCAC
CGTGGCATACCTTTCTTCATTACACGTAAAAAATACGAAATTTCCAAATA
ATAGGTACGATGGGTGCATTGCTATCTCTAATATTTGTAATATATATCGC
ATCTAAAGTACTGCGCTGCAGGGACGATATCTTGGTGTGATGTTTCACAT
AGGTCCTACCACTTAACTCGTGAAAACCTTGGACACAGCTGATACGAACT
AGTCCTACCACTTAACTCGTGAAAACGCCAATAGCTCTAAATCAAGAAGC
TAAAAGCACTCGTTAGATTTTTGGGCGGGGATCAAAACACGTCTTCATCT
TCTCCAGAGAAATATTTTGCAGAAAGCTGTTTGATAACCTTGTGTACGAA
CTAACTCTGTTTTGCACGAACTGTGAAAGGTGTCACCTCGTGGACAAGCC
AAGCCGCGGGTTCATTGCTTTCCATGGCATCTGATCGCGAAGGTAGAGCT
GTCGAAAAAGGTCAATCTTGACCACGGCATTTACAGCGTGATACGGAATA
TTGTGGTGAGTCGTTAAAGGGCTACAGCTGTTGATCCACCCTTTGAGCAT
ATCGATAGAACGATATACGATTGACGATTGCTTTAAGATTATTGAAGATG
ACTGTTTCGTTCTGATATTCATCCTTTCCTTCACAAAACAATAGTAGGTA
GGTACTTTAGTAATTTTGATCCGGAGTAGTTTTCAAGGCCGATTGCTAAC
GTAACCAAAACCTTTATTTTCATTGACGAAGTAGGAGGAATTTTGTCATA
CATTTCTAAAGCTCCC
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Coding sequence (CDS) from alignment at H-elongata_contig84477:561..2376+

>mRNA_H-elongata_contig84477.16060.1 ID=mRNA_H-elongata_contig84477.16060.1|Name=mRNA_H-elongata_contig84477.16060.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig84477:561..2376+ (Himanthalia elongata Himel1 dioecious)
ATGTTAGCCCAATCGATGTTAGCCCAATCGATGGAAGATGGTGTTCCCTT
TCGCAAGTGGATCGGTATTGGCGTACACAAACTTGGTCCCGCAGTTCTGC
TCCCTTTGCTGCTTACGTGCTGCCTGTTCCTTGGACCTCTCGTCACGATG
TCATCCATGGTGATCATGCGTATTTTTAATGAGATGGAAGATGGTGTTCC
CTTTCGCAAGTGGATCGGTATTGGCGTACACAAACTTGGTCCCGCAGTTC
TGCTCCCTTTGCTGCTTACGTGCTGCCTGTTCCTTGGACCTCTCGTCACG
ATGTCATCCATGGTGATCATGCGTATTTTTAATGAGGTGTCACCTCGTGG
ACAAGCCAAGCCGCGGGTTCATTGCTTTCCATGGCATCTGATCGCGAAGG
TAGAGCTGTCGAAAAAGGTCAATCTTGACCACGGCATTTACAGCGTGATA
CGGAATATTGTGGTGAGTCGTTAAGTGTCACCTCGTGGACAAGCCAAGCC
GCGGGTTCATTGCTTTCCATGGCATCTGATCGCGAAGGTAGAGCTGTCGA
AAAAGGTCAATCTTGACCACGGCATTTACAGCGTGATACGGAATATTGTG
GTGAGTCGTTAA
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