prot_H-elongata_contig8446.16058.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig8446.16058.1
Unique Nameprot_H-elongata_contig8446.16058.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length147
Homology
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BLAST of mRNA_H-elongata_contig8446.16058.1 vs. uniprot
Match: D7FJR7_ECTSI (PPIase cyclophilin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJR7_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 7.200e-19
Identity = 48/84 (57.14%), Postives = 58/84 (69.05%), Query Frame = 0 
Query:    1 METVMDNLYMGYGDQLPFNKKGINQNTLQNRGNAYLREEFPLISYFKKCRVVSEMYQDEIGTAS-DSEKHTQVEEIGR--RPPP 81
            M+TV+D  Y GYGDQ PFN+ GINQ TLQ+RGNAYLREEFP ISY K+CRVV E   +E  +A  + ++     E G   RPPP
Sbjct:  149 MDTVVDKFYTGYGDQQPFNQDGINQGTLQSRGNAYLREEFPEISYLKECRVVGETVPEEHASARVEKQQEKPGGEYGDVLRPPP 232
[Close]
BLAST of mRNA_H-elongata_contig8446.16058.1 vs. uniprot
Match: A0A835YQT8_9STRA (PPIase cyclophilin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQT8_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 5.310e-8
Identity = 25/52 (48.08%), Postives = 32/52 (61.54%), Query Frame = 0 
Query:    1 METVMDNLYMGYGDQLPFNKKGINQNTLQNRGNAYLREEFPLISYFKKCRVV 52
            M  V+   Y GYG+  PFN  G+NQ+ +   GNAYLR EFP + Y K C +V
Sbjct:  160 MGEVVRGFYDGYGEMQPFNPAGVNQDLINEEGNAYLRREFPKLDYIKSCAIV 211
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8446.16058.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJR7_ECTSI7.200e-1957.14PPIase cyclophilin-type domain-containing protein ... [more]
A0A835YQT8_9STRA5.310e-848.08PPIase cyclophilin-type domain-containing protein ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..108
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 109..127
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 128..146
NoneNo IPR availableTMHMMTMhelixcoord: 108..127

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8446contigH-elongata_contig8446:4923..5665 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8446.16058.1mRNA_H-elongata_contig8446.16058.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig8446 4868..7025 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig8446.16058.1 ID=prot_H-elongata_contig8446.16058.1|Name=mRNA_H-elongata_contig8446.16058.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=147bp
METVMDNLYMGYGDQLPFNKKGINQNTLQNRGNAYLREEFPLISYFKKCR
VVSEMYQDEIGTASDSEKHTQVEEIGRRPPPHEVPLLESPGYQPALLDPD
GVIQRGGSIGPYVFAVIGFALVLWTFIRNKSSWTWKTRNKRRALKK*
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