mRNA_H-elongata_contig84398.16053.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84398.16053.1
Unique NamemRNA_H-elongata_contig84398.16053.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig84398.16053.1 vs. uniprot
Match: D7FTC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC4_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 5.950e-12
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 DPVFRVRKATALNLHKICRIAGEAGIQRLLPAYVRLT 111
            DPVFRVRKATALNL KIC++ GEAGI RLLPAY+RLT
Sbjct:  194 DPVFRVRKATALNLDKICKVVGEAGIARLLPAYLRLT 230
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BLAST of mRNA_H-elongata_contig84398.16053.1 vs. uniprot
Match: A0A6H5JCV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV5_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 9.930e-12
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 DPVFRVRKATALNLHKICRIAGEAGIQRLLPAYVRL 108
            DPVFRVRKATALNL KIC++ GEAGI RLLPAYVRL
Sbjct:  194 DPVFRVRKATALNLDKICKVVGEAGIARLLPAYVRL 229
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BLAST of mRNA_H-elongata_contig84398.16053.1 vs. uniprot
Match: A0A836CCL0_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCL0_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 8.640e-7
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    1 DPVFRVRKATALNLHKICRIAGEAGIQ-RLLPAY 99
            DPVFRVRKATALNLH +CR+ G A  + RLLPAY
Sbjct:   26 DPVFRVRKATALNLHNVCRVVGAADSRDRLLPAY 59
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BLAST of mRNA_H-elongata_contig84398.16053.1 vs. uniprot
Match: A0A2R5GM29_9STRA (Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GM29_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 8.650e-7
Identity = 26/47 (55.32%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 DPVFRVRKATALNLHKICRIAGEAGIQRLLPAYVRLTKDDVYRVRKS 141
            DP F+VRKA AL++ KI R+A    + RLLPAY RL+KD ++ VRK+
Sbjct:  222 DPSFKVRKAVALSMDKIMRVAHTCSV-RLLPAYERLSKDSIWGVRKA 267
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84398.16053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FTC4_ECTSI5.950e-1283.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCV5_9PHAE9.930e-1286.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CCL0_9STRA8.640e-773.53Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A2R5GM29_9STRA8.650e-755.32Serine/threonine-protein phosphatase 2A 65 kDa reg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84398contigH-elongata_contig84398:2030..2203 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue8.6e-10
Seed eggNOG ortholog2880.D7FTC4
Preferred namePPP4R1
KEGG koko:K15424,ko:K15426
GOsGO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008287,GO:0009987,GO:0010921,GO:0016310,GO:0019208,GO:0019220,GO:0019222,GO:0019538,GO:0019888,GO:0023052,GO:0030234,GO:0030289,GO:0031323,GO:0031399,GO:0032268,GO:0032991,GO:0035303,GO:0035304,GO:0036211,GO:0043170,GO:0043412,GO:0043666,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051174,GO:0051246,GO:0051336,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0098772,GO:1901564,GO:1902494,GO:1903293
EggNOG free text desc.meiotic spindle elongation
EggNOG OGsKOG0211@1,KOG0211@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931249.263438-CDS-H-elongata_contig84398:2029..22031622931249.263438-CDS-H-elongata_contig84398:2029..2203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84398 2030..2203 -
1691679759.2267938-CDS-H-elongata_contig84398:2029..22031691679759.2267938-CDS-H-elongata_contig84398:2029..2203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84398 2030..2203 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84398.16053.1prot_H-elongata_contig84398.16053.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84398 2030..2203 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84398.16053.1

>prot_H-elongata_contig84398.16053.1 ID=prot_H-elongata_contig84398.16053.1|Name=mRNA_H-elongata_contig84398.16053.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
DPVFRVRKATALNLHKICRIAGEAGIQRLLPAYVRLTKDDVYRVRKSVNI
EEAVTNS*
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mRNA from alignment at H-elongata_contig84398:2030..2203-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84398.16053.1 ID=mRNA_H-elongata_contig84398.16053.1|Name=mRNA_H-elongata_contig84398.16053.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig84398:2030..2203- (Himanthalia elongata Himel1 dioecious)
GATCCTGTATTTCGTGTCCGAAAGGCGACGGCCTTGAACCTCCACAAGAT
CTGCAGGATAGCCGGGGAGGCGGGGATTCAGAGGCTGCTCCCAGCGTACG
TCCGACTGACGAAGGATGATGTTTACAGGGTGAGGAAGAGCGTAAATATC
GAGGAGGCGGTTACAAATTCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig84398:2030..2203-

>mRNA_H-elongata_contig84398.16053.1 ID=mRNA_H-elongata_contig84398.16053.1|Name=mRNA_H-elongata_contig84398.16053.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig84398:2030..2203- (Himanthalia elongata Himel1 dioecious)
GATCCTGTATTTCGTGTCCGAAAGGCGACGGCCTTGAACCTCCACAAGAT
CTGCAGGATAGCCGGGGAGGCGGGGATTCAGAGGCTGCTCCCAGCGTACG
TCCGACTGACGAAGGATGATGTTTACAGGGTGAGGAAGAGCGTAAATATC
GAGGAGGCGGTTACAAATTCTTGAGATCCTGTATTTCGTGTCCGAAAGGC
GACGGCCTTGAACCTCCACAAGATCTGCAGGATAGCCGGGGAGGCGGGGA
TTCAGAGGCTGCTCCCAGCGTACGTCCGACTGACGAAGGATGATGTTTAC
AGGGTGAGGAAGAGCGTAAATATCGAGGAGGCGGTTACAAATTCTTGA
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