mRNA_H-elongata_contig84395.16052.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig84395.16052.1 vs. uniprot
Match: D8LPY1_ECTSI (Superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY1_ECTSI) HSP 1 Score: 177 bits (450), Expect = 1.350e-50 Identity = 103/212 (48.58%), Postives = 143/212 (67.45%), Query Frame = 1
Query: 196 GTARIYDTKDFRLVADIQLAGDDLPALFANYTTMVNDVILTKTAAYFTDSVQPQLYKIPLDRNSGELMDGKDTEVVTLAYGAAFPLVSTGPNANGIEVTEDEETLIVAHMAAGELYKVDPNTGEATLIDLDDIKI--YGDGLVLRKNTLWIVEHTYMPGGISRIVEVALSPDLSCGSVV-RNLTSEYFDDPSTAILKGDSIYAVNAKFATTA 822
GTAR+YD +DF LVAD+ L+ + ++ VNDVI+TKTAA+FTDS QP++YK+ LDR +G L+DG V TL P++ N NGIE T+D L++ +M + +L+ VDP+TG ATLIDL + GDGLVLRKNTLW+V++ + +I+EV+L+ DLSCGS+ R L++ FD +TA+ KG+S+YAVNAKF A
Sbjct: 96 GTARVYD-EDFALVADLALSDGN--------SSFVNDVIITKTAAFFTDSFQPKIYKVNLDRETGALVDG--LAVHTLVLSDNVPVLEGAFNVNGIEATDDGSALVIVNMESQQLFAVDPDTGAATLIDLGGELLPGRGDGLVLRKNTLWVVDNA-----LEQILEVSLAADLSCGSLAPRALSNPLFDTQTTAMRKGNSLYAVNAKFGVAA 291
BLAST of mRNA_H-elongata_contig84395.16052.1 vs. uniprot
Match: D7FZ69_ECTSI (Superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ69_ECTSI) HSP 1 Score: 176 bits (447), Expect = 6.740e-50 Identity = 102/207 (49.28%), Postives = 137/207 (66.18%), Query Frame = 1
Query: 196 GTARIYDTKDFRLVADIQLAGDDLPALFANYTTMVNDVILTKTAAYFTDSVQPQLYKIPLDRNSGELMDGKDTEVVTLAYGAAFPLVSTGPNANGIEVTEDEETLIVAHMAAGELYKVDPNTGEATLIDL--DDIKIYGDGLVLRKNTLWIVEHTYMPGGISRIVEVALSPDLSCGSVV-RNLTSEYFDDPSTAILKGDSIYAVNAK 807
GT R+YD +DF LVAD+ T+++NDV++TK AA++TDS QP +YK+ LDR +G L+DG E TL G FP V N NGIEVT+D LIV + + ++Y VDP+TG+AT+IDL D + GDGLVLRKNTLW+ ++ + +I EV+LS DLSCGSV R L++ FD +TA+ KG+S+YAVNAK
Sbjct: 116 GTGRVYD-EDFALVADLDFGDVG--------TSIINDVVVTKGAAFYTDSFQPHIYKVNLDRETGALVDGSSFE--TLVLGDNFPFVEEAINLNGIEVTDDGSALIVVNSESQQVYAVDPDTGDATVIDLGGDVLGPRGDGLVLRKNTLWVSDNV-----LEQIYEVSLSADLSCGSVATRTLSNPLFDRQTTAMRKGNSLYAVNAK 306
BLAST of mRNA_H-elongata_contig84395.16052.1 vs. uniprot
Match: D7G508_ECTSI (Superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G508_ECTSI) HSP 1 Score: 149 bits (377), Expect = 1.390e-39 Identity = 95/222 (42.79%), Postives = 138/222 (62.16%), Query Frame = 1
Query: 178 CATFDEGTARIYDTKD-FRLVADIQLAGDDLPALFANYTTMVNDVILTKTA--AYFTDSVQPQLYKIPLDRNSGELMDGKDT--EVVTLAYGAAFP----LVSTGPNANGIEVTEDEETLIVAHMAAGELYKVDPNTGEATLIDLD-DIKIYGDGLVLRKNTLWIVEHTYMPGGISRIVEVALSPDLSCGSVVRNLTSEYFDDPSTAILKGDSIYAVNAKFA 813
C F G+ IYDT D F LVA+IQL ++VNDVI+ + AY T+S Q Q Y+I LD G L +G +T EV+ L+ +F + N+NGI +T+D +LI+ + +GEL+ VDP+TG+ATLIDL D+ + GDGLVLRKNTLW+ ++ +VEV LS DLSCG++ R L++E+F+DP+TA+ KG+S++ + +A
Sbjct: 90 CGAFS-GSLAIYDTTDDFSLVAEIQLGTVG--------ASLVNDVIIHPRSEYAYITESSQLQFYRIALDEY-GRLPNGPNTVAEVIPLSSDFSFQPGEIIADQALNSNGIVITDDLSSLIIVNYQSGELFAVDPDTGKATLIDLGGDLILGGDGLVLRKNTLWVCQNRLFGTPDQGVVEVLLSEDLSCGTITRRLSNEFFNDPATALRKGNSMWTTISMWA 301
BLAST of mRNA_H-elongata_contig84395.16052.1 vs. uniprot
Match: UPI001ACA8767 (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=UPI001ACA8767) HSP 1 Score: 137 bits (344), Expect = 9.100e-35 Identity = 90/208 (43.27%), Postives = 120/208 (57.69%), Query Frame = 1
Query: 196 GTARIYDTKDFRLVADIQLAGDDLPALFANYTTMVNDVILTKTAAYFTDSVQPQLYKIPLDRNSGELMDGKDTEVVTLAYGAAFPLVSTGPNANGIEVTEDEETLIVAHMAAGELYKVDPNTGEATLIDLDDIKIY-GDGLVLRKNTLWIVEHTYMPGGISRIVEVALSPDLSCGSVVRNLTSEYFDDPSTAILKGDSIYAVNAKFAT 816
G ++DT +A QLA D P T VNDV++T+ AAYFTDS QP LY++P R G L D E + L+ A+ V+ NANGIE T + LI+ H + GELY+VDP TG TLIDL + GDGL L+ TL++V + ++ I + LS L+ G+V LT FD P+T L GDS+YAVNA+F+T
Sbjct: 127 GKGFVFDTDTGATLATYQLA-DASP-------TFVNDVVVTRDAAYFTDSNQPVLYRLPFGRK-GALPDQSAVERIPLS--GAYVFVAGAFNANGIEATANGRWLIIVHSSRGELYRVDPRTGVTTLIDLGGASVSNGDGLRLQGRTLYVVRNR-----LNEIAVIKLSNGLTSGTVTGTLTDPNFDVPTTIGLFGDSLYAVNARFST 318
BLAST of mRNA_H-elongata_contig84395.16052.1 vs. uniprot
Match: UPI001AD49D3E (Uncharacterized protein n=1 Tax=Thermoflexales bacterium TaxID=2497639 RepID=UPI001AD49D3E) HSP 1 Score: 135 bits (339), Expect = 4.920e-34 Identity = 88/220 (40.00%), Postives = 126/220 (57.27%), Query Frame = 1
Query: 166 HANHCATFDEGTAR--IYDTKDFRLVADIQLAGDDLPALFANYTTMVNDVILTKTAAYFTDSVQPQLYKIPLDRNSGELMDGKDTEVVTLAYGAAFPLVSTGPNANGIEVTEDEETLIVAHMAAGELYKVDPNTGEATLIDLDD-IKIYGDGLVLRKNTLWIVEHTYMPGGISRIVEVALSPDLSCGSVVRNLTSEYFDDPSTAILKGDSIYAVNAKFAT 816
H N+ G+ + +++ + +A QLA A T VNDV++TK AAYFTDS QP +YK+PL R GEL D E + L G + V NANGIE + + L++ H + GELY+V+P TGEATL+DL + GDGL LR TL++V++ +++I + L+ D + GSVV +T FD P+T + G +YAVNA+F T
Sbjct: 95 HHNYLFASGAGSGQGFVFNAQTGETLATYQLA--------AGTPTFVNDVVVTKHAAYFTDSNQPFIYKVPLGRR-GELPDQSAVERIPL--GGEYVFVPGAFNANGIEAVANGKWLLIVHSSRGELYRVNPRTGEATLVDLGGAVLTNGDGLRLRGRTLYVVQNR-----LNQIAVIKLNRDWTGGSVVNTITHPNFDVPTTVGVFGPWLYAVNARFTT 298
BLAST of mRNA_H-elongata_contig84395.16052.1 vs. uniprot
Match: A0A6A8G917_9EURY (Superoxide dismutase n=3 Tax=Haloferacaceae TaxID=1644056 RepID=A0A6A8G917_9EURY) HSP 1 Score: 133 bits (334), Expect = 1.640e-33 Identity = 87/208 (41.83%), Postives = 118/208 (56.73%), Query Frame = 1
Query: 196 GTARIYDTKDFRLVADIQLAGDDLPALFANYTTMVNDVILTKTAAYFTDSVQPQLYKIPLDRNSGELMDGKDTEVVTLAYGAAFPLVSTGPNANGIEVTEDEETLIVAHMAAGELYKVDPNTGEATLIDLDDIKIY-GDGLVLRKNTLWIVEHTYMPGGISRIVEVALSPDLSCGSVVRNLTSEYFDDPSTAILKGDSIYAVNAKFAT 816
G A +YD LVAD L G T VNDV++T+TAAYFTDS +P LY++PL G++ D E + L+ F V G NANGI+ + E LIV + + G LYKVDP TG+AT IDL + GDG++L TL++V + ++ I V L P+ + G VV +T FD P+T G+S+YAVNA+F T
Sbjct: 99 GQASVYDANTGALVADYGLQGPP---------TFVNDVVVTRTAAYFTDSFRPALYRVPLGAG-GDVPDQSAVEEIPLS--GDFTSVG-GFNANGIDAPPNGEYLIVVNSSTGLLYKVDPATGDATEIDLGGASLTAGDGILLEGRTLYVVRNQ-----LNLIAVVQLDPEATAGEVVDEITDPQFDVPTTVAGFGNSLYAVNARFGT 288
BLAST of mRNA_H-elongata_contig84395.16052.1 vs. uniprot
Match: A0A3N5UU31_9CHLR (Superoxide dismutase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5UU31_9CHLR) HSP 1 Score: 132 bits (331), Expect = 4.720e-33 Identity = 85/208 (40.87%), Postives = 120/208 (57.69%), Query Frame = 1
Query: 196 GTARIYDTKDFRLVADIQLAGDDLPALFANYTTMVNDVILTKTAAYFTDSVQPQLYKIPLDRNSGELMDGKDTEVVTLAYGAAFPLVSTGPNANGIEVTEDEETLIVAHMAAGELYKVDPNTGEATLIDLDDIKI-YGDGLVLRKNTLWIVEHTYMPGGISRIVEVALSPDLSCGSVVRNLTSEYFDDPSTAILKGDSIYAVNAKFAT 816
G A YD K VA+IQL+ LP+ +NDV++TK AAYFT+S QP L+++PL + G L +E + L G + NANGI T + +TLI+ + G LYKVDP TG AT IDL + GDGL+L+ TL++V++ ++RI + L D S G++V +TS F P+T G+S+YAVNA+F T
Sbjct: 109 GYAYFYDGKTGANVAEIQLS--TLPSF-------INDVVITKEAAYFTNSFQPVLHRVPLAKKGG-LPPAPTSEEIPL--GGDYQFTPGAFNANGIAATPNGKTLIIVNSTEGALYKVDPGTGNATRIDLGGGSVPNGDGLLLQGKTLYVVQNQ-----LNRIAVIRLKSDFSAGTIVNTITSPLFRVPTTIARFGNSLYAVNARFGT 299
BLAST of mRNA_H-elongata_contig84395.16052.1 vs. uniprot
Match: A0A2E0ZGA0_9CHLR (Superoxide dismutase n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A2E0ZGA0_9CHLR) HSP 1 Score: 131 bits (330), Expect = 6.480e-33 Identity = 90/209 (43.06%), Postives = 118/209 (56.46%), Query Frame = 1
Query: 196 GTARIYDTKDFRLVADIQLAGDDLPALFANYTTMVNDVILTKTAAYFTDSVQPQLYKIPLDRNSGELMDGKDTEVVTLAYGAAFPLVSTGPNANGIEVTEDEETLIVAHMAAGELYKVDPNTGEATLIDLDDIKIY-GDGLVLRKNTLWIVEHTYMPGGISRIVEVALSPDLSCGSVVRNLTSEYFDDPSTAILKGDSIYAVNAKFATT 819
G RIY+T LV AG VNDVI+T AAYFTDS P LYK+ LD +SG G D+ TL+ F V G N NGI T + LI+ H + GELYKVDP TGEATLIDL + GDGLVL L++V+++ +++I E LS + + S+ + +T + FD P+TA +G +YAVNA+F TT
Sbjct: 104 GDGRIYNTHTGDLVTSYDFAGG-----------FVNDVIVTPHAAYFTDSFMPVLYKVDLD-DSGT--PGADS---TLSLSGDFVFVPGGFNTNGIVATPNGNALIIVHSSRGELYKVDPQTGEATLIDLGGENVNSGDGLVLVARKLFVVQNS-----LNQIAEFHLSRNYTAASLRQIITDDDFDIPTTADNQGARLYAVNARFGTT 290
BLAST of mRNA_H-elongata_contig84395.16052.1 vs. uniprot
Match: A0A3N5S5I5_9CHLR (Superoxide dismutase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5S5I5_9CHLR) HSP 1 Score: 129 bits (325), Expect = 4.440e-32 Identity = 82/208 (39.42%), Postives = 120/208 (57.69%), Query Frame = 1
Query: 196 GTARIYDTKDFRLVADIQLAGDDLPALFANYTTMVNDVILTKTAAYFTDSVQPQLYKIPLDRNSGELMDGKDTEVVTLAYGAAFPLVSTGPNANGIEVTEDEETLIVAHMAAGELYKVDPNTGEATLIDLDDIKI-YGDGLVLRKNTLWIVEHTYMPGGISRIVEVALSPDLSCGSVVRNLTSEYFDDPSTAILKGDSIYAVNAKFAT 816
G A +YD K VA+IQL+ + +NDV++TK AAYFT+S QP Y++ L R+ G L +E V L G F + N+NGI T + + LI+ + + G LYKVDP TG+A IDL + GDGL+L+ TL++V++ +++I + L D + GS+V +TSE F P+T G+S+YAVNA+F T
Sbjct: 109 GFAYVYDGKTGANVAEIQLS---------TTPSFINDVVITKDAAYFTNSFQPVFYRVSLARHGG-LPPAPTSEEVPL--GGDFQFIPDAFNSNGIAATPNGKALIIVNSSEGALYKVDPATGDAKRIDLGGGSVPNGDGLLLQGKTLYVVQNQ-----LNQIAVIRLKSDFTSGSIVNTITSELFRVPTTIARFGNSLYAVNARFGT 299
BLAST of mRNA_H-elongata_contig84395.16052.1 vs. uniprot
Match: A0A3N5SDK2_9CHLR (Superoxide dismutase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5SDK2_9CHLR) HSP 1 Score: 129 bits (325), Expect = 5.820e-32 Identity = 81/210 (38.57%), Postives = 122/210 (58.10%), Query Frame = 1
Query: 190 DEGTARIYDTKDFRLVADIQLAGDDLPALFANYTTMVNDVILTKTAAYFTDSVQPQLYKIPLDRNSGELMDGKDTEVVTLAYGAAFPLVSTGPNANGIEVTEDEETLIVAHMAAGELYKVDPNTGEATLIDLDDIKI-YGDGLVLRKNTLWIVEHTYMPGGISRIVEVALSPDLSCGSVVRNLTSEYFDDPSTAILKGDSIYAVNAKFAT 816
D G A +Y+ + VA+ QL D+ +NDV+ T+ AAYFT+S QP LY+IPL + GE D +D EV + G + + + G N NGI+ T + E L++ + G L++VDP TGEA IDL D + GDG++L TL++V++ +++I V LS D + G +V +T + FD P+T G ++YAVNA+F T
Sbjct: 120 DTGQAFVYNARSGESVAEFQLTEDE--------DVFINDVVATRGAAYFTNSFQPVLYRIPLG-SCGE--DLEDAEVEEIDLGGDY-VQAEGFNVNGIDATPNGEWLLIVQSSTGLLFRVDPETGEALEIDLGDDSVPNGDGILLDDQTLYVVQNQ-----LNKIAVVELSDDFTSGEIVDEITHDEFDVPTTIAEFGTTLYAVNARFGT 312 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84395.16052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig84395.16052.1 >prot_H-elongata_contig84395.16052.1 ID=prot_H-elongata_contig84395.16052.1|Name=mRNA_H-elongata_contig84395.16052.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=229bp MTTSCLNHANHCATFDEGTARIYDTKDFRLVADIQLAGDDLPALFANYTTback to top mRNA from alignment at H-elongata_contig84395:474..2590- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig84395.16052.1 ID=mRNA_H-elongata_contig84395.16052.1|Name=mRNA_H-elongata_contig84395.16052.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2117bp|location=Sequence derived from alignment at H-elongata_contig84395:474..2590- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig84395:474..2590- >mRNA_H-elongata_contig84395.16052.1 ID=mRNA_H-elongata_contig84395.16052.1|Name=mRNA_H-elongata_contig84395.16052.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1374bp|location=Sequence derived from alignment at H-elongata_contig84395:474..2590- (Himanthalia elongata Himel1 dioecious)back to top |