mRNA_H-elongata_contig84395.16052.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84395.16052.1
Unique NamemRNA_H-elongata_contig84395.16052.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig84395.16052.1 vs. uniprot
Match: D8LPY1_ECTSI (Superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY1_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 1.350e-50
Identity = 103/212 (48.58%), Postives = 143/212 (67.45%), Query Frame = 1
Query:  196 GTARIYDTKDFRLVADIQLAGDDLPALFANYTTMVNDVILTKTAAYFTDSVQPQLYKIPLDRNSGELMDGKDTEVVTLAYGAAFPLVSTGPNANGIEVTEDEETLIVAHMAAGELYKVDPNTGEATLIDLDDIKI--YGDGLVLRKNTLWIVEHTYMPGGISRIVEVALSPDLSCGSVV-RNLTSEYFDDPSTAILKGDSIYAVNAKFATTA 822
            GTAR+YD +DF LVAD+ L+  +        ++ VNDVI+TKTAA+FTDS QP++YK+ LDR +G L+DG    V TL      P++    N NGIE T+D   L++ +M + +L+ VDP+TG ATLIDL    +   GDGLVLRKNTLW+V++      + +I+EV+L+ DLSCGS+  R L++  FD  +TA+ KG+S+YAVNAKF   A
Sbjct:   96 GTARVYD-EDFALVADLALSDGN--------SSFVNDVIITKTAAFFTDSFQPKIYKVNLDRETGALVDG--LAVHTLVLSDNVPVLEGAFNVNGIEATDDGSALVIVNMESQQLFAVDPDTGAATLIDLGGELLPGRGDGLVLRKNTLWVVDNA-----LEQILEVSLAADLSCGSLAPRALSNPLFDTQTTAMRKGNSLYAVNAKFGVAA 291          
BLAST of mRNA_H-elongata_contig84395.16052.1 vs. uniprot
Match: D7FZ69_ECTSI (Superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ69_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 6.740e-50
Identity = 102/207 (49.28%), Postives = 137/207 (66.18%), Query Frame = 1
Query:  196 GTARIYDTKDFRLVADIQLAGDDLPALFANYTTMVNDVILTKTAAYFTDSVQPQLYKIPLDRNSGELMDGKDTEVVTLAYGAAFPLVSTGPNANGIEVTEDEETLIVAHMAAGELYKVDPNTGEATLIDL--DDIKIYGDGLVLRKNTLWIVEHTYMPGGISRIVEVALSPDLSCGSVV-RNLTSEYFDDPSTAILKGDSIYAVNAK 807
            GT R+YD +DF LVAD+              T+++NDV++TK AA++TDS QP +YK+ LDR +G L+DG   E  TL  G  FP V    N NGIEVT+D   LIV +  + ++Y VDP+TG+AT+IDL  D +   GDGLVLRKNTLW+ ++      + +I EV+LS DLSCGSV  R L++  FD  +TA+ KG+S+YAVNAK
Sbjct:  116 GTGRVYD-EDFALVADLDFGDVG--------TSIINDVVVTKGAAFYTDSFQPHIYKVNLDRETGALVDGSSFE--TLVLGDNFPFVEEAINLNGIEVTDDGSALIVVNSESQQVYAVDPDTGDATVIDLGGDVLGPRGDGLVLRKNTLWVSDNV-----LEQIYEVSLSADLSCGSVATRTLSNPLFDRQTTAMRKGNSLYAVNAK 306          
BLAST of mRNA_H-elongata_contig84395.16052.1 vs. uniprot
Match: D7G508_ECTSI (Superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G508_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 1.390e-39
Identity = 95/222 (42.79%), Postives = 138/222 (62.16%), Query Frame = 1
Query:  178 CATFDEGTARIYDTKD-FRLVADIQLAGDDLPALFANYTTMVNDVILTKTA--AYFTDSVQPQLYKIPLDRNSGELMDGKDT--EVVTLAYGAAFP----LVSTGPNANGIEVTEDEETLIVAHMAAGELYKVDPNTGEATLIDLD-DIKIYGDGLVLRKNTLWIVEHTYMPGGISRIVEVALSPDLSCGSVVRNLTSEYFDDPSTAILKGDSIYAVNAKFA 813
            C  F  G+  IYDT D F LVA+IQL             ++VNDVI+   +  AY T+S Q Q Y+I LD   G L +G +T  EV+ L+   +F     +     N+NGI +T+D  +LI+ +  +GEL+ VDP+TG+ATLIDL  D+ + GDGLVLRKNTLW+ ++         +VEV LS DLSCG++ R L++E+F+DP+TA+ KG+S++   + +A
Sbjct:   90 CGAFS-GSLAIYDTTDDFSLVAEIQLGTVG--------ASLVNDVIIHPRSEYAYITESSQLQFYRIALDEY-GRLPNGPNTVAEVIPLSSDFSFQPGEIIADQALNSNGIVITDDLSSLIIVNYQSGELFAVDPDTGKATLIDLGGDLILGGDGLVLRKNTLWVCQNRLFGTPDQGVVEVLLSEDLSCGTITRRLSNEFFNDPATALRKGNSMWTTISMWA 301          
BLAST of mRNA_H-elongata_contig84395.16052.1 vs. uniprot
Match: UPI001ACA8767 (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=UPI001ACA8767)

HSP 1 Score: 137 bits (344), Expect = 9.100e-35
Identity = 90/208 (43.27%), Postives = 120/208 (57.69%), Query Frame = 1
Query:  196 GTARIYDTKDFRLVADIQLAGDDLPALFANYTTMVNDVILTKTAAYFTDSVQPQLYKIPLDRNSGELMDGKDTEVVTLAYGAAFPLVSTGPNANGIEVTEDEETLIVAHMAAGELYKVDPNTGEATLIDLDDIKIY-GDGLVLRKNTLWIVEHTYMPGGISRIVEVALSPDLSCGSVVRNLTSEYFDDPSTAILKGDSIYAVNAKFAT 816
            G   ++DT     +A  QLA D  P       T VNDV++T+ AAYFTDS QP LY++P  R  G L D    E + L+   A+  V+   NANGIE T +   LI+ H + GELY+VDP TG  TLIDL    +  GDGL L+  TL++V +      ++ I  + LS  L+ G+V   LT   FD P+T  L GDS+YAVNA+F+T
Sbjct:  127 GKGFVFDTDTGATLATYQLA-DASP-------TFVNDVVVTRDAAYFTDSNQPVLYRLPFGRK-GALPDQSAVERIPLS--GAYVFVAGAFNANGIEATANGRWLIIVHSSRGELYRVDPRTGVTTLIDLGGASVSNGDGLRLQGRTLYVVRNR-----LNEIAVIKLSNGLTSGTVTGTLTDPNFDVPTTIGLFGDSLYAVNARFST 318          
BLAST of mRNA_H-elongata_contig84395.16052.1 vs. uniprot
Match: UPI001AD49D3E (Uncharacterized protein n=1 Tax=Thermoflexales bacterium TaxID=2497639 RepID=UPI001AD49D3E)

HSP 1 Score: 135 bits (339), Expect = 4.920e-34
Identity = 88/220 (40.00%), Postives = 126/220 (57.27%), Query Frame = 1
Query:  166 HANHCATFDEGTAR--IYDTKDFRLVADIQLAGDDLPALFANYTTMVNDVILTKTAAYFTDSVQPQLYKIPLDRNSGELMDGKDTEVVTLAYGAAFPLVSTGPNANGIEVTEDEETLIVAHMAAGELYKVDPNTGEATLIDLDD-IKIYGDGLVLRKNTLWIVEHTYMPGGISRIVEVALSPDLSCGSVVRNLTSEYFDDPSTAILKGDSIYAVNAKFAT 816
            H N+      G+ +  +++ +    +A  QLA        A   T VNDV++TK AAYFTDS QP +YK+PL R  GEL D    E + L  G  +  V    NANGIE   + + L++ H + GELY+V+P TGEATL+DL   +   GDGL LR  TL++V++      +++I  + L+ D + GSVV  +T   FD P+T  + G  +YAVNA+F T
Sbjct:   95 HHNYLFASGAGSGQGFVFNAQTGETLATYQLA--------AGTPTFVNDVVVTKHAAYFTDSNQPFIYKVPLGRR-GELPDQSAVERIPL--GGEYVFVPGAFNANGIEAVANGKWLLIVHSSRGELYRVNPRTGEATLVDLGGAVLTNGDGLRLRGRTLYVVQNR-----LNQIAVIKLNRDWTGGSVVNTITHPNFDVPTTVGVFGPWLYAVNARFTT 298          
BLAST of mRNA_H-elongata_contig84395.16052.1 vs. uniprot
Match: A0A6A8G917_9EURY (Superoxide dismutase n=3 Tax=Haloferacaceae TaxID=1644056 RepID=A0A6A8G917_9EURY)

HSP 1 Score: 133 bits (334), Expect = 1.640e-33
Identity = 87/208 (41.83%), Postives = 118/208 (56.73%), Query Frame = 1
Query:  196 GTARIYDTKDFRLVADIQLAGDDLPALFANYTTMVNDVILTKTAAYFTDSVQPQLYKIPLDRNSGELMDGKDTEVVTLAYGAAFPLVSTGPNANGIEVTEDEETLIVAHMAAGELYKVDPNTGEATLIDLDDIKIY-GDGLVLRKNTLWIVEHTYMPGGISRIVEVALSPDLSCGSVVRNLTSEYFDDPSTAILKGDSIYAVNAKFAT 816
            G A +YD     LVAD  L G           T VNDV++T+TAAYFTDS +P LY++PL    G++ D    E + L+    F  V  G NANGI+   + E LIV + + G LYKVDP TG+AT IDL    +  GDG++L   TL++V +      ++ I  V L P+ + G VV  +T   FD P+T    G+S+YAVNA+F T
Sbjct:   99 GQASVYDANTGALVADYGLQGPP---------TFVNDVVVTRTAAYFTDSFRPALYRVPLGAG-GDVPDQSAVEEIPLS--GDFTSVG-GFNANGIDAPPNGEYLIVVNSSTGLLYKVDPATGDATEIDLGGASLTAGDGILLEGRTLYVVRNQ-----LNLIAVVQLDPEATAGEVVDEITDPQFDVPTTVAGFGNSLYAVNARFGT 288          
BLAST of mRNA_H-elongata_contig84395.16052.1 vs. uniprot
Match: A0A3N5UU31_9CHLR (Superoxide dismutase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5UU31_9CHLR)

HSP 1 Score: 132 bits (331), Expect = 4.720e-33
Identity = 85/208 (40.87%), Postives = 120/208 (57.69%), Query Frame = 1
Query:  196 GTARIYDTKDFRLVADIQLAGDDLPALFANYTTMVNDVILTKTAAYFTDSVQPQLYKIPLDRNSGELMDGKDTEVVTLAYGAAFPLVSTGPNANGIEVTEDEETLIVAHMAAGELYKVDPNTGEATLIDLDDIKI-YGDGLVLRKNTLWIVEHTYMPGGISRIVEVALSPDLSCGSVVRNLTSEYFDDPSTAILKGDSIYAVNAKFAT 816
            G A  YD K    VA+IQL+   LP+        +NDV++TK AAYFT+S QP L+++PL +  G L     +E + L  G  +       NANGI  T + +TLI+ +   G LYKVDP TG AT IDL    +  GDGL+L+  TL++V++      ++RI  + L  D S G++V  +TS  F  P+T    G+S+YAVNA+F T
Sbjct:  109 GYAYFYDGKTGANVAEIQLS--TLPSF-------INDVVITKEAAYFTNSFQPVLHRVPLAKKGG-LPPAPTSEEIPL--GGDYQFTPGAFNANGIAATPNGKTLIIVNSTEGALYKVDPGTGNATRIDLGGGSVPNGDGLLLQGKTLYVVQNQ-----LNRIAVIRLKSDFSAGTIVNTITSPLFRVPTTIARFGNSLYAVNARFGT 299          
BLAST of mRNA_H-elongata_contig84395.16052.1 vs. uniprot
Match: A0A2E0ZGA0_9CHLR (Superoxide dismutase n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A2E0ZGA0_9CHLR)

HSP 1 Score: 131 bits (330), Expect = 6.480e-33
Identity = 90/209 (43.06%), Postives = 118/209 (56.46%), Query Frame = 1
Query:  196 GTARIYDTKDFRLVADIQLAGDDLPALFANYTTMVNDVILTKTAAYFTDSVQPQLYKIPLDRNSGELMDGKDTEVVTLAYGAAFPLVSTGPNANGIEVTEDEETLIVAHMAAGELYKVDPNTGEATLIDLDDIKIY-GDGLVLRKNTLWIVEHTYMPGGISRIVEVALSPDLSCGSVVRNLTSEYFDDPSTAILKGDSIYAVNAKFATT 819
            G  RIY+T    LV     AG             VNDVI+T  AAYFTDS  P LYK+ LD +SG    G D+   TL+    F  V  G N NGI  T +   LI+ H + GELYKVDP TGEATLIDL    +  GDGLVL    L++V+++     +++I E  LS + +  S+ + +T + FD P+TA  +G  +YAVNA+F TT
Sbjct:  104 GDGRIYNTHTGDLVTSYDFAGG-----------FVNDVIVTPHAAYFTDSFMPVLYKVDLD-DSGT--PGADS---TLSLSGDFVFVPGGFNTNGIVATPNGNALIIVHSSRGELYKVDPQTGEATLIDLGGENVNSGDGLVLVARKLFVVQNS-----LNQIAEFHLSRNYTAASLRQIITDDDFDIPTTADNQGARLYAVNARFGTT 290          
BLAST of mRNA_H-elongata_contig84395.16052.1 vs. uniprot
Match: A0A3N5S5I5_9CHLR (Superoxide dismutase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5S5I5_9CHLR)

HSP 1 Score: 129 bits (325), Expect = 4.440e-32
Identity = 82/208 (39.42%), Postives = 120/208 (57.69%), Query Frame = 1
Query:  196 GTARIYDTKDFRLVADIQLAGDDLPALFANYTTMVNDVILTKTAAYFTDSVQPQLYKIPLDRNSGELMDGKDTEVVTLAYGAAFPLVSTGPNANGIEVTEDEETLIVAHMAAGELYKVDPNTGEATLIDLDDIKI-YGDGLVLRKNTLWIVEHTYMPGGISRIVEVALSPDLSCGSVVRNLTSEYFDDPSTAILKGDSIYAVNAKFAT 816
            G A +YD K    VA+IQL+            + +NDV++TK AAYFT+S QP  Y++ L R+ G L     +E V L  G  F  +    N+NGI  T + + LI+ + + G LYKVDP TG+A  IDL    +  GDGL+L+  TL++V++      +++I  + L  D + GS+V  +TSE F  P+T    G+S+YAVNA+F T
Sbjct:  109 GFAYVYDGKTGANVAEIQLS---------TTPSFINDVVITKDAAYFTNSFQPVFYRVSLARHGG-LPPAPTSEEVPL--GGDFQFIPDAFNSNGIAATPNGKALIIVNSSEGALYKVDPATGDAKRIDLGGGSVPNGDGLLLQGKTLYVVQNQ-----LNQIAVIRLKSDFTSGSIVNTITSELFRVPTTIARFGNSLYAVNARFGT 299          
BLAST of mRNA_H-elongata_contig84395.16052.1 vs. uniprot
Match: A0A3N5SDK2_9CHLR (Superoxide dismutase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5SDK2_9CHLR)

HSP 1 Score: 129 bits (325), Expect = 5.820e-32
Identity = 81/210 (38.57%), Postives = 122/210 (58.10%), Query Frame = 1
Query:  190 DEGTARIYDTKDFRLVADIQLAGDDLPALFANYTTMVNDVILTKTAAYFTDSVQPQLYKIPLDRNSGELMDGKDTEVVTLAYGAAFPLVSTGPNANGIEVTEDEETLIVAHMAAGELYKVDPNTGEATLIDLDDIKI-YGDGLVLRKNTLWIVEHTYMPGGISRIVEVALSPDLSCGSVVRNLTSEYFDDPSTAILKGDSIYAVNAKFAT 816
            D G A +Y+ +    VA+ QL  D+           +NDV+ T+ AAYFT+S QP LY+IPL  + GE  D +D EV  +  G  + + + G N NGI+ T + E L++   + G L++VDP TGEA  IDL D  +  GDG++L   TL++V++      +++I  V LS D + G +V  +T + FD P+T    G ++YAVNA+F T
Sbjct:  120 DTGQAFVYNARSGESVAEFQLTEDE--------DVFINDVVATRGAAYFTNSFQPVLYRIPLG-SCGE--DLEDAEVEEIDLGGDY-VQAEGFNVNGIDATPNGEWLLIVQSSTGLLFRVDPETGEALEIDLGDDSVPNGDGILLDDQTLYVVQNQ-----LNKIAVVELSDDFTSGEIVDEITHDEFDVPTTIAEFGTTLYAVNARFGT 312          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84395.16052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPY1_ECTSI1.350e-5048.58Superoxide dismutase n=1 Tax=Ectocarpus siliculosu... [more]
D7FZ69_ECTSI6.740e-5049.28Superoxide dismutase n=1 Tax=Ectocarpus siliculosu... [more]
D7G508_ECTSI1.390e-3942.79Superoxide dismutase n=1 Tax=Ectocarpus siliculosu... [more]
UPI001ACA87679.100e-3543.27Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
UPI001AD49D3E4.920e-3440.00Uncharacterized protein n=1 Tax=Thermoflexales bac... [more]
A0A6A8G917_9EURY1.640e-3341.83Superoxide dismutase n=3 Tax=Haloferacaceae TaxID=... [more]
A0A3N5UU31_9CHLR4.720e-3340.87Superoxide dismutase (Fragment) n=1 Tax=Chloroflex... [more]
A0A2E0ZGA0_9CHLR6.480e-3343.06Superoxide dismutase n=1 Tax=Anaerolineaceae bacte... [more]
A0A3N5S5I5_9CHLR4.440e-3239.42Superoxide dismutase n=1 Tax=Chloroflexi bacterium... [more]
A0A3N5SDK2_9CHLR5.820e-3238.57Superoxide dismutase n=1 Tax=Chloroflexi bacterium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84395contigH-elongata_contig84395:474..2590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.0
Seed ortholog evalue6.2e-43
Seed eggNOG ortholog2880.D8LPY1
EggNOG OGs2D5U8@1,2SZPX@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size831
Cds size687
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84395.16052.1prot_H-elongata_contig84395.16052.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84395 474..2446 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931249.1429212-CDS-H-elongata_contig84395:473..6171622931249.1429212-CDS-H-elongata_contig84395:473..617Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84395 474..617 -
1691679759.14443-CDS-H-elongata_contig84395:473..6171691679759.14443-CDS-H-elongata_contig84395:473..617Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84395 474..617 -
1622931249.1580517-CDS-H-elongata_contig84395:969..10411622931249.1580517-CDS-H-elongata_contig84395:969..1041Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84395 970..1041 -
1691679759.1580858-CDS-H-elongata_contig84395:969..10411691679759.1580858-CDS-H-elongata_contig84395:969..1041Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84395 970..1041 -
1622931249.1732442-CDS-H-elongata_contig84395:1336..14651622931249.1732442-CDS-H-elongata_contig84395:1336..1465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84395 1337..1465 -
1691679759.178284-CDS-H-elongata_contig84395:1336..14651691679759.178284-CDS-H-elongata_contig84395:1336..1465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84395 1337..1465 -
1622931249.1922002-CDS-H-elongata_contig84395:1989..21091622931249.1922002-CDS-H-elongata_contig84395:1989..2109Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84395 1990..2109 -
1691679759.191388-CDS-H-elongata_contig84395:1989..21091691679759.191388-CDS-H-elongata_contig84395:1989..2109Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84395 1990..2109 -
1622931249.2061303-CDS-H-elongata_contig84395:2224..24461622931249.2061303-CDS-H-elongata_contig84395:2224..2446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84395 2225..2446 -
1691679759.2026832-CDS-H-elongata_contig84395:2224..24461691679759.2026832-CDS-H-elongata_contig84395:2224..2446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84395 2225..2446 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931249.2229753-UTR-H-elongata_contig84395:2446..25901622931249.2229753-UTR-H-elongata_contig84395:2446..2590Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84395 2447..2590 -
1691679759.215632-UTR-H-elongata_contig84395:2446..25901691679759.215632-UTR-H-elongata_contig84395:2446..2590Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84395 2447..2590 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84395.16052.1

>prot_H-elongata_contig84395.16052.1 ID=prot_H-elongata_contig84395.16052.1|Name=mRNA_H-elongata_contig84395.16052.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=229bp
MTTSCLNHANHCATFDEGTARIYDTKDFRLVADIQLAGDDLPALFANYTT
MVNDVILTKTAAYFTDSVQPQLYKIPLDRNSGELMDGKDTEVVTLAYGAA
FPLVSTGPNANGIEVTEDEETLIVAHMAAGELYKVDPNTGEATLIDLDDI
KIYGDGLVLRKNTLWIVEHTYMPGGISRIVEVALSPDLSCGSVVRNLTSE
YFDDPSTAILKGDSIYAVNAKFATTATNG
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mRNA from alignment at H-elongata_contig84395:474..2590-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84395.16052.1 ID=mRNA_H-elongata_contig84395.16052.1|Name=mRNA_H-elongata_contig84395.16052.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2117bp|location=Sequence derived from alignment at H-elongata_contig84395:474..2590- (Himanthalia elongata Himel1 dioecious)
GCCAGAGCTCGGGGTGCGAGGAACCTTGCAACACCATATACACCCGAAAC GGCACTCAATAGCTGCACGGTTGCAAAGGTGCTGGTCATGAACCTTTTTT ATAGGTTATCTGTCGGCTCGTACTACCATTCTACATTTTGATCCATGACG ACATCGTGCTTGAATCATGCCAATCATTGCGCTACTTTTGACGAAGGTAC GGCCCGCATTTACGATACGAAGGATTTCCGGCTCGTCGCGGACATCCAGC TGGCTGGCGACGACCTCCCTGCACTCTTCGCAAATTATACAACAATGGTA AACGACGTCATCTTAACCAAGACCGCGGCGTATTTCACCGACTCCGTCCA GCCACAACTGTACAAGGTGAAAACGGTACCCCAATAAACACATTGTTCTC ATTGCTGCTCACATGGAGCATCGTCTGAACTCTCCCGGTACGCGATGGAA TCCCAACCGCCCCACGTTTGTTGTGCCTCAGATACCGCTGGATAGGAATA GCGGAGAACTCATGGATGGCAAGGACACGGAGGTTGTTACCCTTGCCTAC GGTGCAGCATTCCCGCTCGTCTCTACGGGACCGAACGCGAATGGAATCGA GGTGAATGGTAACACCGCCGCGTAGTCTTGACATAAACGCTCGCTGCAGA TGATCTGAAGCGATTTAGATAGCTCAAGGCGTACGCTGCACGACGCCCCC TCATCGGAAGTGTTGAGACTCGAGCCCAGATCACACTTTTACATCAATGG GTACTTGATGACTATTATCCTTGGTCTTGCCACAATTGCTTATCAGACAC CGCTGATGTTGCCGTAGATGGTAAATCATCGCCGAAAGAAGTGTTGAATG GAACGCGATTCCCCTTCTACCTATATTTAGAAAACACCGCAAATCAACGC GTATATGTTGCATTGCATGATGTCCTCTCTGTAGATGGCGCGGATGTATC ATGTACTAATCGAACGATCTCCGAGTTCCGTTAACATACTTTTTACATTT AGGTTTTAGCGTGTGTCCATTCTCGTAGCCAAGGACTCCGGTAACGTTTT GAAACATAAGACCCGCAATTAGAGCTAAATATCCTTCAATAAGATCCTAT TATGATGTGATCGGGTATTCTTTAGGTCACCGAAGACGAAGAGACCCTCA TCGTGGCCCACATGGCCGCTGGCGAGCTCTATAAGGTTGACCCTAACACT GGCGAGGCGACTTTGATCGACCTTGATGACATCAAAATCTACGGCGATGG GTTGGTAAGACTCTGAAGCACAAGTACAACTCCCAGTGGAACGTACCATC GCGCACGATATTAAGGCCGTCCGGTTATTGACCCATTTCGCACTATTCGC CATCGCGGTAGATTGTAAATCAAAATCTAGCCTCCTTCGGGTCCACCCCA TATAACTTGAAAATATCCCGCATCATGCACTACCCTGTGATCGTGTCTGA AACCATGCCCAAGCGCGCAATTGCAGGTATCTTGTGTCAGCTAACTGAGA TTTCCTGCCTTGCCGCAAATCCCCACGTGATACGATGCATTTATACTAGG TTTTGCGCAAGAACACACTCTGGATAGTCGAGCACACCTACATGCCCGGA GGAATCTCGCGTATTGTAGAGGTGGGTTCGGACAAGCAAACCATGGAGGC AAACATGAGCACTCAAATCCCAATATCACACGCGTTTCTCATGAAGCGGG TGAGAGTCTGTCAGCTAAAATAAACTTCCCCAGAATTCCGCAAGCGGTCG CAAAATGTCCAGGACGCAATCTGACGGTGCCAACACAATCATGGCTGTAG AGTTTGGGAAAATTTGTCTCTGTAGATAAAGAGTTGCCTGCGCAGTAGAG TAGGCCCAGGTTGCGAGGGAGTAGTACCCGCTAAAGAACGCCTCTATATA ACCCCATCACACCTTCATATGTTACCTATTTGGCATAATTAAACAACCGA TGCGCTCATATTTTTATGAACAGGTGGCACTGTCCCCCGACCTGAGCTGT GGCTCGGTGGTGCGAAACCTGACAAGCGAGTACTTCGACGACCCTTCCAC CGCGATACTCAAAGGCGACTCCATATACGCCGTAAATGCCAAGTTTGCGA CCACAGCCACGAATGGG
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Coding sequence (CDS) from alignment at H-elongata_contig84395:474..2590-

>mRNA_H-elongata_contig84395.16052.1 ID=mRNA_H-elongata_contig84395.16052.1|Name=mRNA_H-elongata_contig84395.16052.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1374bp|location=Sequence derived from alignment at H-elongata_contig84395:474..2590- (Himanthalia elongata Himel1 dioecious)
ATGACGACATCGTGCTTGAATCATGCCAATCATTGCGCTACTTTTGACGA
AGGTACGGCCCGCATTTACGATACGAAGGATTTCCGGCTCGTCGCGGACA
TCCAGCTGGCTGGCGACGACCTCCCTGCACTCTTCGCAAATTATACAACA
ATGGTAAACGACGTCATCTTAACCAAGACCGCGGCGTATTTCACCGACTC
CGTCCAGCCACAACTGTACAAGATGACGACATCGTGCTTGAATCATGCCA
ATCATTGCGCTACTTTTGACGAAGGTACGGCCCGCATTTACGATACGAAG
GATTTCCGGCTCGTCGCGGACATCCAGCTGGCTGGCGACGACCTCCCTGC
ACTCTTCGCAAATTATACAACAATGGTAAACGACGTCATCTTAACCAAGA
CCGCGGCGTATTTCACCGACTCCGTCCAGCCACAACTGTACAAGATACCG
CTGGATAGGAATAGCGGAGAACTCATGGATGGCAAGGACACGGAGGTTGT
TACCCTTGCCTACGGTGCAGCATTCCCGCTCGTCTCTACGGGACCGAACG
CGAATGGAATCGAGATACCGCTGGATAGGAATAGCGGAGAACTCATGGAT
GGCAAGGACACGGAGGTTGTTACCCTTGCCTACGGTGCAGCATTCCCGCT
CGTCTCTACGGGACCGAACGCGAATGGAATCGAGGTCACCGAAGACGAAG
AGACCCTCATCGTGGCCCACATGGCCGCTGGCGAGCTCTATAAGGTTGAC
CCTAACACTGGCGAGGCGACTTTGATCGACCTTGATGACATCAAAATCTA
CGGCGATGGGTTGGTCACCGAAGACGAAGAGACCCTCATCGTGGCCCACA
TGGCCGCTGGCGAGCTCTATAAGGTTGACCCTAACACTGGCGAGGCGACT
TTGATCGACCTTGATGACATCAAAATCTACGGCGATGGGTTGGTTTTGCG
CAAGAACACACTCTGGATAGTCGAGCACACCTACATGCCCGGAGGAATCT
CGCGTATTGTAGAGGTTTTGCGCAAGAACACACTCTGGATAGTCGAGCAC
ACCTACATGCCCGGAGGAATCTCGCGTATTGTAGAGGTGGCACTGTCCCC
CGACCTGAGCTGTGGCTCGGTGGTGCGAAACCTGACAAGCGAGTACTTCG
ACGACCCTTCCACCGCGATACTCAAAGGCGACTCCATATACGCCGTAAAT
GCCAAGTTTGCGACCACAGCCACGAATGGGGTGGCACTGTCCCCCGACCT
GAGCTGTGGCTCGGTGGTGCGAAACCTGACAAGCGAGTACTTCGACGACC
CTTCCACCGCGATACTCAAAGGCGACTCCATATACGCCGTAAATGCCAAG
TTTGCGACCACAGCCACGAATGGG
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