prot_H-elongata_contig84369.16050.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig84369.16050.1
Unique Name	prot_H-elongata_contig84369.16050.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	119

Homology

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BLAST of mRNA_H-elongata_contig84369.16050.1 vs. uniprot
Match: FCPE_MACPY (Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY)

HSP 1 Score: 218 bits (556), Expect = 1.930e-70
Identity = 105/118 (88.98%), Postives = 112/118 (94.92%), Query Frame = 0

Query:    1 MLSFKDDIAFADVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEGSFPGDCTIGGNVFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLVGASYTFN 118
            MLSFK+++AFAD PNG+AAFSKIPPLGTLQIILAIG HELFVVKQVEGSFPGDCT GGN+FQSAWDN SEET+ASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDL GA+Y FN
Sbjct:   95 MLSFKENLAFADSPNGVAAFSKIPPLGTLQIILAIGCHELFVVKQVEGSFPGDCTTGGNIFQSAWDNMSEETQASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYQFN 212

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BLAST of mRNA_H-elongata_contig84369.16050.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 173 bits (439), Expect = 1.350e-52
Identity = 84/118 (71.19%), Postives = 99/118 (83.90%), Query Frame = 0

Query:    1 MLSFKDDIAFADVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEGSFPGDCTIGGNVFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLVGASYTFN 118
            MLS   +++FAD+PNG+AA SKIPP G  QI   IG  EL V+K VEGSFPGD T+GGN F ++WD  SEET+ASKRAIELNNGRAAQMGILA+MVHE+L+N+PY+INDLVGASYTFN
Sbjct:  100 MLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217

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BLAST of mRNA_H-elongata_contig84369.16050.1 vs. uniprot
Match: A0A6H5KBS3_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS3_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 1.370e-52
Identity = 84/117 (71.79%), Postives = 95/117 (81.20%), Query Frame = 0

Query:    2 LSFKDDIAFADVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEGSFPGDCTIGGNVFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLVGASYTFN 118
            LS+   + FAD+PNG+AA SKIPPLG  QI+  IG  EL V+K VEGSFPGD TIGGN F + WD  SEETK SKRAIELNNGRAAQMGILAMM+HE++SNQPYIINDL+ A YTFN
Sbjct:   90 LSYDAKLTFADMPNGVAAISKIPPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 206

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BLAST of mRNA_H-elongata_contig84369.16050.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 6.140e-52
Identity = 83/118 (70.34%), Postives = 97/118 (82.20%), Query Frame = 0

Query:    1 MLSFKDDIAFADVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEGSFPGDCTIGGNVFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLVGASYTFN 118
            MLS   D++FAD+PNG+AA SKIPP G  QI   +G  EL V+K VEGSFPGD T GGN F S+WD  SEET+ASKRAIELNNGRAAQMGILA+MVHE+L+N+PY+INDL+GA YTFN
Sbjct:  104 MLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221

[Close]

BLAST of mRNA_H-elongata_contig84369.16050.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.040e-51
Identity = 82/118 (69.49%), Postives = 97/118 (82.20%), Query Frame = 0

Query:    1 MLSFKDDIAFADVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEGSFPGDCTIGGNVFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLVGASYTFN 118
            MLS   +++FAD+PNG+AA SKIPP G  QI   IG  EL V+K VEGSFPGD T+GGN F S+WD  SEET+ASKRAIELNNGRAAQMGILA+MVHE+L+N+PY+INDL+GA Y FN
Sbjct:   64 MLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181

[Close]

BLAST of mRNA_H-elongata_contig84369.16050.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 170 bits (430), Expect = 2.610e-51
Identity = 85/118 (72.03%), Postives = 96/118 (81.36%), Query Frame = 0

Query:    1 MLSFKDDIAFADVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEGSFPGDCTIGGNVFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLVGASYTFN 118
            MLS   +++FAD+PNG+AA SKIPP G  QI   IG  EL V+K VEGSFPGD  IGGN F S+WD+ S ET+ASKRAIELNNGRAAQMGIL MMVHE+LSNQPYI NDL+GASYTFN
Sbjct:   94 MLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211

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BLAST of mRNA_H-elongata_contig84369.16050.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 3.210e-51
Identity = 83/118 (70.34%), Postives = 97/118 (82.20%), Query Frame = 0

Query:    1 MLSFKDDIAFADVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEGSFPGDCTIGGNVFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLVGASYTFN 118
            MLS   +++FAD+PNG+AA SKIPP G  QI   +G  EL V+K VEGSFPGD T GGN F S+WD  SEET+ SKRAIELNNGRAAQMGILA+MVHE+L+N+PYIINDL+GASYTFN
Sbjct:  101 MLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218

[Close]

BLAST of mRNA_H-elongata_contig84369.16050.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 167 bits (424), Expect = 8.750e-51
Identity = 82/118 (69.49%), Postives = 97/118 (82.20%), Query Frame = 0

Query:    1 MLSFKDDIAFADVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEGSFPGDCTIGGNVFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLVGASYTFN 118
            MLS   +++FAD+PNG+AA SKIPP G  QI   IG  EL V+K VEGSFPGD T+GGN F S+WD  SEET+ SKRAIELNNGRAAQMGILA+MVHE+L+N+PY+INDL+GASY FN
Sbjct:   65 MLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182

[Close]

BLAST of mRNA_H-elongata_contig84369.16050.1 vs. uniprot
Match: D8LJH9_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH9_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 2.690e-50
Identity = 79/106 (74.53%), Postives = 88/106 (83.02%), Query Frame = 0

Query:   13 VPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEGSFPGDCTIGGNVFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLVGASYTFN 118
            +PNG+AA SKIPPLG  QI+  IG  EL V+K VEGSFPGD TIGGN F + WD  SEETK SKRAIELNNGRAAQMGILAMM+HE++SNQPYIINDL+ A YTFN
Sbjct:    1 MPNGVAAISKIPPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFGAQWDKMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 106

[Close]

BLAST of mRNA_H-elongata_contig84369.16050.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 167 bits (423), Expect = 3.490e-50
Identity = 82/118 (69.49%), Postives = 97/118 (82.20%), Query Frame = 0

Query:    1 MLSFKDDIAFADVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEGSFPGDCTIGGNVFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLVGASYTFN 118
            MLS   +++FAD+PNG+AA SKIPP G  QI   IG  EL V+K VEGSFPGD T+GGN F S+WD  S ET+ASKRAIELNNGRAAQMGILA+MVHE+L+N+PY+INDL+GASY FN
Sbjct:   99 MLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig84369.16050.1 vs. uniprot

BLAST of mRNA_H-elongata_contig84369.16050.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
FCPE_MACPY	1.930e-70	88.98	Fucoxanthin-chlorophyll a-c binding protein E, chl...	[more]
FCPB_MACPY	1.350e-52	71.19	Fucoxanthin-chlorophyll a-c binding protein B, chl...	[more]
A0A6H5KBS3_9PHAE	1.370e-52	71.79	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5JHT6_9PHAE	6.140e-52	70.34	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JDS8_9PHAE	1.040e-51	69.49	LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
FCPF_MACPY	2.610e-51	72.03	Fucoxanthin-chlorophyll a-c binding protein F, chl...	[more]
A0A6H5KCX6_9PHAE	3.210e-51	70.34	LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI...	[more]
FCPD_MACPY	8.750e-51	69.49	Fucoxanthin-chlorophyll a-c binding protein D, chl...	[more]
D8LJH9_ECTSI	2.690e-50	74.53	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
FCPC_MACPY	3.490e-50	69.49	Fucoxanthin-chlorophyll a-c binding protein C, chl...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 10..98 e-value: 2.2E-12 score: 47.8
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 2..114 e-value: 7.0E-8 score: 34.5
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 15..102
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 15..102
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 8..108

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig84369	contig	H-elongata_contig84369:819..1175 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig84369.16050.1	mRNA_H-elongata_contig84369.16050.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig84369 808..1941 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig84369.16050.1 ID=prot_H-elongata_contig84369.16050.1|Name=mRNA_H-elongata_contig84369.16050.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
MLSFKDDIAFADVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEGSF
PGDCTIGGNVFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQL
SNQPYIINDLVGASYTFN*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR001344	Chloro_AB-bd_pln