mRNA_H-elongata_contig84369.16050.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84369.16050.1
Unique NamemRNA_H-elongata_contig84369.16050.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig84369.16050.1 vs. uniprot
Match: FCPE_MACPY (Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY)

HSP 1 Score: 224 bits (572), Expect = 7.320e-69
Identity = 108/121 (89.26%), Postives = 115/121 (95.04%), Query Frame = 3 
Query:    3 LPGMLSFKDDIAFADVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEGSFPGDCTIGGNVFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLVGASYTFN 365
            LPGMLSFK+++AFAD PNG+AAFSKIPPLGTLQIILAIG HELFVVKQVEGSFPGDCT GGN+FQSAWDN SEET+ASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDL GA+Y FN
Sbjct:   92 LPGMLSFKENLAFADSPNGVAAFSKIPPLGTLQIILAIGCHELFVVKQVEGSFPGDCTTGGNIFQSAWDNMSEETQASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYQFN 212
[Close]
BLAST of mRNA_H-elongata_contig84369.16050.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 179 bits (455), Expect = 2.890e-51
Identity = 87/121 (71.90%), Postives = 102/121 (84.30%), Query Frame = 3 
Query:    3 LPGMLSFKDDIAFADVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEGSFPGDCTIGGNVFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLVGASYTFN 365
            LPGMLS   +++FAD+PNG+AA SKIPP G  QI   IG  EL V+K VEGSFPGD T+GGN F ++WD  SEET+ASKRAIELNNGRAAQMGILA+MVHE+L+N+PY+INDLVGASYTFN
Sbjct:   97 LPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217
[Close]
BLAST of mRNA_H-elongata_contig84369.16050.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 1.290e-50
Identity = 86/121 (71.07%), Postives = 100/121 (82.64%), Query Frame = 3 
Query:    3 LPGMLSFKDDIAFADVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEGSFPGDCTIGGNVFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLVGASYTFN 365
            LPGMLS   D++FAD+PNG+AA SKIPP G  QI   +G  EL V+K VEGSFPGD T GGN F S+WD  SEET+ASKRAIELNNGRAAQMGILA+MVHE+L+N+PY+INDL+GA YTFN
Sbjct:  101 LPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221
[Close]
BLAST of mRNA_H-elongata_contig84369.16050.1 vs. uniprot
Match: A0A6H5KBS3_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS3_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 1.620e-50
Identity = 86/120 (71.67%), Postives = 97/120 (80.83%), Query Frame = 3 
Query:    6 PGMLSFKDDIAFADVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEGSFPGDCTIGGNVFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLVGASYTFN 365
            PG LS+   + FAD+PNG+AA SKIPPLG  QI+  IG  EL V+K VEGSFPGD TIGGN F + WD  SEETK SKRAIELNNGRAAQMGILAMM+HE++SNQPYIINDL+ A YTFN
Sbjct:   87 PGYLSYDAKLTFADMPNGVAAISKIPPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 206
[Close]
BLAST of mRNA_H-elongata_contig84369.16050.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 2.080e-50
Identity = 85/121 (70.25%), Postives = 100/121 (82.64%), Query Frame = 3 
Query:    3 LPGMLSFKDDIAFADVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEGSFPGDCTIGGNVFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLVGASYTFN 365
            LPGMLS   +++FAD+PNG+AA SKIPP G  QI   IG  EL V+K VEGSFPGD T+GGN F S+WD  SEET+ASKRAIELNNGRAAQMGILA+MVHE+L+N+PY+INDL+GA Y FN
Sbjct:   61 LPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181
[Close]
BLAST of mRNA_H-elongata_contig84369.16050.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 176 bits (446), Expect = 5.270e-50
Identity = 88/121 (72.73%), Postives = 99/121 (81.82%), Query Frame = 3 
Query:    3 LPGMLSFKDDIAFADVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEGSFPGDCTIGGNVFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLVGASYTFN 365
            LPGMLS   +++FAD+PNG+AA SKIPP G  QI   IG  EL V+K VEGSFPGD  IGGN F S+WD+ S ET+ASKRAIELNNGRAAQMGIL MMVHE+LSNQPYI NDL+GASYTFN
Sbjct:   91 LPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211
[Close]
BLAST of mRNA_H-elongata_contig84369.16050.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 6.520e-50
Identity = 86/121 (71.07%), Postives = 100/121 (82.64%), Query Frame = 3 
Query:    3 LPGMLSFKDDIAFADVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEGSFPGDCTIGGNVFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLVGASYTFN 365
            LPGMLS   +++FAD+PNG+AA SKIPP G  QI   +G  EL V+K VEGSFPGD T GGN F S+WD  SEET+ SKRAIELNNGRAAQMGILA+MVHE+L+N+PYIINDL+GASYTFN
Sbjct:   98 LPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218
[Close]
BLAST of mRNA_H-elongata_contig84369.16050.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 174 bits (440), Expect = 1.690e-49
Identity = 85/121 (70.25%), Postives = 100/121 (82.64%), Query Frame = 3 
Query:    3 LPGMLSFKDDIAFADVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEGSFPGDCTIGGNVFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLVGASYTFN 365
            LPGMLS   +++FAD+PNG+AA SKIPP G  QI   IG  EL V+K VEGSFPGD T+GGN F S+WD  SEET+ SKRAIELNNGRAAQMGILA+MVHE+L+N+PY+INDL+GASY FN
Sbjct:   62 LPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182
[Close]
BLAST of mRNA_H-elongata_contig84369.16050.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 173 bits (439), Expect = 6.760e-49
Identity = 85/121 (70.25%), Postives = 100/121 (82.64%), Query Frame = 3 
Query:    3 LPGMLSFKDDIAFADVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEGSFPGDCTIGGNVFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLVGASYTFN 365
            LPGMLS   +++FAD+PNG+AA SKIPP G  QI   IG  EL V+K VEGSFPGD T+GGN F S+WD  S ET+ASKRAIELNNGRAAQMGILA+MVHE+L+N+PY+INDL+GASY FN
Sbjct:   96 LPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216
[Close]
BLAST of mRNA_H-elongata_contig84369.16050.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 9.210e-49
Identity = 86/121 (71.07%), Postives = 101/121 (83.47%), Query Frame = 3 
Query:    3 LPGMLSFKDDIAFADVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEGSFPGDCTIGGNVFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLVGASYTFN 365
            LPGMLS   +++FAD+PNG+AA SKIPP G  QI   IG  EL V+K VEGSFPGD T+GGN F S+WD  SEET+ASKRAIELNNGRAAQMGILA+MVHE+L+N+PY+INDL+GA YTFN
Sbjct:  257 LPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 377
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84369.16050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
FCPE_MACPY7.320e-6989.26Fucoxanthin-chlorophyll a-c binding protein E, chl... [more]
FCPB_MACPY2.890e-5171.90Fucoxanthin-chlorophyll a-c binding protein B, chl... [more]
A0A6H5JHT6_9PHAE1.290e-5071.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBS3_9PHAE1.620e-5071.67LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JDS8_9PHAE2.080e-5070.25LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
FCPF_MACPY5.270e-5072.73Fucoxanthin-chlorophyll a-c binding protein F, chl... [more]
A0A6H5KCX6_9PHAE6.520e-5071.07LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI... [more]
FCPD_MACPY1.690e-4970.25Fucoxanthin-chlorophyll a-c binding protein D, chl... [more]
FCPC_MACPY6.760e-4970.25Fucoxanthin-chlorophyll a-c binding protein C, chl... [more]
D8LNK6_ECTSI9.210e-4971.07Light harvesting complex protein n=1 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84369contigH-elongata_contig84369:808..1941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score224.9
Seed ortholog evalue1.9e-56
Seed eggNOG ortholog2880.D7FNP8
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2CDPH@1,2S3EU@2759
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-07_001470.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1134
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84369.16050.1prot_H-elongata_contig84369.16050.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84369 819..1175 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931248.934007-UTR-H-elongata_contig84369:807..8181622931248.934007-UTR-H-elongata_contig84369:807..818Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84369 808..818 +
1691679759.0469813-UTR-H-elongata_contig84369:807..8181691679759.0469813-UTR-H-elongata_contig84369:807..818Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84369 808..818 +
1622931248.973077-UTR-H-elongata_contig84369:1175..19411622931248.973077-UTR-H-elongata_contig84369:1175..1941Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84369 1176..1941 +
1691679759.0708125-UTR-H-elongata_contig84369:1175..19411691679759.0708125-UTR-H-elongata_contig84369:1175..1941Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84369 1176..1941 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931248.9533129-CDS-H-elongata_contig84369:818..11751622931248.9533129-CDS-H-elongata_contig84369:818..1175Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84369 819..1175 +
1691679759.0599623-CDS-H-elongata_contig84369:818..11751691679759.0599623-CDS-H-elongata_contig84369:818..1175Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84369 819..1175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84369.16050.1

>prot_H-elongata_contig84369.16050.1 ID=prot_H-elongata_contig84369.16050.1|Name=mRNA_H-elongata_contig84369.16050.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
MLSFKDDIAFADVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEGSF
PGDCTIGGNVFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQL
SNQPYIINDLVGASYTFN*
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mRNA from alignment at H-elongata_contig84369:808..1941+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84369.16050.1 ID=mRNA_H-elongata_contig84369.16050.1|Name=mRNA_H-elongata_contig84369.16050.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1134bp|location=Sequence derived from alignment at H-elongata_contig84369:808..1941+ (Himanthalia elongata Himel1 dioecious)
GCCTGCCTGGCATGTTGTCTTTCAAAGACGACATCGCGTTTGCGGATGTG
CCCAACGGCCTGGCGGCATTCTCAAAGATCCCCCCGCTTGGCACCCTGCA
GATCATCCTAGCGATCGGCGTGCACGAGCTATTCGTAGTGAAGCAGGTGG
AGGGCTCCTTCCCCGGGGACTGTACCATCGGCGGAAACGTCTTCCAGTCC
GCGTGGGACAACTTCTCGGAGGAAACCAAGGCGTCGAAGCGTGCGATCGA
ACTGAACAACGGCCGCGCTGCGCAAATGGGCATCCTTGCCATGATGGTGC
ACGAGCAGCTCTCCAATCAGCCCTACATTATCAACGACCTTGTCGGTGCT
TCTTACACGTTCAACTGAAGCGCCCGCGGCGGCGGCGGGTGTGATTTGAG
TGGACATCGTAGTGGCGGGAAATGCGAATTTTCCTCATCCACCCTCCCCC
CTCCACCAGCGTTCACTTTTCCAAGTTTTGGGGTCGGATCGGGTATGGAA
GAGTAGTAAATAACGAGGTAATATCGTGTCATAGAAGCAAGCCTGCTCGT
GGATTATTTGGTGTGGTAGACTGGCGAATGACATGTACGCCACCGCAGAT
AGGGTACCTTAAGTTTTTCAGCGCGATAGCGTTTGAAGATATCTTCGATG
TCTACATGTTTAAGCCCAGTGCATCTGAGCCAGGAGTTTCATCGGGATCT
AGTGCTAGCTCGGCAAATCTAATACGATGCATGCGACCTGCCCGGTTGCT
GTCTCGTGGTCGAGGTTTCTGCTGACCGGTCGATTGGGTTTCCACAGAGG
TTCGATCGCCTACGTAAGGCGTCTTGTTCTTCTGAGTGCCGTTCTCACTA
AGAGATAAACGCAATCTGCGCTTACAGCTTAACGAAGGGGCGCGCAATCC
TTTGTAGTAGAACGGAGTACGTCATCGTAAATATAATGTGCAACATTCGA
TGTAATCTGGCATCCGGGTGGATAAATGGTGAACCATATAACTCGGGCAA
GAACGGCCAGAATTCATCGCTTTTTATTTCATGTGTAGTCGTTAAAACAA
AATGCAATTTCTGGTTACCTGACGAATTCCCTACACGTGAGCGTACCACC
TGTCATTGTTGTTGTATTGTGCTGCTATGAAATA
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Coding sequence (CDS) from alignment at H-elongata_contig84369:808..1941+

>mRNA_H-elongata_contig84369.16050.1 ID=mRNA_H-elongata_contig84369.16050.1|Name=mRNA_H-elongata_contig84369.16050.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig84369:808..1941+ (Himanthalia elongata Himel1 dioecious)
ATGTTGTCTTTCAAAGACGACATCGCGTTTGCGGATGTGCCCAACGGCCT
GGCGGCATTCTCAAAGATCCCCCCGCTTGGCACCCTGCAGATCATCCTAG
CGATCGGCGTGCACGAGCTATTCGTAGTGAAGCAGGTGGAGGGCTCCTTC
CCCGGGGACTGTACCATCGGCGGAAACGTCTTCCAGTCCGCGTGGGACAA
CTTCTCGGAGGAAACCAAGGCGTCGAAGCGTGCGATCGAACTGAACAACG
GCCGCGCTGCGCAAATGGGCATCCTTGCCATGATGGTGCACGAGCAGCTC
TCCAATCAGCCCTACATTATCAACGACCTTGTCGGTGCTTCTTACACGTT
CAACTGAATGTTGTCTTTCAAAGACGACATCGCGTTTGCGGATGTGCCCA
ACGGCCTGGCGGCATTCTCAAAGATCCCCCCGCTTGGCACCCTGCAGATC
ATCCTAGCGATCGGCGTGCACGAGCTATTCGTAGTGAAGCAGGTGGAGGG
CTCCTTCCCCGGGGACTGTACCATCGGCGGAAACGTCTTCCAGTCCGCGT
GGGACAACTTCTCGGAGGAAACCAAGGCGTCGAAGCGTGCGATCGAACTG
AACAACGGCCGCGCTGCGCAAATGGGCATCCTTGCCATGATGGTGCACGA
GCAGCTCTCCAATCAGCCCTACATTATCAACGACCTTGTCGGTGCTTCTT
ACACGTTCAACTGA
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