mRNA_H-elongata_contig84360.16049.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84360.16049.1
Unique NamemRNA_H-elongata_contig84360.16049.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig84360.16049.1 vs. uniprot
Match: A0A6H5L192_9PHAE (HOOK domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L192_9PHAE)

HSP 1 Score: 232 bits (591), Expect = 6.880e-67
Identity = 131/205 (63.90%), Postives = 163/205 (79.51%), Query Frame = 1 
Query:    1 QFEKYRETHTVDDDTYNKDADDWEHNLALQKKQIADLQRQLGELSKEKRRVEREKTYYWGQAEELRMQAAXXXXXXDSSKDADHAQLVEQTKELIEENRELRQRLQKESNCAGPGGISTRSGGRWGSSGVAAMRAEHESEVNALKEEKQDMLMKYHATAAKMHEQDRRCVELTEEKEEMQAQLVALQLTCERQKRKLENPAAAAA 615
            +F +YRETHTVDD +YN+D D WE ++A +KK I DLQ QL  L K+KR++EREKT+YWG+AEELRM AA      D S+DADH QLVEQT+ELIEENRELRQR Q   N  G G +STRSGGRWGSSGVAAMRAEHE+E+ ALKEEKQD+L+KYHAT+AK++E+ +RC EL  E EE +AQ V+LQL  +RQ++KL++  A +A
Sbjct:  860 EFARYRETHTVDDISYNQDVDQWEMSIATKKKMIGDLQGQLRALEKDKRKLEREKTFYWGRAEELRMSAAAGGRA-DPSRDADHLQLVEQTRELIEENRELRQRAQ--DNSDGGGAMSTRSGGRWGSSGVAAMRAEHEAEMTALKEEKQDLLLKYHATSAKLNEEQQRCAELNGEVEEARAQFVSLQLVNKRQEKKLQDSIATSA 1061
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84360.16049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L192_9PHAE6.880e-6763.90HOOK domain-containing protein n=2 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84360contigH-elongata_contig84360:169..2182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score225.7
Seed ortholog evalue2e-56
Seed eggNOG ortholog2880.D7G849
EggNOG OGs2APQW@1,2RZH8@2759
Ec32 ortholog descriptionHook-related protein family
Ec32 orthologEc-12_001500.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size627
Cds size627
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84360.16049.1prot_H-elongata_contig84360.16049.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84360 169..2182 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931248.7772634-CDS-H-elongata_contig84360:168..2341622931248.7772634-CDS-H-elongata_contig84360:168..234Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84360 169..234 -
1691679759.0010717-CDS-H-elongata_contig84360:168..2341691679759.0010717-CDS-H-elongata_contig84360:168..234Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84360 169..234 -
1622931248.793548-CDS-H-elongata_contig84360:603..8431622931248.793548-CDS-H-elongata_contig84360:603..843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84360 604..843 -
1691679759.0179482-CDS-H-elongata_contig84360:603..8431691679759.0179482-CDS-H-elongata_contig84360:603..843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84360 604..843 -
1622931248.8163464-CDS-H-elongata_contig84360:1423..16061622931248.8163464-CDS-H-elongata_contig84360:1423..1606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84360 1424..1606 -
1691679759.027588-CDS-H-elongata_contig84360:1423..16061691679759.027588-CDS-H-elongata_contig84360:1423..1606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84360 1424..1606 -
1622931248.8346395-CDS-H-elongata_contig84360:2044..21821622931248.8346395-CDS-H-elongata_contig84360:2044..2182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84360 2045..2182 -
1691679759.037111-CDS-H-elongata_contig84360:2044..21821691679759.037111-CDS-H-elongata_contig84360:2044..2182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84360 2045..2182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84360.16049.1

>prot_H-elongata_contig84360.16049.1 ID=prot_H-elongata_contig84360.16049.1|Name=mRNA_H-elongata_contig84360.16049.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=209bp
QFEKYRETHTVDDDTYNKDADDWEHNLALQKKQIADLQRQLGELSKEKRR
VEREKTYYWGQAEELRMQAAAGGGGGDSSKDADHAQLVEQTKELIEENRE
LRQRLQKESNCAGPGGISTRSGGRWGSSGVAAMRAEHESEVNALKEEKQD
MLMKYHATAAKMHEQDRRCVELTEEKEEMQAQLVALQLTCERQKRKLENP
AAAAAVAIP
back to top

mRNA from alignment at H-elongata_contig84360:169..2182-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84360.16049.1 ID=mRNA_H-elongata_contig84360.16049.1|Name=mRNA_H-elongata_contig84360.16049.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2014bp|location=Sequence derived from alignment at H-elongata_contig84360:169..2182- (Himanthalia elongata Himel1 dioecious)
CAGTTTGAGAAATACCGCGAGACTCACACGGTGGACGATGACACCTACAA
TAAGGACGCGGATGACTGGGAGCATAACCTTGCTTTACAAAAGAAGCAAA
TTGCCGACCTTCAACGCCAGCTGGGGGAGCTTAGCAAGGTTTGATTTTTT
CTGTCTGGAACGGTGGTTGGAGGGGGGGGCGGTGGGCATACACCTACATT
CATCAAACTACATCGAGAATAGATTCAACATTTAAACCTATGGTCCTCTT
GATTCAACAACCTCTCTTGAAGTCAGCAGGGGAGCAAATGTGGGGAAATG
ACCAAAATACAGACGCTGTTCACTACTTTACACAGGACAATGCATACTTC
GTACATTTTTTTTATAATATAATATACTAAAACATAGAACTTTAAAACAA
AGAGAGGAGGAAAATTGCACATTCGATTTTGTTTTTTGGGCTGAGGGTGT
TCCGTTGCAAACAGAGTCTAGTTCCCCCCTTTCGCCCTCCGATCACCTTA
CCTCGGGGGCGCTTCTGAACAAGCTTCCACTTTTGCGACCGGTGCTCTTG
GCTCACGTTGTGCGGCTTCACTCTAGGAGAAACGACGGGTGGAACGGGAA
AAGACATACTACTGGGGACAGGCCGAAGAGCTCAGGATGCAGGCGGCCGC
GGGTGGAGGCGGTGGGGACTCGAGCAAGGACGCAGACCATGCGCAGCTGG
TTGAGCAGACCAAGGAACTCATCGAGGAGAACCGCGAGCTCAGACAGAGA
CTACAGAAGGTGCGTTAGATACCATCGGCCCATGGGTTGCTGCAGGACGA
GTTTTTTTTGTGTTATCATACACGGGCGATGTGGATGAGAGCCAGCCTCA
GGATGCAAAACATGGTACATGTACTGTAGATAGGGATATAAAAGGAATCG
AAGCAAAGATATGCGAATCGCAGGCTTCGCTTGGCATCATGGCCACAACG
GTTTATTCCTACGGTCAAGTATTAACTGACTTGGGCATGGGTACTCTTTT
TCGGCGTACCTTGAGCGCGCTGATGATCAAGCGACCCAAGATGAGGTAAG
AGCGGGCGTCCCATGCTCTTCTCCGCGATTCGATACCCCTCAGCTCACCT
TACATCACGTTTGTTGCTTCTTTTGACTTCTCATCTCCATTCACACTTTA
TCTCGATCTTAAGAGTGTTTTCCATCTCGCGTTCCATGCCGCTAACTATG
TTCAAACACCCAAACCGGCATTTTAAAACCGGTCTCAATGTTAGCTGTTA
GCACCTTCGCACCACGCTTCACATGCTTCATTTATTTCCATGGTCTCAAA
ATCCACCCCTCCCCCCTTCTTTTTCCCCTTAACAAAAAGGAATCGAACTG
CGCCGGACCTGGCGGTATCAGCACGCGGAGCGGGGGGCGTTGGGGTAGCA
GCGGCGTGGCGGCCATGCGGGCGGAACACGAGTCCGAGGTCAACGCCCTC
AAAGAAGAGAAGCAAGACATGCTGATGAAGTATCACGCCACGGCGGCCAA
GATGCACGAACAAGACCGACGGTGCGTCGAGCTAACCGAAGAGAAGGAGG
AGATGCAGGCCCAGCTCGTCGCGCTTCAGGTATGTCATAGCTCGTTGTGA
CCAGCGGCACTCTTCGGTGCGGTGCCGTGCGGTGCGTTATTGTACGGGGT
AAGGTACACTAGCGGATCCATGAGGTGCGGTCGAGCCCATGCACATGTTG
GGGAAGGGTCGATTGGATCATGCAATAGTGAAGCATGAGGTCGTAAAATC
CTTTGACGAACCGCCTGTTTTTACAGTTCGTCCGATCCTTCCGTGGCGAT
GCCGCCCTTGCTCGCGCTCGAGGGTTGGTCAGTCCGCGTCGTTTTTGGTG
ACGTGCCCAACCCACTCGAGTTCACTCATCGAACATTTCTTTCTTCGTTC
AACCATGCCCATACATCATAAATCGCGTGTGCATCTCGTATCTTACAGCT
CACATGCGAACGTCAAAAAAGAAAGCTGGAAAACCCTGCCGCCGCGGCTG
CGGTCGCTATCCCA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig84360:169..2182-

>mRNA_H-elongata_contig84360.16049.1 ID=mRNA_H-elongata_contig84360.16049.1|Name=mRNA_H-elongata_contig84360.16049.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1254bp|location=Sequence derived from alignment at H-elongata_contig84360:169..2182- (Himanthalia elongata Himel1 dioecious)
CAGTTTGAGAAATACCGCGAGACTCACACGGTGGACGATGACACCTACAA
TAAGGACGCGGATGACTGGGAGCATAACCTTGCTTTACAAAAGAAGCAAA
TTGCCGACCTTCAACGCCAGCTGGGGGAGCTTAGCAAGCAGTTTGAGAAA
TACCGCGAGACTCACACGGTGGACGATGACACCTACAATAAGGACGCGGA
TGACTGGGAGCATAACCTTGCTTTACAAAAGAAGCAAATTGCCGACCTTC
AACGCCAGCTGGGGGAGCTTAGCAAGGAGAAACGACGGGTGGAACGGGAA
AAGACATACTACTGGGGACAGGCCGAAGAGCTCAGGATGCAGGCGGCCGC
GGGTGGAGGCGGTGGGGACTCGAGCAAGGACGCAGACCATGCGCAGCTGG
TTGAGCAGACCAAGGAACTCATCGAGGAGAACCGCGAGCTCAGACAGAGA
CTACAGAAGGAGAAACGACGGGTGGAACGGGAAAAGACATACTACTGGGG
ACAGGCCGAAGAGCTCAGGATGCAGGCGGCCGCGGGTGGAGGCGGTGGGG
ACTCGAGCAAGGACGCAGACCATGCGCAGCTGGTTGAGCAGACCAAGGAA
CTCATCGAGGAGAACCGCGAGCTCAGACAGAGACTACAGAAGGAATCGAA
CTGCGCCGGACCTGGCGGTATCAGCACGCGGAGCGGGGGGCGTTGGGGTA
GCAGCGGCGTGGCGGCCATGCGGGCGGAACACGAGTCCGAGGTCAACGCC
CTCAAAGAAGAGAAGCAAGACATGCTGATGAAGTATCACGCCACGGCGGC
CAAGATGCACGAACAAGACCGACGGTGCGTCGAGCTAACCGAAGAGAAGG
AGGAGATGCAGGCCCAGCTCGTCGCGCTTCAGGAATCGAACTGCGCCGGA
CCTGGCGGTATCAGCACGCGGAGCGGGGGGCGTTGGGGTAGCAGCGGCGT
GGCGGCCATGCGGGCGGAACACGAGTCCGAGGTCAACGCCCTCAAAGAAG
AGAAGCAAGACATGCTGATGAAGTATCACGCCACGGCGGCCAAGATGCAC
GAACAAGACCGACGGTGCGTCGAGCTAACCGAAGAGAAGGAGGAGATGCA
GGCCCAGCTCGTCGCGCTTCAGCTCACATGCGAACGTCAAAAAAGAAAGC
TGGAAAACCCTGCCGCCGCGGCTGCGGTCGCTATCCCACTCACATGCGAA
CGTCAAAAAAGAAAGCTGGAAAACCCTGCCGCCGCGGCTGCGGTCGCTAT
CCCA
back to top