mRNA_H-elongata_contig84344.16048.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84344.16048.1
Unique NamemRNA_H-elongata_contig84344.16048.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig84344.16048.1 vs. uniprot
Match: D7FZR9_ECTSI (Transmembrane amino acid transporter protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR9_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.350e-19
Identity = 47/96 (48.96%), Postives = 61/96 (63.54%), Query Frame = 1 
Query:    1 EELDYTVLAGRMLGRHGPAVVDLSIVILNFGANCSYIIIVGGLASSMLEEWSTSFLTPEAVDVAIEWWNSFYFVTPVMVLFFVLPPCLVRHYSNLR 288
            +++++  LA   +G  GP  VD +IV+ NFG  CSY+I+VG L  S+L EW        A DV   WW SF  VTPVM + FV PPCL+RH+SNLR
Sbjct:  183 DDIEFAQLARETVGPLGPLAVDAAIVLCNFGDVCSYVILVGSLTGSLLLEWFGG----TASDV---WWASFSVVTPVMAVLFVFPPCLIRHFSNLR 271
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BLAST of mRNA_H-elongata_contig84344.16048.1 vs. uniprot
Match: A0A6H5KC39_9PHAE (Aa_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC39_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.490e-19
Identity = 47/96 (48.96%), Postives = 61/96 (63.54%), Query Frame = 1 
Query:    1 EELDYTVLAGRMLGRHGPAVVDLSIVILNFGANCSYIIIVGGLASSMLEEWSTSFLTPEAVDVAIEWWNSFYFVTPVMVLFFVLPPCLVRHYSNLR 288
            +++++  LA   +G  GP  VD +IV+ NFG  CSY+I+VG L  S+L EW        A DV   WW SF  VTPVM + FV PPCL+RH+SNLR
Sbjct:  183 DDIEFAQLARETVGPLGPLAVDAAIVLCNFGDVCSYVILVGSLTGSLLLEWFGG----TASDV---WWASFSVVTPVMAVLFVFPPCLIRHFSNLR 271
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BLAST of mRNA_H-elongata_contig84344.16048.1 vs. uniprot
Match: A0A6V1XUJ0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1XUJ0_HETAK)

HSP 1 Score: 59.3 bits (142), Expect = 3.450e-8
Identity = 34/92 (36.96%), Postives = 50/92 (54.35%), Query Frame = 1 
Query:    7 LDYTVLAGRMLGRHGPAVVDLSIVILNFGANCSYIIIVGGLASSMLEEWSTSFLTPEAVDVAIEWWNSFYFVTPVMVLFFVLPPCLVRHYSN 282
            L +T +A    GR G  +VD SIV+ NFGA  SY++++ G  + +LE W+           + +W+ S  F  P+  LF VLP CL R Y +
Sbjct:  122 LGFTEVANLAFGRRGDLLVDWSIVVGNFGALLSYMVVISGELTVLLEGWTGE---------SGKWYTSELFNLPLATLFLVLPFCLQRFYGH 204
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BLAST of mRNA_H-elongata_contig84344.16048.1 vs. uniprot
Match: A0A7S3HJ43_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJ43_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 7.810e-7
Identity = 31/93 (33.33%), Postives = 50/93 (53.76%), Query Frame = 1 
Query:    7 LDYTVLAGRMLGRHGPAVVDLSIVILNFGANCSYIIIVGGLASSMLEEWSTSFLTPEAVDVAIEWWNSFYFVTPVMVLFFVLPPCLVRHYSNL 285
            L+Y+ LA +     G  +VD++I++L FG+   YI++VG L+S +L  W  S +     D+         F T + V  FV P C+ RH+ +L
Sbjct:  128 LEYSGLAKKAFPAFGELMVDIAIIVLTFGSQLGYILVVGTLSSDLLRSWGCSSVA--CGDM---------FTTIISVAVFVTPVCMYRHFGHL 209
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84344.16048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FZR9_ECTSI1.350e-1948.96Transmembrane amino acid transporter protein n=1 T... [more]
A0A6H5KC39_9PHAE1.490e-1948.96Aa_trans domain-containing protein n=1 Tax=Ectocar... [more]
A0A6V1XUJ0_HETAK3.450e-836.96Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3HJ43_9STRA7.810e-733.33Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84344contigH-elongata_contig84344:2469..2756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue3.9e-15
Seed eggNOG ortholog2880.D7FZR9
KEGG koko:K14996
KEGG TC2.A.18.6
EggNOG free text desc.amino acid
EggNOG OGsCOG0814@1,KOG1305@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Exons1
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931248.7128475-CDS-H-elongata_contig84344:2468..27561622931248.7128475-CDS-H-elongata_contig84344:2468..2756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84344 2469..2756 +
1691679758.9849615-CDS-H-elongata_contig84344:2468..27561691679758.9849615-CDS-H-elongata_contig84344:2468..2756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84344 2469..2756 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84344.16048.1prot_H-elongata_contig84344.16048.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84344 2469..2756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84344.16048.1

>prot_H-elongata_contig84344.16048.1 ID=prot_H-elongata_contig84344.16048.1|Name=mRNA_H-elongata_contig84344.16048.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
EELDYTVLAGRMLGRHGPAVVDLSIVILNFGANCSYIIIVGGLASSMLEE
WSTSFLTPEAVDVAIEWWNSFYFVTPVMVLFFVLPPCLVRHYSNLR
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mRNA from alignment at H-elongata_contig84344:2469..2756+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84344.16048.1 ID=mRNA_H-elongata_contig84344.16048.1|Name=mRNA_H-elongata_contig84344.16048.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=288bp|location=Sequence derived from alignment at H-elongata_contig84344:2469..2756+ (Himanthalia elongata Himel1 dioecious)
GAGGAGCTCGACTACACCGTGTTGGCGGGGCGCATGCTGGGGCGTCATGG
ACCCGCCGTCGTGGACTTATCGATTGTGATCTTGAACTTCGGCGCCAATT
GCTCGTATATCATTATCGTGGGGGGCTTGGCGTCCTCCATGCTAGAGGAG
TGGAGTACATCGTTCCTGACTCCGGAAGCTGTAGATGTCGCCATCGAATG
GTGGAATAGCTTCTACTTTGTGACCCCAGTAATGGTACTGTTCTTCGTTC
TTCCCCCTTGCCTTGTGAGGCACTACAGCAACCTCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig84344:2469..2756+

>mRNA_H-elongata_contig84344.16048.1 ID=mRNA_H-elongata_contig84344.16048.1|Name=mRNA_H-elongata_contig84344.16048.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig84344:2469..2756+ (Himanthalia elongata Himel1 dioecious)
GAGGAGCTCGACTACACCGTGTTGGCGGGGCGCATGCTGGGGCGTCATGG
ACCCGCCGTCGTGGACTTATCGATTGTGATCTTGAACTTCGGCGCCAATT
GCTCGTATATCATTATCGTGGGGGGCTTGGCGTCCTCCATGCTAGAGGAG
TGGAGTACATCGTTCCTGACTCCGGAAGCTGTAGATGTCGCCATCGAATG
GTGGAATAGCTTCTACTTTGTGACCCCAGTAATGGTACTGTTCTTCGTTC
TTCCCCCTTGCCTTGTGAGGCACTACAGCAACCTCAGGGAGGAGCTCGAC
TACACCGTGTTGGCGGGGCGCATGCTGGGGCGTCATGGACCCGCCGTCGT
GGACTTATCGATTGTGATCTTGAACTTCGGCGCCAATTGCTCGTATATCA
TTATCGTGGGGGGCTTGGCGTCCTCCATGCTAGAGGAGTGGAGTACATCG
TTCCTGACTCCGGAAGCTGTAGATGTCGCCATCGAATGGTGGAATAGCTT
CTACTTTGTGACCCCAGTAATGGTACTGTTCTTCGTTCTTCCCCCTTGCC
TTGTGAGGCACTACAGCAACCTCAGG
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