mRNA_H-elongata_contig84277.16041.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig84277.16041.1 vs. uniprot
Match: D8LSU0_ECTSI (Similar to helicase, lymphoid-specific isoform 9 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU0_ECTSI) HSP 1 Score: 358 bits (920), Expect = 4.980e-115 Identity = 180/215 (83.72%), Postives = 197/215 (91.63%), Query Frame = 1
Query: 1 VMKEIKGYSDFDIHQICSTFDSLRHLCLPEETLFTSAKMSRLRDLLPKLISQGHRILLFSQWTRLLDLFEVLLQDSMGLKFCRLDGSTPVSERKALIDRFGADTSIPVFLLSTRAGGLGINLTCADTVILHDVDFNPENDRQAEDRCHRIGQTKPVTVIKMVAEGTVDEDIYNMGERKKELNKSVLNDAASK-DKDTASTISGILKRAIQIHIAS 642
V KE+ GYSDFD+HQ+CS FDSL+HLCL EETLFTSAKM RLR LLP+L+S+GHRILLFSQWTRLLDL EVLL +SMG+ FCRLDGSTPVSERKALID+FGADTSIPVFLLSTRAGGLGINLT ADTVILHDVDFNPENDRQAEDRCHRIGQTKPVTVI+MVA GTVDEDIY MGERKKE+N+ VLND+ K +KD ASTISGILKRAIQ+H+ S
Sbjct: 728 VAKEVSGYSDFDLHQVCSGFDSLKHLCLSEETLFTSAKMERLRALLPQLVSEGHRILLFSQWTRLLDLLEVLLGESMGMTFCRLDGSTPVSERKALIDKFGADTSIPVFLLSTRAGGLGINLTAADTVILHDVDFNPENDRQAEDRCHRIGQTKPVTVIRMVAAGTVDEDIYLMGERKKEVNQRVLNDSGKKGEKDAASTISGILKRAIQVHVGS 942
BLAST of mRNA_H-elongata_contig84277.16041.1 vs. uniprot
Match: A0A6H5KRD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRD4_9PHAE) HSP 1 Score: 354 bits (909), Expect = 1.970e-111 Identity = 180/219 (82.19%), Postives = 197/219 (89.95%), Query Frame = 1
Query: 1 VMKEIKGYSDFDIHQICSTFDSLRHLCLPEETLFTSAKMSRLRDLLPKLISQGHRILLFSQWTRLLDLFE----VLLQDSMGLKFCRLDGSTPVSERKALIDRFGADTSIPVFLLSTRAGGLGINLTCADTVILHDVDFNPENDRQAEDRCHRIGQTKPVTVIKMVAEGTVDEDIYNMGERKKELNKSVLNDAASK-DKDTASTISGILKRAIQIHIAS 642
V KE+ GYSDFD+HQ+CS FDSL+HLCL EETLFTSAKM RLR LLP+L+S+GHR+LLFSQWTRLLDL E VLL DSMG+ FCRLDGSTPVSERKALID+FGADTSIPVFLLSTRAGGLGINLT ADTVILHDVDFNPENDRQAEDRCHRIGQTKPVTVI+MVA GTVDEDIY MGERKKE+N+ VLND+ K +KD ASTISGILKRAIQ+H+ S
Sbjct: 992 VAKEVSGYSDFDLHQVCSGFDSLKHLCLSEETLFTSAKMERLRTLLPQLVSEGHRVLLFSQWTRLLDLLEASAHVLLGDSMGMTFCRLDGSTPVSERKALIDKFGADTSIPVFLLSTRAGGLGINLTAADTVILHDVDFNPENDRQAEDRCHRIGQTKPVTVIRMVAAGTVDEDIYLMGERKKEVNQRVLNDSGKKGEKDAASTISGILKRAIQVHVGS 1210
BLAST of mRNA_H-elongata_contig84277.16041.1 vs. uniprot
Match: A0A7S3H645_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H645_9STRA) HSP 1 Score: 256 bits (654), Expect = 2.380e-81 Identity = 129/188 (68.62%), Postives = 153/188 (81.38%), Query Frame = 1
Query: 1 VMKEIKGYSDFDIHQICSTFDSLRHLCLPEETLFTSAKMSRLRDLLPKLISQGHRILLFSQWTRLLDLFEVLLQDSMGLKFCRLDGSTPVSERKALIDRFGADTSIPVFLLSTRAGGLGINLTCADTVILHDVDFNPENDRQAEDRCHRIGQTKPVTVIKMVAEGTVDEDIYNMGERKKELNKSVLND 564
V EI +SDFDIHQ+C +D+L L L E+ L+ S KM L+D LPKL S GHR+L+FSQWTRLLDL EVLLQD + L + RLDGSTPV +R+ LID F DTSIPVFLLST+AGGLGINLT ADTV+LHD+DFNPEND+QAEDRCHRIGQTKPVTV K+ A+ +VDEDI+ MGERK +L+K+VL D
Sbjct: 127 VQDEINTFSDFDIHQLCLEYDALNSLQLTEDVLYDSPKMHWLKDNLPKLKSDGHRVLVFSQWTRLLDLLEVLLQD-INLTYLRLDGSTPVKQRQDLIDTFNTDTSIPVFLLSTKAGGLGINLTAADTVVLHDLDFNPENDKQAEDRCHRIGQTKPVTVYKLFAKDSVDEDIFEMGERKSKLSKAVLQD 313
BLAST of mRNA_H-elongata_contig84277.16041.1 vs. uniprot
Match: A0A835Z3Y7_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Y7_9STRA) HSP 1 Score: 253 bits (646), Expect = 4.820e-74 Identity = 133/214 (62.15%), Postives = 166/214 (77.57%), Query Frame = 1
Query: 1 VMKEIKGYSDFDIHQICSTFDSLRHLCLPEETLFTSAKMSRLRDLLPKLISQGHRILLFSQWTRLLDLFEVLLQDSMGLKFCRLDGSTPVSERKALIDRFGADTSIPVFLLSTRAGGLGINLTCADTVILHDVDFNPENDRQAEDRCHRIGQTKPVTVIKMVAEGTVDEDIYNMGERKKELNKSVLNDAASKDKDT-----ASTISGILKRAIQ 627
V KE++ +SD+D+HQ+CS F +L L L ++ LF+SAKM RLR LLP+L +QGHR+LLFSQWTR+LDL EV L + +G+++ RLDGSTPV +R+ALI F AD I VFLLSTRAGGLGINLT ADTVILHD+DFNPEND+QAEDR IGQTKPV VIK+VA+GTVDEDIY +G RK ++ +VL++ A K TI+GIL RAI+
Sbjct: 950 VRKELETFSDYDMHQLCSHFPALEDLTLQQDALFSSAKMVRLRGLLPELQAQGHRVLLFSQWTRILDLMEVFLSEVLGMRYTRLDGSTPVQQRQALIQGFAADPGIAVFLLSTRAGGLGINLTSADTVILHDLDFNPENDKQAEDR---IGQTKPVRVIKLVAQGTVDEDIYRLGARKASVSAAVLDEVAPGKKGAQGDADGGTIAGILNRAIR 1160
BLAST of mRNA_H-elongata_contig84277.16041.1 vs. uniprot
Match: A0A7S3US29_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3US29_HETAK) HSP 1 Score: 231 bits (588), Expect = 1.720e-72 Identity = 115/193 (59.59%), Postives = 145/193 (75.13%), Query Frame = 1
Query: 1 VMKEIKGYSDFDIHQICSTFDSLRHLCLPEETLFTSAKMSRLRDLLPKLISQGHRILLFSQWTRLLDLFEVLLQDSMGLKFCRLDGSTPVSERKALIDRFGADTSIPVFLLSTRAGGLGINLTCADTVILHDVDFNPENDRQAEDRCHRIGQTKPVTVIKMVAEGTVDEDIYNMGERKKELNKSVLNDAASKD 579
V KEI+GYSD+D+H +C+ L L E+T+ SAK +L +LLP++ GHR+LLFSQWTR+LDL EV LQ +G+ F RLDGST V R+ALI++F DT IPVFLLSTRAGGLGINLT AD V+LHD+D+NP ND+QAEDRCHRIGQT+PVTVIK+VA+ TVD+ IY++G K + VL + D
Sbjct: 63 VRKEIEGYSDYDLHHLCAQHPELGKYELGEDTIMNSAKFRKLEELLPQMQKDGHRVLLFSQWTRILDLLEVFLQSRLGMGFLRLDGSTDVKSRQALIEKFN-DTDIPVFLLSTRAGGLGINLTAADAVVLHDLDWNPTNDQQAEDRCHRIGQTRPVTVIKLVAQDTVDQAIYDIGHCKAAVTAKVLGEEEDDD 254
BLAST of mRNA_H-elongata_contig84277.16041.1 vs. uniprot
Match: A0A2D4BWW0_PYTIN (Helicase C-terminal domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BWW0_PYTIN) HSP 1 Score: 236 bits (603), Expect = 2.670e-72 Identity = 121/189 (64.02%), Postives = 147/189 (77.78%), Query Frame = 1
Query: 1 VMKEIKGYSDFDIHQICSTF---DSLRHLCLPEETLFTSAKMSRLRDLLPKLISQGHRILLFSQWTRLLDLFEVLLQDSMGLKFCRLDGSTPVSERKALIDRFGADTSIPVFLLSTRAGGLGINLTCADTVILHDVDFNPENDRQAEDRCHRIGQTKPVTVIKMVAEGTVDEDIYNMGERKKELNKSVL 558
V KEI+GYSDF++H +C + D L+ L LP E L SAK LRDLLPKL ++GHR+L+FSQWT+LLDL EVL+ M ++ RLDGST V+ER+ LID + DT+I VFLLSTRAGGLGINLT ADTVILHD+DFNP ND QA DRCHRIGQTKPV++ K+V+E TVD DIY +GE K +LN +VL
Sbjct: 278 VRKEIEGYSDFELHDLCVQYGGIDELKQLQLPIEALLESAKFDLLRDLLPKLKTEGHRVLIFSQWTKLLDLLEVLMSH-MDYRYLRLDGSTEVAERQGLIDTYNQDTNIFVFLLSTRAGGLGINLTAADTVILHDLDFNPTNDEQACDRCHRIGQTKPVSIYKLVSEDTVDHDIYRLGESKTQLNNAVL 465
BLAST of mRNA_H-elongata_contig84277.16041.1 vs. uniprot
Match: A0A2D4CG48_PYTIN (ATP-dependent helicase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CG48_PYTIN) HSP 1 Score: 236 bits (603), Expect = 3.460e-69 Identity = 121/189 (64.02%), Postives = 147/189 (77.78%), Query Frame = 1
Query: 1 VMKEIKGYSDFDIHQICSTF---DSLRHLCLPEETLFTSAKMSRLRDLLPKLISQGHRILLFSQWTRLLDLFEVLLQDSMGLKFCRLDGSTPVSERKALIDRFGADTSIPVFLLSTRAGGLGINLTCADTVILHDVDFNPENDRQAEDRCHRIGQTKPVTVIKMVAEGTVDEDIYNMGERKKELNKSVL 558
V KEI+GYSDF++H +C + D L+ L LP E L SAK LRDLLPKL ++GHR+L+FSQWT+LLDL EVL+ M ++ RLDGST V+ER+ LID + DT+I VFLLSTRAGGLGINLT ADTVILHD+DFNP ND QA DRCHRIGQTKPV++ K+V+E TVD DIY +GE K +LN +VL
Sbjct: 689 VRKEIEGYSDFELHDLCVQYGGIDELKQLQLPIEALLESAKFDLLRDLLPKLKTEGHRVLIFSQWTKLLDLLEVLMSH-MDYRYLRLDGSTEVAERQGLIDTYNQDTNIFVFLLSTRAGGLGINLTAADTVILHDLDFNPTNDEQACDRCHRIGQTKPVSIYKLVSEDTVDHDIYRLGESKTQLNNAVL 876
BLAST of mRNA_H-elongata_contig84277.16041.1 vs. uniprot
Match: A0A8K1FHG0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHG0_PYTOL) HSP 1 Score: 235 bits (600), Expect = 2.490e-68 Identity = 120/189 (63.49%), Postives = 149/189 (78.84%), Query Frame = 1
Query: 1 VMKEIKGYSDFDIHQICSTF---DSLRHLCLPEETLFTSAKMSRLRDLLPKLISQGHRILLFSQWTRLLDLFEVLLQDSMGLKFCRLDGSTPVSERKALIDRFGADTSIPVFLLSTRAGGLGINLTCADTVILHDVDFNPENDRQAEDRCHRIGQTKPVTVIKMVAEGTVDEDIYNMGERKKELNKSVL 558
V KE++GYSDF++H +C + + LR L LP ETL SAK LR LLPKL S+GHR+L+FSQWT+LLDL EVL++D M ++ RLDGST VS+R+ LID + DT++ VFLLSTRAGGLGINLT ADTVILHD+DFNP ND QA DRCHRIGQTKPV++ K+V+E TVD +IY +GE K +LN +VL
Sbjct: 805 VRKELEGYSDFELHDLCVQYGGNEELRKLQLPMETLLHSAKFDFLRTLLPKLRSEGHRVLIFSQWTKLLDLLEVLMRD-MDYRYLRLDGSTDVSDRQQLIDEYNQDTNLFVFLLSTRAGGLGINLTAADTVILHDLDFNPTNDEQACDRCHRIGQTKPVSIYKLVSEDTVDHNIYKLGEAKTQLNNAVL 992
BLAST of mRNA_H-elongata_contig84277.16041.1 vs. uniprot
Match: A0A7S2A6Z7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6Z7_TRICV) HSP 1 Score: 214 bits (546), Expect = 1.960e-67 Identity = 107/156 (68.59%), Postives = 127/156 (81.41%), Query Frame = 1
Query: 106 SAKMSRLRDLLPKLISQGHRILLFSQWTRLLDLFEVLLQDSMGLKFCRLDGSTPVSERKALIDRFGADTSIPVFLLSTRAGGLGINLTCADTVILHDVDFNPENDRQAEDRCHRIGQTKPVTVIKMVAEGTVDEDIYNMGERKKELNKSVLNDAAS 573
S K RLRDLLP+L S+GHR+L+FSQWTR LDL L+ DS+G +F RLDG TP++ER+ LID F DTSIPVFLLSTRAGG+GINLT ADT ILHD+DFNP ND QAEDRCHRIGQ +PVT+IKMV EGTVD DIY M ERK ++N ++L + +S
Sbjct: 1 SPKFVRLRDLLPRLSSEGHRMLVFSQWTRCLDLLGCLM-DSIGFRFLRLDGQTPIAERQGLIDEFNTDTSIPVFLLSTRAGGMGINLTAADTCILHDLDFNPFNDIQAEDRCHRIGQKRPVTIIKMVTEGTVDADIYKMQERKAKMNAAILENGSS 155
BLAST of mRNA_H-elongata_contig84277.16041.1 vs. uniprot
Match: A0A2P4YB21_9STRA (ATP-dependent helicase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YB21_9STRA) HSP 1 Score: 223 bits (568), Expect = 2.670e-67 Identity = 114/189 (60.32%), Postives = 142/189 (75.13%), Query Frame = 1
Query: 1 VMKEIKGYSDFDIHQICSTFDS---LRHLCLPEETLFTSAKMSRLRDLLPKLISQGHRILLFSQWTRLLDLFEVLLQDSMGLKFCRLDGSTPVSERKALIDRFGADTSIPVFLLSTRAGGLGINLTCADTVILHDVDFNPENDRQAEDRCHRIGQTKPVTVIKMVAEGTVDEDIYNMGERKKELNKSVL 558
V +E++ YSDF++H +C +++ LR L LP E+L SAK LR LLPKL +GHR+L+FSQWT+LLDL EVL+ M ++ RLDGST V ER+ LID + D +I VFLLSTRAGGLGINLT ADTVILHD+DFNP D QA DRCHRIGQTKPV++ K+V+E TVD DIY +GE K +LN +L
Sbjct: 248 VRQELESYSDFELHDLCVQYEAIEELRQLQLPMESLLASAKFDYLRKLLPKLQKEGHRVLIFSQWTKLLDLLEVLMSH-MEYRYLRLDGSTDVQERQGLIDTYNEDKNIFVFLLSTRAGGLGINLTAADTVILHDLDFNPTADEQACDRCHRIGQTKPVSIYKLVSENTVDHDIYKLGESKTDLNHKIL 435 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84277.16041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig84277.16041.1 >prot_H-elongata_contig84277.16041.1 ID=prot_H-elongata_contig84277.16041.1|Name=mRNA_H-elongata_contig84277.16041.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=216bp MKEIKGYSDFDIHQICSTFDSLRHLCLPEETLFTSAKMSRLRDLLPKLISback to top mRNA from alignment at H-elongata_contig84277:28..2599- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig84277.16041.1 ID=mRNA_H-elongata_contig84277.16041.1|Name=mRNA_H-elongata_contig84277.16041.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2572bp|location=Sequence derived from alignment at H-elongata_contig84277:28..2599- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig84277:28..2599- >mRNA_H-elongata_contig84277.16041.1 ID=mRNA_H-elongata_contig84277.16041.1|Name=mRNA_H-elongata_contig84277.16041.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1296bp|location=Sequence derived from alignment at H-elongata_contig84277:28..2599- (Himanthalia elongata Himel1 dioecious)back to top |