mRNA_H-elongata_contig84277.16041.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84277.16041.1
Unique NamemRNA_H-elongata_contig84277.16041.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig84277.16041.1 vs. uniprot
Match: D8LSU0_ECTSI (Similar to helicase, lymphoid-specific isoform 9 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU0_ECTSI)

HSP 1 Score: 358 bits (920), Expect = 4.980e-115
Identity = 180/215 (83.72%), Postives = 197/215 (91.63%), Query Frame = 1
Query:    1 VMKEIKGYSDFDIHQICSTFDSLRHLCLPEETLFTSAKMSRLRDLLPKLISQGHRILLFSQWTRLLDLFEVLLQDSMGLKFCRLDGSTPVSERKALIDRFGADTSIPVFLLSTRAGGLGINLTCADTVILHDVDFNPENDRQAEDRCHRIGQTKPVTVIKMVAEGTVDEDIYNMGERKKELNKSVLNDAASK-DKDTASTISGILKRAIQIHIAS 642
            V KE+ GYSDFD+HQ+CS FDSL+HLCL EETLFTSAKM RLR LLP+L+S+GHRILLFSQWTRLLDL EVLL +SMG+ FCRLDGSTPVSERKALID+FGADTSIPVFLLSTRAGGLGINLT ADTVILHDVDFNPENDRQAEDRCHRIGQTKPVTVI+MVA GTVDEDIY MGERKKE+N+ VLND+  K +KD ASTISGILKRAIQ+H+ S
Sbjct:  728 VAKEVSGYSDFDLHQVCSGFDSLKHLCLSEETLFTSAKMERLRALLPQLVSEGHRILLFSQWTRLLDLLEVLLGESMGMTFCRLDGSTPVSERKALIDKFGADTSIPVFLLSTRAGGLGINLTAADTVILHDVDFNPENDRQAEDRCHRIGQTKPVTVIRMVAAGTVDEDIYLMGERKKEVNQRVLNDSGKKGEKDAASTISGILKRAIQVHVGS 942          
BLAST of mRNA_H-elongata_contig84277.16041.1 vs. uniprot
Match: A0A6H5KRD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRD4_9PHAE)

HSP 1 Score: 354 bits (909), Expect = 1.970e-111
Identity = 180/219 (82.19%), Postives = 197/219 (89.95%), Query Frame = 1
Query:    1 VMKEIKGYSDFDIHQICSTFDSLRHLCLPEETLFTSAKMSRLRDLLPKLISQGHRILLFSQWTRLLDLFE----VLLQDSMGLKFCRLDGSTPVSERKALIDRFGADTSIPVFLLSTRAGGLGINLTCADTVILHDVDFNPENDRQAEDRCHRIGQTKPVTVIKMVAEGTVDEDIYNMGERKKELNKSVLNDAASK-DKDTASTISGILKRAIQIHIAS 642
            V KE+ GYSDFD+HQ+CS FDSL+HLCL EETLFTSAKM RLR LLP+L+S+GHR+LLFSQWTRLLDL E    VLL DSMG+ FCRLDGSTPVSERKALID+FGADTSIPVFLLSTRAGGLGINLT ADTVILHDVDFNPENDRQAEDRCHRIGQTKPVTVI+MVA GTVDEDIY MGERKKE+N+ VLND+  K +KD ASTISGILKRAIQ+H+ S
Sbjct:  992 VAKEVSGYSDFDLHQVCSGFDSLKHLCLSEETLFTSAKMERLRTLLPQLVSEGHRVLLFSQWTRLLDLLEASAHVLLGDSMGMTFCRLDGSTPVSERKALIDKFGADTSIPVFLLSTRAGGLGINLTAADTVILHDVDFNPENDRQAEDRCHRIGQTKPVTVIRMVAAGTVDEDIYLMGERKKEVNQRVLNDSGKKGEKDAASTISGILKRAIQVHVGS 1210          
BLAST of mRNA_H-elongata_contig84277.16041.1 vs. uniprot
Match: A0A7S3H645_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H645_9STRA)

HSP 1 Score: 256 bits (654), Expect = 2.380e-81
Identity = 129/188 (68.62%), Postives = 153/188 (81.38%), Query Frame = 1
Query:    1 VMKEIKGYSDFDIHQICSTFDSLRHLCLPEETLFTSAKMSRLRDLLPKLISQGHRILLFSQWTRLLDLFEVLLQDSMGLKFCRLDGSTPVSERKALIDRFGADTSIPVFLLSTRAGGLGINLTCADTVILHDVDFNPENDRQAEDRCHRIGQTKPVTVIKMVAEGTVDEDIYNMGERKKELNKSVLND 564
            V  EI  +SDFDIHQ+C  +D+L  L L E+ L+ S KM  L+D LPKL S GHR+L+FSQWTRLLDL EVLLQD + L + RLDGSTPV +R+ LID F  DTSIPVFLLST+AGGLGINLT ADTV+LHD+DFNPEND+QAEDRCHRIGQTKPVTV K+ A+ +VDEDI+ MGERK +L+K+VL D
Sbjct:  127 VQDEINTFSDFDIHQLCLEYDALNSLQLTEDVLYDSPKMHWLKDNLPKLKSDGHRVLVFSQWTRLLDLLEVLLQD-INLTYLRLDGSTPVKQRQDLIDTFNTDTSIPVFLLSTKAGGLGINLTAADTVVLHDLDFNPENDKQAEDRCHRIGQTKPVTVYKLFAKDSVDEDIFEMGERKSKLSKAVLQD 313          
BLAST of mRNA_H-elongata_contig84277.16041.1 vs. uniprot
Match: A0A835Z3Y7_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Y7_9STRA)

HSP 1 Score: 253 bits (646), Expect = 4.820e-74
Identity = 133/214 (62.15%), Postives = 166/214 (77.57%), Query Frame = 1
Query:    1 VMKEIKGYSDFDIHQICSTFDSLRHLCLPEETLFTSAKMSRLRDLLPKLISQGHRILLFSQWTRLLDLFEVLLQDSMGLKFCRLDGSTPVSERKALIDRFGADTSIPVFLLSTRAGGLGINLTCADTVILHDVDFNPENDRQAEDRCHRIGQTKPVTVIKMVAEGTVDEDIYNMGERKKELNKSVLNDAASKDKDT-----ASTISGILKRAIQ 627
            V KE++ +SD+D+HQ+CS F +L  L L ++ LF+SAKM RLR LLP+L +QGHR+LLFSQWTR+LDL EV L + +G+++ RLDGSTPV +R+ALI  F AD  I VFLLSTRAGGLGINLT ADTVILHD+DFNPEND+QAEDR   IGQTKPV VIK+VA+GTVDEDIY +G RK  ++ +VL++ A   K         TI+GIL RAI+
Sbjct:  950 VRKELETFSDYDMHQLCSHFPALEDLTLQQDALFSSAKMVRLRGLLPELQAQGHRVLLFSQWTRILDLMEVFLSEVLGMRYTRLDGSTPVQQRQALIQGFAADPGIAVFLLSTRAGGLGINLTSADTVILHDLDFNPENDKQAEDR---IGQTKPVRVIKLVAQGTVDEDIYRLGARKASVSAAVLDEVAPGKKGAQGDADGGTIAGILNRAIR 1160          
BLAST of mRNA_H-elongata_contig84277.16041.1 vs. uniprot
Match: A0A7S3US29_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3US29_HETAK)

HSP 1 Score: 231 bits (588), Expect = 1.720e-72
Identity = 115/193 (59.59%), Postives = 145/193 (75.13%), Query Frame = 1
Query:    1 VMKEIKGYSDFDIHQICSTFDSLRHLCLPEETLFTSAKMSRLRDLLPKLISQGHRILLFSQWTRLLDLFEVLLQDSMGLKFCRLDGSTPVSERKALIDRFGADTSIPVFLLSTRAGGLGINLTCADTVILHDVDFNPENDRQAEDRCHRIGQTKPVTVIKMVAEGTVDEDIYNMGERKKELNKSVLNDAASKD 579
            V KEI+GYSD+D+H +C+    L    L E+T+  SAK  +L +LLP++   GHR+LLFSQWTR+LDL EV LQ  +G+ F RLDGST V  R+ALI++F  DT IPVFLLSTRAGGLGINLT AD V+LHD+D+NP ND+QAEDRCHRIGQT+PVTVIK+VA+ TVD+ IY++G  K  +   VL +    D
Sbjct:   63 VRKEIEGYSDYDLHHLCAQHPELGKYELGEDTIMNSAKFRKLEELLPQMQKDGHRVLLFSQWTRILDLLEVFLQSRLGMGFLRLDGSTDVKSRQALIEKFN-DTDIPVFLLSTRAGGLGINLTAADAVVLHDLDWNPTNDQQAEDRCHRIGQTRPVTVIKLVAQDTVDQAIYDIGHCKAAVTAKVLGEEEDDD 254          
BLAST of mRNA_H-elongata_contig84277.16041.1 vs. uniprot
Match: A0A2D4BWW0_PYTIN (Helicase C-terminal domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BWW0_PYTIN)

HSP 1 Score: 236 bits (603), Expect = 2.670e-72
Identity = 121/189 (64.02%), Postives = 147/189 (77.78%), Query Frame = 1
Query:    1 VMKEIKGYSDFDIHQICSTF---DSLRHLCLPEETLFTSAKMSRLRDLLPKLISQGHRILLFSQWTRLLDLFEVLLQDSMGLKFCRLDGSTPVSERKALIDRFGADTSIPVFLLSTRAGGLGINLTCADTVILHDVDFNPENDRQAEDRCHRIGQTKPVTVIKMVAEGTVDEDIYNMGERKKELNKSVL 558
            V KEI+GYSDF++H +C  +   D L+ L LP E L  SAK   LRDLLPKL ++GHR+L+FSQWT+LLDL EVL+   M  ++ RLDGST V+ER+ LID +  DT+I VFLLSTRAGGLGINLT ADTVILHD+DFNP ND QA DRCHRIGQTKPV++ K+V+E TVD DIY +GE K +LN +VL
Sbjct:  278 VRKEIEGYSDFELHDLCVQYGGIDELKQLQLPIEALLESAKFDLLRDLLPKLKTEGHRVLIFSQWTKLLDLLEVLMSH-MDYRYLRLDGSTEVAERQGLIDTYNQDTNIFVFLLSTRAGGLGINLTAADTVILHDLDFNPTNDEQACDRCHRIGQTKPVSIYKLVSEDTVDHDIYRLGESKTQLNNAVL 465          
BLAST of mRNA_H-elongata_contig84277.16041.1 vs. uniprot
Match: A0A2D4CG48_PYTIN (ATP-dependent helicase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CG48_PYTIN)

HSP 1 Score: 236 bits (603), Expect = 3.460e-69
Identity = 121/189 (64.02%), Postives = 147/189 (77.78%), Query Frame = 1
Query:    1 VMKEIKGYSDFDIHQICSTF---DSLRHLCLPEETLFTSAKMSRLRDLLPKLISQGHRILLFSQWTRLLDLFEVLLQDSMGLKFCRLDGSTPVSERKALIDRFGADTSIPVFLLSTRAGGLGINLTCADTVILHDVDFNPENDRQAEDRCHRIGQTKPVTVIKMVAEGTVDEDIYNMGERKKELNKSVL 558
            V KEI+GYSDF++H +C  +   D L+ L LP E L  SAK   LRDLLPKL ++GHR+L+FSQWT+LLDL EVL+   M  ++ RLDGST V+ER+ LID +  DT+I VFLLSTRAGGLGINLT ADTVILHD+DFNP ND QA DRCHRIGQTKPV++ K+V+E TVD DIY +GE K +LN +VL
Sbjct:  689 VRKEIEGYSDFELHDLCVQYGGIDELKQLQLPIEALLESAKFDLLRDLLPKLKTEGHRVLIFSQWTKLLDLLEVLMSH-MDYRYLRLDGSTEVAERQGLIDTYNQDTNIFVFLLSTRAGGLGINLTAADTVILHDLDFNPTNDEQACDRCHRIGQTKPVSIYKLVSEDTVDHDIYRLGESKTQLNNAVL 876          
BLAST of mRNA_H-elongata_contig84277.16041.1 vs. uniprot
Match: A0A8K1FHG0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHG0_PYTOL)

HSP 1 Score: 235 bits (600), Expect = 2.490e-68
Identity = 120/189 (63.49%), Postives = 149/189 (78.84%), Query Frame = 1
Query:    1 VMKEIKGYSDFDIHQICSTF---DSLRHLCLPEETLFTSAKMSRLRDLLPKLISQGHRILLFSQWTRLLDLFEVLLQDSMGLKFCRLDGSTPVSERKALIDRFGADTSIPVFLLSTRAGGLGINLTCADTVILHDVDFNPENDRQAEDRCHRIGQTKPVTVIKMVAEGTVDEDIYNMGERKKELNKSVL 558
            V KE++GYSDF++H +C  +   + LR L LP ETL  SAK   LR LLPKL S+GHR+L+FSQWT+LLDL EVL++D M  ++ RLDGST VS+R+ LID +  DT++ VFLLSTRAGGLGINLT ADTVILHD+DFNP ND QA DRCHRIGQTKPV++ K+V+E TVD +IY +GE K +LN +VL
Sbjct:  805 VRKELEGYSDFELHDLCVQYGGNEELRKLQLPMETLLHSAKFDFLRTLLPKLRSEGHRVLIFSQWTKLLDLLEVLMRD-MDYRYLRLDGSTDVSDRQQLIDEYNQDTNLFVFLLSTRAGGLGINLTAADTVILHDLDFNPTNDEQACDRCHRIGQTKPVSIYKLVSEDTVDHNIYKLGEAKTQLNNAVL 992          
BLAST of mRNA_H-elongata_contig84277.16041.1 vs. uniprot
Match: A0A7S2A6Z7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6Z7_TRICV)

HSP 1 Score: 214 bits (546), Expect = 1.960e-67
Identity = 107/156 (68.59%), Postives = 127/156 (81.41%), Query Frame = 1
Query:  106 SAKMSRLRDLLPKLISQGHRILLFSQWTRLLDLFEVLLQDSMGLKFCRLDGSTPVSERKALIDRFGADTSIPVFLLSTRAGGLGINLTCADTVILHDVDFNPENDRQAEDRCHRIGQTKPVTVIKMVAEGTVDEDIYNMGERKKELNKSVLNDAAS 573
            S K  RLRDLLP+L S+GHR+L+FSQWTR LDL   L+ DS+G +F RLDG TP++ER+ LID F  DTSIPVFLLSTRAGG+GINLT ADT ILHD+DFNP ND QAEDRCHRIGQ +PVT+IKMV EGTVD DIY M ERK ++N ++L + +S
Sbjct:    1 SPKFVRLRDLLPRLSSEGHRMLVFSQWTRCLDLLGCLM-DSIGFRFLRLDGQTPIAERQGLIDEFNTDTSIPVFLLSTRAGGMGINLTAADTCILHDLDFNPFNDIQAEDRCHRIGQKRPVTIIKMVTEGTVDADIYKMQERKAKMNAAILENGSS 155          
BLAST of mRNA_H-elongata_contig84277.16041.1 vs. uniprot
Match: A0A2P4YB21_9STRA (ATP-dependent helicase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YB21_9STRA)

HSP 1 Score: 223 bits (568), Expect = 2.670e-67
Identity = 114/189 (60.32%), Postives = 142/189 (75.13%), Query Frame = 1
Query:    1 VMKEIKGYSDFDIHQICSTFDS---LRHLCLPEETLFTSAKMSRLRDLLPKLISQGHRILLFSQWTRLLDLFEVLLQDSMGLKFCRLDGSTPVSERKALIDRFGADTSIPVFLLSTRAGGLGINLTCADTVILHDVDFNPENDRQAEDRCHRIGQTKPVTVIKMVAEGTVDEDIYNMGERKKELNKSVL 558
            V +E++ YSDF++H +C  +++   LR L LP E+L  SAK   LR LLPKL  +GHR+L+FSQWT+LLDL EVL+   M  ++ RLDGST V ER+ LID +  D +I VFLLSTRAGGLGINLT ADTVILHD+DFNP  D QA DRCHRIGQTKPV++ K+V+E TVD DIY +GE K +LN  +L
Sbjct:  248 VRQELESYSDFELHDLCVQYEAIEELRQLQLPMESLLASAKFDYLRKLLPKLQKEGHRVLIFSQWTKLLDLLEVLMSH-MEYRYLRLDGSTDVQERQGLIDTYNEDKNIFVFLLSTRAGGLGINLTAADTVILHDLDFNPTADEQACDRCHRIGQTKPVSIYKLVSENTVDHDIYKLGESKTDLNHKIL 435          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84277.16041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSU0_ECTSI4.980e-11583.72Similar to helicase, lymphoid-specific isoform 9 n... [more]
A0A6H5KRD4_9PHAE1.970e-11182.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3H645_9STRA2.380e-8168.62Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A835Z3Y7_9STRA4.820e-7462.15SNF2 family N-terminal domain-containing protein n... [more]
A0A7S3US29_HETAK1.720e-7259.59Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2D4BWW0_PYTIN2.670e-7264.02Helicase C-terminal domain-containing protein n=1 ... [more]
A0A2D4CG48_PYTIN3.460e-6964.02ATP-dependent helicase, putative n=1 Tax=Pythium i... [more]
A0A8K1FHG0_PYTOL2.490e-6863.49Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2A6Z7_TRICV1.960e-6768.59Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A2P4YB21_9STRA2.670e-6760.32ATP-dependent helicase n=1 Tax=Phytophthora palmiv... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84277contigH-elongata_contig84277:28..2599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score362.1
Seed ortholog evalue1.8e-97
Seed eggNOG ortholog2880.D8LSU0
Preferred nameSMARCAD1
KEGG koko:K14439
KEGG Pathwayko04550,map04550
GOsGO:0000018,GO:0000122,GO:0000166,GO:0000183,GO:0000228,GO:0000729,GO:0000775,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005720,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006348,GO:0006355,GO:0006357,GO:0006464,GO:0006476,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009117,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010225,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0016043,GO:0016363,GO:0016458,GO:0016462,GO:0016569,GO:0016570,GO:0016575,GO:0016584,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0019637,GO:0022402,GO:0022607,GO:0023051,GO:0023056,GO:0030466,GO:0030554,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031497,GO:0031507,GO:0031934,GO:0031974,GO:0031981,GO:0032015,GO:0032017,GO:0032392,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0034399,GO:0034401,GO:0034641,GO:0034644,GO:0034724,GO:0034728,GO:0035601,GO:0035639,GO:0035861,GO:0036094,GO:0036211,GO:0040029,GO:0042623,GO:0042766,GO:0043044,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043596,GO:0043933,GO:0043954,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046483,GO:0046578,GO:0046579,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051056,GO:0051057,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051259,GO:0051260,GO:0051276,GO:0051304,GO:0051716,GO:0055086,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070035,GO:0070827,GO:0070828,GO:0070829,GO:0070868,GO:0070869,GO:0070870,GO:0070932,GO:0070933,GO:0071103,GO:0071214,GO:0071478,GO:0071482,GO:0071494,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090734,GO:0097159,GO:0097367,GO:0097549,GO:0098687,GO:0098732,GO:0104004,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902531,GO:1902533,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.helicase activity
EggNOG OGsKOG0389@1,KOG0389@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons4
Model size651
Cds size648
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84277.16041.1prot_H-elongata_contig84277.16041.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84277 28..2596 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931247.75082-CDS-H-elongata_contig84277:27..741622931247.75082-CDS-H-elongata_contig84277:27..74Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84277 28..74 -
1691679758.6295457-CDS-H-elongata_contig84277:27..741691679758.6295457-CDS-H-elongata_contig84277:27..74Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84277 28..74 -
1622931247.7745714-CDS-H-elongata_contig84277:938..11101622931247.7745714-CDS-H-elongata_contig84277:938..1110Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84277 939..1110 -
1691679758.6392307-CDS-H-elongata_contig84277:938..11101691679758.6392307-CDS-H-elongata_contig84277:938..1110Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84277 939..1110 -
1622931247.7903228-CDS-H-elongata_contig84277:1820..20421622931247.7903228-CDS-H-elongata_contig84277:1820..2042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84277 1821..2042 -
1691679758.646783-CDS-H-elongata_contig84277:1820..20421691679758.646783-CDS-H-elongata_contig84277:1820..2042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84277 1821..2042 -
1622931247.811911-CDS-H-elongata_contig84277:2389..25961622931247.811911-CDS-H-elongata_contig84277:2389..2596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84277 2390..2596 -
1691679758.6549058-CDS-H-elongata_contig84277:2389..25961691679758.6549058-CDS-H-elongata_contig84277:2389..2596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84277 2390..2596 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931247.8352585-UTR-H-elongata_contig84277:2596..25991622931247.8352585-UTR-H-elongata_contig84277:2596..2599Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84277 2597..2599 -
1691679758.6632068-UTR-H-elongata_contig84277:2596..25991691679758.6632068-UTR-H-elongata_contig84277:2596..2599Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84277 2597..2599 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84277.16041.1

>prot_H-elongata_contig84277.16041.1 ID=prot_H-elongata_contig84277.16041.1|Name=mRNA_H-elongata_contig84277.16041.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=216bp
MKEIKGYSDFDIHQICSTFDSLRHLCLPEETLFTSAKMSRLRDLLPKLIS
QGHRILLFSQWTRLLDLFEVLLQDSMGLKFCRLDGSTPVSERKALIDRFG
ADTSIPVFLLSTRAGGLGINLTCADTVILHDVDFNPENDRQAEDRCHRIG
QTKPVTVIKMVAEGTVDEDIYNMGERKKELNKSVLNDAASKDKDTASTIS
GILKRAIQIHIASSA*
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mRNA from alignment at H-elongata_contig84277:28..2599-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84277.16041.1 ID=mRNA_H-elongata_contig84277.16041.1|Name=mRNA_H-elongata_contig84277.16041.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2572bp|location=Sequence derived from alignment at H-elongata_contig84277:28..2599- (Himanthalia elongata Himel1 dioecious)
GTGATGAAGGAGATCAAGGGGTACTCGGACTTCGACATACACCAGATCTG CTCGACCTTCGACAGCTTGCGACACCTCTGCCTCCCGGAAGAAACTCTGT TTACATCGGCCAAGATGTCGAGACTGAGGGATCTACTGCCCAAGCTCATT TCGCAGGGACATCGCATCCTCCTGTTCTCTCAGTGGACGCGTCTCTTGGA TCTCTTCGAGGTTAGGCGCGCGCGCGTCTCCACAAAAGTTGTGGGAGTTT GTTTGTGGGTTTTTTTCATCAAGGAAAAAAAATCGTCGTTAAAAAGTGTG ACGTGAAATACACACACGTGGTTCTGTAGTAGCGGTGCGGTTCGGTTGGT ATACATAAAGTCTATACTTAATTTTTATATGTAGTATTGCACAAAATCTG CATGACAAAATTGGAATGTTGTTGTAACATGCAGAATTGGTGCCATAGGC TCTATACGAACTATGTATACATACGGCGTTAGTTAGTAAATCAGGCCTGG TACATCGAGTGATACTTTTTTGAACACCCTCTGCTATTTTTGTGCTTTTT TTGCCAGGTTTTGCTGCAAGATTCGATGGGGCTCAAATTTTGCCGCCTGG ATGGCTCCACGCCCGTATCGGAGCGCAAGGCTTTGATCGACCGCTTTGGC GCGGACACCAGTATCCCCGTCTTTTTGCTGAGCACGCGGGCCGGCGGCCT GGGGATCAACCTTACGTGTGCGGATACGGTGATCCTCCACGACGTGGACT TCAATCCGGAAAACGATCGACAGGCTGAGGTGGATATGATTGATGTCGTA CACCACATGTGAATCAATGTCGTGTGATGTAATCTTGATGTTAGGACAAG TCACGCGTAGGGCGAAAATATCGTGATACGGGTTAGGAAATATGTCAAGA TGATGTGACACGTCTGTCACGCCCAGGGCAAAAATATGTAGATATACAAA GTGGAAATAATATGTAAATATGAAGGGGGGTTTTGGTTTTTGGTATTGCA TCACAGTAAGAGATAAAATAACAAACCTCAAGCGACTTTGTGTGCCTTGT GCGTTCTTCACTCATATTTAACCATTGCCAATCGGATTTGCGTTCTGCTG GGGTTTTTTCACGATGACATAGAAAGTGATTTGGCATGATGACGCAATAT GACGTCATGGCATGCCCGCTAGATCGTTGTGTTCAACCAGGGTTAAGATC GATCGATCGATATATTATACCGTTTGGTTGGTTATCCAGCCCCTATTGGG TGCCTTCTTGTTTTGAAGATTTAATTGGCCAGGCCACCTCCCCTATCTGA TAGACGCGTACGAGTACCGTTTGGACGCGCGCGCGCGAGAGAGAGAGAAA TCGCATGACGTCATAGATCAGCGTCGAAGACGGGTAGATCGCTAATCCTG CCATCCAAAACCAACGCCTGGAGCATGTTTGTCTCAAGAGTCCCAACACC ACCCACCCAATCTCTTTTCACTGCCACTGCCGCTGATAGGATCGATGCCA CCGCATCGGGCAAACAAAACCAGTCACGGTGATCAAGATGGTGGCGGAGG GCACCGTGGACGAGGACATTTACAACATGGGGGAAAGAAAGAAGGAGCTG AACAAGTCGGTGCTCAACGACGCGGCGTCGAAGGACAAGGATACCGCCTC GACGATCTCGGGTAGGCTTTTTTGTTTTTGTCTTAGCCCCGCGGGGGGGG GGGGGGGGGGGGTCAATGGGGGACCCTCGGGGCCCCCTGGGAGATAAAGG GGGTGTTTTGTGGAGGTAAACCCGGGGCCAACCCNNNNNNNNNNGGGGGG GCGGAGGAGGGACAGGCCGACCCCCCGGCGGTGGGGGGTGTGTTTTTTTT TTTCTGCGCGGGGCGGGGGGGGGGGGGGGGGGGGGTTACATGCGCGAATC TCGAGGCCCTCTGGCAGATATAGAGGGTGTTGTGTGTACGTAAAGCCGGG CGCAACGCTCAAGTTGGTAGAGGGAAGCCCTCTGCGTCAGCGAGCAGCTG GGGAGATCGACCTCGGTGGTGGCAGTGATCGCCGGGGAAAGGGGCGGGAG ATGTGGAGGGGGGTCATCAATACACGGTTCACTCTTTTTCGTTTAACCCT TTTAGAACTAGATTTCAATTTTTATATTGAATTTAGTATCTAAGAAAAAG ATCGAGTTCCATAGAGGTTAATGGCTTATGTAGTAAAATCTATTTTACGT ACGCGGGCGGGGTGTGTTAAGCGAGCAGATAGGAGAAAAGTCTTCCAGCA CAAGGGAAGAAAAGAACGTGGCTAGAGGGCAGCAACATTTACCGCGGGTT TGTTTGGCCCTCTGCACCCCGTTCTTTTGCGTGCTCTTTTTCGCTCATCA CGTTGATGTCCGCCTCCGCACGCAAGTAACAGATCCATCGATCGATCTAT CATCGTGTTTTTTTGGAGGGCTTCTTTCCACTGTGGAATGATATCAATGA TTACTATGGTAAGAAAACCAACGCCCCCCTCTTGCGGCCCCTTTGCTTTT CTACCTTGCCCTTGTCCTTTGTCAGGCATCTTGAAGCGAGCGATCCAGAT TCACATTGCGTCATCGGCCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig84277:28..2599-

>mRNA_H-elongata_contig84277.16041.1 ID=mRNA_H-elongata_contig84277.16041.1|Name=mRNA_H-elongata_contig84277.16041.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1296bp|location=Sequence derived from alignment at H-elongata_contig84277:28..2599- (Himanthalia elongata Himel1 dioecious)
ATGAAGGAGATCAAGGGGTACTCGGACTTCGACATACACCAGATCTGCTC
GACCTTCGACAGCTTGCGACACCTCTGCCTCCCGGAAGAAACTCTGTTTA
CATCGGCCAAGATGTCGAGACTGAGGGATCTACTGCCCAAGCTCATTTCG
CAGGGACATCGCATCCTCCTGTTCTCTCAGTGGACGCGTCTCTTGGATCT
CTTCGAGATGAAGGAGATCAAGGGGTACTCGGACTTCGACATACACCAGA
TCTGCTCGACCTTCGACAGCTTGCGACACCTCTGCCTCCCGGAAGAAACT
CTGTTTACATCGGCCAAGATGTCGAGACTGAGGGATCTACTGCCCAAGCT
CATTTCGCAGGGACATCGCATCCTCCTGTTCTCTCAGTGGACGCGTCTCT
TGGATCTCTTCGAGGTTTTGCTGCAAGATTCGATGGGGCTCAAATTTTGC
CGCCTGGATGGCTCCACGCCCGTATCGGAGCGCAAGGCTTTGATCGACCG
CTTTGGCGCGGACACCAGTATCCCCGTCTTTTTGCTGAGCACGCGGGCCG
GCGGCCTGGGGATCAACCTTACGTGTGCGGATACGGTGATCCTCCACGAC
GTGGACTTCAATCCGGAAAACGATCGACAGGCTGAGGTTTTGCTGCAAGA
TTCGATGGGGCTCAAATTTTGCCGCCTGGATGGCTCCACGCCCGTATCGG
AGCGCAAGGCTTTGATCGACCGCTTTGGCGCGGACACCAGTATCCCCGTC
TTTTTGCTGAGCACGCGGGCCGGCGGCCTGGGGATCAACCTTACGTGTGC
GGATACGGTGATCCTCCACGACGTGGACTTCAATCCGGAAAACGATCGAC
AGGCTGAGGATCGATGCCACCGCATCGGGCAAACAAAACCAGTCACGGTG
ATCAAGATGGTGGCGGAGGGCACCGTGGACGAGGACATTTACAACATGGG
GGAAAGAAAGAAGGAGCTGAACAAGTCGGTGCTCAACGACGCGGCGTCGA
AGGACAAGGATACCGCCTCGACGATCTCGGGATCGATGCCACCGCATCGG
GCAAACAAAACCAGTCACGGTGATCAAGATGGTGGCGGAGGGCACCGTGG
ACGAGGACATTTACAACATGGGGGAAAGAAAGAAGGAGCTGAACAAGTCG
GTGCTCAACGACGCGGCGTCGAAGGACAAGGATACCGCCTCGACGATCTC
GGGCATCTTGAAGCGAGCGATCCAGATTCACATTGCGTCATCGGCCTGAG
CATCTTGAAGCGAGCGATCCAGATTCACATTGCGTCATCGGCCTGA
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