mRNA_H-elongata_contig84198.16037.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84198.16037.1
Unique NamemRNA_H-elongata_contig84198.16037.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig84198.16037.1 vs. uniprot
Match: A0A6H5KI22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI22_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 1.180e-35
Identity = 68/103 (66.02%), Postives = 78/103 (75.73%), Query Frame = 1 
Query:    1 IRQAYWSGTAYMGETTGAFFSSAVESSLEYLSENPRYQPFSVYEDYPGFEYLAASSCDEFAWTLLAKAQELGVHLTPALLPKKHKIIIYTEMRPEKIKLDGSG 309
            + QAYW+  +YMGETTGAFFS AVE SLEY   +PRYQPFSVYEDYPG E+L AS CDEF W LL+ AQ  GV L PALLP+KHKI+IY+  +PE I   G G
Sbjct:  122 VEQAYWNAGSYMGETTGAFFSYAVEFSLEYHRLHPRYQPFSVYEDYPGREFLTASGCDEFVWALLSAAQTRGVRLIPALLPQKHKIVIYSHSKPEIIVFSGDG 224
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BLAST of mRNA_H-elongata_contig84198.16037.1 vs. uniprot
Match: A0A835ZL91_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL91_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.060e-25
Identity = 52/101 (51.49%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:   13 YWSGTAYMGETTGAFFSSAVESSLEYLSENPRYQPFSVYEDYPGFEYLAASSCDEFAWTLLAKAQELGVHLTPALLPKKHKIIIYTEMRPEKIKLDGSGVG 315
            YWS  +Y+  TTG+ FS+AV+ + +Y  ENP YQPFSVY+ YPG + +AASSCDEF W L+  A   GV +TP++LPKK KII+Y + +P  I +D    G
Sbjct:  153 YWSSASYLASTTGSMFSAAVQLAAKYHQENPHYQPFSVYQKYPGRQLVAASSCDEFVWVLVEAANSKGVQVTPSILPKKIKIIVYADNKPVLIDIDDPSDG 253
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BLAST of mRNA_H-elongata_contig84198.16037.1 vs. uniprot
Match: A0A7S2V1C8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1C8_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.580e-16
Identity = 42/102 (41.18%), Postives = 58/102 (56.86%), Query Frame = 1 
Query:    1 IRQAYWSGTAYMGETTGAFFSSAVESSLEYLSENPRYQPFSVYEDYPGFEYLAASSCDEFAWTLLAKAQELGVHLTPALLPKKHKIIIYTEMRPEKIKLDGS 306
            I    W    YMG   G+ F   ++ +L+Y  ++  YQPFSVY+ YPG  Y+ A SCDEF W L  K   L + L P ++PKK KII+Y+   PE   L+ +
Sbjct:   39 IDSTVWDSITYMGTMGGSTFRYLLDYALDYGVKHTFYQPFSVYDAYPGHLYIPAISCDEFTWKLFEKLANLQITLNPVVVPKKVKIILYSPCEPEVYALNNT 140
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BLAST of mRNA_H-elongata_contig84198.16037.1 vs. uniprot
Match: D7FTM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM5_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 8.000e-12
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 IRQAYWSGTAYMGETTGAFFSSAVESSLEYLSENPRYQPFSVYEDYPG 144
            + QAYW+  +YMGETTGAFFS AVE SLE+   +PRYQPFSVYEDYPG
Sbjct:  122 VDQAYWNAGSYMGETTGAFFSYAVEFSLEHHRLHPRYQPFSVYEDYPG 169
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84198.16037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KI22_9PHAE1.180e-3566.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZL91_9STRA1.060e-2551.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V1C8_9STRA1.580e-1641.18Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D7FTM5_ECTSI8.000e-1272.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84198contigH-elongata_contig84198:400..2374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_008850.1
Hectar predicted targeting categoryother localisation
Exons3
Model size942
Cds size942
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84198.16037.1prot_H-elongata_contig84198.16037.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84198 400..2374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931247.4197464-CDS-H-elongata_contig84198:399..5411622931247.4197464-CDS-H-elongata_contig84198:399..541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84198 400..541 +
1691679758.5074978-CDS-H-elongata_contig84198:399..5411691679758.5074978-CDS-H-elongata_contig84198:399..541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84198 400..541 +
1622931247.4391963-CDS-H-elongata_contig84198:1535..21461622931247.4391963-CDS-H-elongata_contig84198:1535..2146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84198 1536..2146 +
1691679758.517575-CDS-H-elongata_contig84198:1535..21461691679758.517575-CDS-H-elongata_contig84198:1535..2146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84198 1536..2146 +
1622931247.4591143-CDS-H-elongata_contig84198:2185..23741622931247.4591143-CDS-H-elongata_contig84198:2185..2374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84198 2186..2374 +
1691679758.526003-CDS-H-elongata_contig84198:2185..23741691679758.526003-CDS-H-elongata_contig84198:2185..2374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84198 2186..2374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84198.16037.1

>prot_H-elongata_contig84198.16037.1 ID=prot_H-elongata_contig84198.16037.1|Name=mRNA_H-elongata_contig84198.16037.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=314bp
IRQAYWSGTAYMGETTGAFFSSAVESSLEYLSENPRYQPFSVYEDYPGFE
YLAASSCDEFAWTLLAKAQELGVHLTPALLPKKHKIIIYTEMRPEKIKLD
GSGVGSGRNPEKSGDGDGKGRASSEAKGGDSDSASWLSSSSFAAGSYASD
GDRGGGGGGEEEERDGDDSNGDGDAGDNSNRRKRQRGRQRSLMLLEGEGE
NRQEGATSMYSATSSPSRFDYDGGGDGEGGNDGSDDNDSSGKDAEHSATE
PEEEGEEEKEGGGEEAAEIIETLKPTPSPLQAEDSEGEREEQQPLDEWQE
VVAYYQSLQLCLQE
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mRNA from alignment at H-elongata_contig84198:400..2374+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84198.16037.1 ID=mRNA_H-elongata_contig84198.16037.1|Name=mRNA_H-elongata_contig84198.16037.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1975bp|location=Sequence derived from alignment at H-elongata_contig84198:400..2374+ (Himanthalia elongata Himel1 dioecious)
ATCCGTCAGGCCTACTGGTCTGGAACGGCGTACATGGGGGAGACCACAGG
CGCTTTCTTCAGCAGCGCGGTGGAGTCCAGCCTCGAATACCTGAGCGAGA
ATCCTCGATATCAGCCGTTCAGCGTCTACGAAGATTACCCGGGTACAACT
AGAACTGCCCAGACTCGTGTTGTTACCCCCCTCCCTCTCCCTTCCGATTT
CGTTTCGTTTCGTTTATTTGGTTTGACTAATTATAATCAGTCTAATTCTG
TAGTCTAATTATTATGTAGCTTTTTATTTAGTCCCATTGTTTAGATTCTA
TTTTTAGACTAATCATTATTATTATGACTACTTAGCCTTTTTCTTTTAGG
CTAATTATTTTGACATTTATATATAGGGGTGCGGGGGGATGTGGCGATTG
TTTGTTTTTCTTCAATTATCTTCAATTTGTTTTTCGCGGTTTGAACACAG
CCTACCGCCATTTCCTTTCGTTTTCTTTCTTTTAACTCTTTGCGGCATCC
TGCTATCGTCGAATAATTTTTGCCGTGAAAACGGCGACGATACCTCAAAA
TATCCCCCCTTCCCCCACCCCGCCCCGCCGAAAGCCAACTTTTTCTTTGA
AAAACAACAACATATGAACTCATTCCAACCCTCCGAACATCCACGCGCCC
TTGACATTAAATAGTGCTCACACTGGTCTTGTCGTTGTCCTCCAACCTGC
GGCATTGCGGCGACGGCCTATCGGCCCACGAAATTCGCTACCGAAGCCGT
TACGTTAATTCGGTTTCCGTGCGCCGTGTCGCCAAGGGGAAGGGAGAGGG
ATAAAAAACAGTAGCCCCGTTGTCTGCGCGTGCATACCCCATCCAATGTG
GTGGTACTATATCGCAAAAGGTCCTTTCAACAATCGAATTGGACAAGTTT
CGGCTTTGAATATAGAGAGACATATATGAAGTTGGTGACATGTTAATGTT
CGCGCAATATTTCCGAAGTCCGAAGCCATATTCTAGAGGCAAGATGATGC
GTGCCGACTCTTACGTTTAACTACACTGTACATATTTGTTTTATCTAACC
CTCTCATTCCCGAAGAAAACAAAAAACGATCGACGCCAACCCGCTTGCGG
CGCGTAACGTCACTATGCTCTCATGCAAACCCACAGGTTTTGAGTACTTG
GCGGCGAGCAGCTGCGATGAGTTCGCGTGGACGCTCTTGGCCAAGGCTCA
GGAGCTTGGGGTCCACCTGACCCCTGCGCTCCTTCCGAAGAAGCACAAAA
TAATAATCTACACGGAGATGAGGCCAGAAAAGATCAAGCTGGACGGTAGC
GGGGTCGGGAGTGGGAGAAACCCGGAAAAGAGCGGCGACGGCGACGGCAA
AGGGCGCGCTTCTTCGGAGGCGAAAGGTGGTGATTCTGACTCCGCATCCT
GGCTGTCTTCCTCGTCATTCGCAGCCGGGAGTTACGCCTCTGATGGGGAT
CGGGGAGGTGGAGGCGGAGGCGAAGAGGAGGAAAGAGACGGGGATGATAG
TAATGGCGATGGTGATGCGGGGGATAACAGCAACAGGCGGAAACGGCAAC
GGGGACGGCAGCGCTCCCTCATGTTGTTGGAGGGGGAAGGCGAGAACAGA
CAGGAGGGAGCCACCTCAATGTATTCGGCGACGTCCTCGCCCAGCAGGTT
CGACTACGATGGTGGTGGGGATGGCGAGGGAGGAAACGATGGTAGCGATG
ACAACGATTCTTCGGGGAAGGATGCGGAGCACTCGGCGACAGAGCCGGTG
GAGTATATGGAGAACACGACATACGCACTCGGTGAGGAAGAAGAGGGGGA
GGAGGAGAAGGAAGGAGGTGGAGAAGAGGCGGCGGAGATCATCGAGACGC
TCAAACCGACGCCTTCGCCCCTTCAGGCGGAGGACAGTGAGGGAGAGAGA
GAGGAGCAACAGCCGTTGGACGAGTGGCAAGAGGTGGTAGCGTACTACCA
GTCCCTGCAGCTGTGTCTCCAAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig84198:400..2374+

>mRNA_H-elongata_contig84198.16037.1 ID=mRNA_H-elongata_contig84198.16037.1|Name=mRNA_H-elongata_contig84198.16037.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1884bp|location=Sequence derived from alignment at H-elongata_contig84198:400..2374+ (Himanthalia elongata Himel1 dioecious)
ATCCGTCAGGCCTACTGGTCTGGAACGGCGTACATGGGGGAGACCACAGG
CGCTTTCTTCAGCAGCGCGGTGGAGTCCAGCCTCGAATACCTGAGCGAGA
ATCCTCGATATCAGCCGTTCAGCGTCTACGAAGATTACCCGGATCCGTCA
GGCCTACTGGTCTGGAACGGCGTACATGGGGGAGACCACAGGCGCTTTCT
TCAGCAGCGCGGTGGAGTCCAGCCTCGAATACCTGAGCGAGAATCCTCGA
TATCAGCCGTTCAGCGTCTACGAAGATTACCCGGGTTTTGAGTACTTGGC
GGCGAGCAGCTGCGATGAGTTCGCGTGGACGCTCTTGGCCAAGGCTCAGG
AGCTTGGGGTCCACCTGACCCCTGCGCTCCTTCCGAAGAAGCACAAAATA
ATAATCTACACGGAGATGAGGCCAGAAAAGATCAAGCTGGACGGTAGCGG
GGTCGGGAGTGGGAGAAACCCGGAAAAGAGCGGCGACGGCGACGGCAAAG
GGCGCGCTTCTTCGGAGGCGAAAGGTGGTGATTCTGACTCCGCATCCTGG
CTGTCTTCCTCGTCATTCGCAGCCGGGAGTTACGCCTCTGATGGGGATCG
GGGAGGTGGAGGCGGAGGCGAAGAGGAGGAAAGAGACGGGGATGATAGTA
ATGGCGATGGTGATGCGGGGGATAACAGCAACAGGCGGAAACGGCAACGG
GGACGGCAGCGCTCCCTCATGTTGTTGGAGGGGGAAGGCGAGAACAGACA
GGAGGGAGCCACCTCAATGTATTCGGCGACGTCCTCGCCCAGCAGGTTCG
ACTACGATGGTGGTGGGGATGGCGAGGGAGGAAACGATGGTAGCGATGAC
AACGATTCTTCGGGGAAGGATGCGGAGCACTCGGCGACAGAGCCGGTTTT
GAGTACTTGGCGGCGAGCAGCTGCGATGAGTTCGCGTGGACGCTCTTGGC
CAAGGCTCAGGAGCTTGGGGTCCACCTGACCCCTGCGCTCCTTCCGAAGA
AGCACAAAATAATAATCTACACGGAGATGAGGCCAGAAAAGATCAAGCTG
GACGGTAGCGGGGTCGGGAGTGGGAGAAACCCGGAAAAGAGCGGCGACGG
CGACGGCAAAGGGCGCGCTTCTTCGGAGGCGAAAGGTGGTGATTCTGACT
CCGCATCCTGGCTGTCTTCCTCGTCATTCGCAGCCGGGAGTTACGCCTCT
GATGGGGATCGGGGAGGTGGAGGCGGAGGCGAAGAGGAGGAAAGAGACGG
GGATGATAGTAATGGCGATGGTGATGCGGGGGATAACAGCAACAGGCGGA
AACGGCAACGGGGACGGCAGCGCTCCCTCATGTTGTTGGAGGGGGAAGGC
GAGAACAGACAGGAGGGAGCCACCTCAATGTATTCGGCGACGTCCTCGCC
CAGCAGGTTCGACTACGATGGTGGTGGGGATGGCGAGGGAGGAAACGATG
GTAGCGATGACAACGATTCTTCGGGGAAGGATGCGGAGCACTCGGCGACA
GAGCCGGAAGAAGAGGGGGAGGAGGAGAAGGAAGGAGGTGGAGAAGAGGC
GGCGGAGATCATCGAGACGCTCAAACCGACGCCTTCGCCCCTTCAGGCGG
AGGACAGTGAGGGAGAGAGAGAGGAGCAACAGCCGTTGGACGAGTGGCAA
GAGGTGGTAGCGTACTACCAGTCCCTGCAGCTGTGTCTCCAAGAGGAAGA
AGAGGGGGAGGAGGAGAAGGAAGGAGGTGGAGAAGAGGCGGCGGAGATCA
TCGAGACGCTCAAACCGACGCCTTCGCCCCTTCAGGCGGAGGACAGTGAG
GGAGAGAGAGAGGAGCAACAGCCGTTGGACGAGTGGCAAGAGGTGGTAGC
GTACTACCAGTCCCTGCAGCTGTGTCTCCAAGAG
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