mRNA_H-elongata_contig84181.16033.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig84181.16033.1
Unique Name	mRNA_H-elongata_contig84181.16033.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

[Close]

BLAST of mRNA_H-elongata_contig84181.16033.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.070e-30
Identity = 57/125 (45.60%), Postives = 83/125 (66.40%), Query Frame = 1

Query:    1 LRMVKAEAIEALLHGCSTWTLRQKDYTKLRTVHHWVLLRIIGIQRQRPDHRMISYNFTLEITQCESIVTTLCTRRLLWAATLTQMSGGRLPKRIAFGNLEG-----RGRKEKEWTDCVQSDIRAF 360
            +R+++AEA+EALL+GC TW+     Y  LR++HH +LLR+IG +R++  +R +SY  TL   +CES+  T+  RRLL+A  L +   GRLPKR+ FG L G     RG +E+ W  CV  D++AF
Sbjct:  125 IRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLRRVECESVEPTIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAF 249

[Close]

BLAST of mRNA_H-elongata_contig84181.16033.1 vs. uniprot
Match: A0A6H5KN66_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN66_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 8.500e-29
Identity = 56/124 (45.16%), Postives = 82/124 (66.13%), Query Frame = 1

Query:    4 RMVKAEAIEALLHGCSTWTLRQKDYTKLRTVHHWVLLRIIGIQRQRPDHRMISYNFTLEITQCESIVTTLCTRRLLWAATLTQMSGGRLPKRIAFGNL-----EGRGRKEKEWTDCVQSDIRAF 360
            R+++AEA+EALL+GC TW  RQ  Y  LRT+HH +LLR++G QR +  +R +SY  TL+   C+S+ +T+  RRLL+A  L +   GRLPKR+  G L      GRG+ E+ W  C++ D++ F
Sbjct:  691 RLLQAEAMEALLYGCMTWAPRQDQYRTLRTIHHRLLLRVVGYQRMKCTYRQLSYAQTLKRVGCQSVESTIRQRRLLFAGALARQPDGRLPKRLMLGELVGGEGSGRGKPEQNWQMCLKDDLKMF 814

[Close]

BLAST of mRNA_H-elongata_contig84181.16033.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.500e-28
Identity = 56/125 (44.80%), Postives = 84/125 (67.20%), Query Frame = 1

Query:    1 LRMVKAEAIEALLHGCSTWTLRQKDYTKLRTVHHWVLLRIIGIQRQRPDHRMISYNFTLEITQCESIVTTLCTRRLLWAATLTQMSGGRLPKRIAFGNLEG-----RGRKEKEWTDCVQSDIRAF 360
            +R+++AEA+EALL+GC TW+   + Y  LR++HH +LLR+IG +R++  +R +SY  TL+  +C+S+  T+  RRLL+A  L +   GRLPKR+ FG L G     RG +E+ W  CV  D+ AF
Sbjct:  477 IRLLQAEAMEALLYGCMTWSPLSRHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAF 601

[Close]

BLAST of mRNA_H-elongata_contig84181.16033.1 vs. uniprot
Match: A0A6H5KQ16_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ16_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 3.050e-28
Identity = 51/123 (41.46%), Postives = 82/123 (66.67%), Query Frame = 1

Query:    1 LRMVKAEAIEALLHGCSTWTLRQKDYTKLRTVHHWVLLRIIGIQRQRPDHRMISYNFTLEITQCESIVTTLCTRRLLWAATLTQMSGGRLPKRIAFGNLEG-----RGRKEKEWTDCVQSDIR 354
            +R+++AEA+EALL+GC TW+     Y  LR++HH +LLR++G +R++  +R + +  TL+  +C+S+  T+  RR+L+A  LT+   GRLPKR+ FG L G     RG +E+ W  CV  D++
Sbjct:  125 IRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVVGYKRKKDTYRQLGHAQTLKRVECQSVAATIRQRRILFAGALTRQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLK 247

[Close]

BLAST of mRNA_H-elongata_contig84181.16033.1 vs. uniprot
Match: A0A6H5KLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 3.060e-28
Identity = 55/133 (41.35%), Postives = 84/133 (63.16%), Query Frame = 1

Query:    4 RMVKAEAIEALLHGCSTWTLRQKDYTKLRTVHHWVLLRIIGIQRQRPDHRMISYNFTLEITQCESIVTTLCTRRLLWAATLTQMSGGRLPKRIAFGNL-----EGRGRKEKEWTDCVQSDIRAFV---ITGDW 378
            R+++AEA+EALL+GC TW+ R+  Y  L+T HH +LLR+IG +R+R  +R +SY   L+   C+S+  T+  RRLL+A  + +   GRLPKR+ FG L      G+G  E+ W  C++ D++ F    + G W
Sbjct:  156 RLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARELRGSW 288

[Close]

BLAST of mRNA_H-elongata_contig84181.16033.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 3.230e-28
Identity = 53/124 (42.74%), Postives = 81/124 (65.32%), Query Frame = 1

Query:    4 RMVKAEAIEALLHGCSTWTLRQKDYTKLRTVHHWVLLRIIGIQRQRPDHRMISYNFTLEITQCESIVTTLCTRRLLWAATLTQMSGGRLPKRIAFGNL-----EGRGRKEKEWTDCVQSDIRAF 360
            R+++AEA+EALL+GC TW+ R+  Y  L+T HH +LLR+IG +R+R  +R +SY   L+   C+S+  T+  RRLL+A  + +   GRLPKR+ FG L      G+G  E+ W  C++ D++ F
Sbjct:  105 RLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMF 228

[Close]

BLAST of mRNA_H-elongata_contig84181.16033.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 5.730e-28
Identity = 55/125 (44.00%), Postives = 83/125 (66.40%), Query Frame = 1

Query:    1 LRMVKAEAIEALLHGCSTWTLRQKDYTKLRTVHHWVLLRIIGIQRQRPDHRMISYNFTLEITQCESIVTTLCTRRLLWAATLTQMSGGRLPKRIAFGNLEG-----RGRKEKEWTDCVQSDIRAF 360
            +R+++AEA+EALL+GC TW+     Y  LR++HH +LLR+IG +R++  +R +SY  TL+  +C+S+  T+  RRLL+A  L +   GRLPKR+  G L G     RG +E+ W  CV  D++AF
Sbjct:  149 IRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMLGELAGGEKRRRGGQEQNWPKCVLDDLKAF 273

[Close]

BLAST of mRNA_H-elongata_contig84181.16033.1 vs. uniprot
Match: A0A6H5JLT1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT1_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 9.040e-28
Identity = 55/125 (44.00%), Postives = 82/125 (65.60%), Query Frame = 1

Query:    1 LRMVKAEAIEALLHGCSTWTLRQKDYTKLRTVHHWVLLRIIGIQRQRPDHRMISYNFTLEITQCESIVTTLCTRRLLWAATLTQMSGGRLPKRIAFGNLEG-----RGRKEKEWTDCVQSDIRAF 360
            +R+++AEA+EALL+GC TW+     Y  LR++HH +L R+IG + ++  +R +SY  TLE  +C+S+  T+  RRLL+A  L +   GRLPKR+ FG L G     RG +E+ W  CV  D++AF
Sbjct:  388 IRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLFRVIGYKLKKDTYRQLSYPRTLERVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAF 512

[Close]

BLAST of mRNA_H-elongata_contig84181.16033.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.550e-27
Identity = 53/124 (42.74%), Postives = 81/124 (65.32%), Query Frame = 1

Query:    4 RMVKAEAIEALLHGCSTWTLRQKDYTKLRTVHHWVLLRIIGIQRQRPDHRMISYNFTLEITQCESIVTTLCTRRLLWAATLTQMSGGRLPKRIAFGNL-----EGRGRKEKEWTDCVQSDIRAF 360
            R+++AEA+EALL+GC TW+ R+  Y  L+T HH +LLR+IG +R+R  +R +SY   L+   C+S+  T+  RRLL+A  + +   GRLPKR+ FG L      G+G  E+ W  C++ D++ F
Sbjct:  124 RLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMF 247

[Close]

BLAST of mRNA_H-elongata_contig84181.16033.1 vs. uniprot
Match: A0A6H5JYE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE2_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 4.170e-27
Identity = 51/117 (43.59%), Postives = 77/117 (65.81%), Query Frame = 1

Query:   25 IEALLHGCSTWTLRQKDYTKLRTVHHWVLLRIIGIQRQRPDHRMISYNFTLEITQCESIVTTLCTRRLLWAATLTQMSGGRLPKRIAFGNLEG-----RGRKEKEWTDCVQSDIRAF 360
            +EALL+ C+TW+     Y  LR++HH +LLR+IG +R++  +R +SY  TL+  +C+S+  T+  RRLL+A +L +   GRLPKR+ FG L G     RG +E+ W  CV  D++AF
Sbjct:    1 MEALLYSCTTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGSLARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAF 117

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig84181.16033.1 vs. uniprot

BLAST of mRNA_H-elongata_contig84181.16033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JAH7_9PHAE	1.070e-30	45.60	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5KN66_9PHAE	8.500e-29	45.16	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5KS82_9PHAE	1.500e-28	44.80	Reverse transcriptase domain-containing protein (F...	[more]
A0A6H5KQ16_9PHAE	3.050e-28	41.46	Reverse transcriptase domain-containing protein (F...	[more]
A0A6H5KLX9_9PHAE	3.060e-28	41.35	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JLH5_9PHAE	3.230e-28	42.74	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K1X4_9PHAE	5.730e-28	44.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JLT1_9PHAE	9.040e-28	44.00	Reverse transcriptase domain-containing protein (F...	[more]
A0A6H5JWS4_9PHAE	1.550e-27	42.74	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JYE2_9PHAE	4.170e-27	43.59	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig84181	contig	H-elongata_contig84181:364..780 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Arthropoda
Seed ortholog score	72.4
Seed ortholog evalue	1.8e-10
Seed eggNOG ortholog	136037.KDR24435
EggNOG free text desc.	Ribonuclease H protein
EggNOG OGs	3AN3D@33154,3C1II@33208,3DHKC@33213,3SRQY@50557,4237N@6656,KOG1075@1,KOG1075@2759
COG Functional cat.	S
Best tax level	Insecta
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	1
Model size	417
Cds size	411
Stop	0
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931247.1643462-UTR-H-elongata_contig84181:363..369	1622931247.1643462-UTR-H-elongata_contig84181:363..369	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig84181 364..369 +
1691679758.4164789-UTR-H-elongata_contig84181:363..369	1691679758.4164789-UTR-H-elongata_contig84181:363..369	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig84181 364..369 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931247.1834521-CDS-H-elongata_contig84181:369..780	1622931247.1834521-CDS-H-elongata_contig84181:369..780	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig84181 370..780 +
1691679758.4303076-CDS-H-elongata_contig84181:369..780	1691679758.4303076-CDS-H-elongata_contig84181:369..780	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig84181 370..780 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig84181.16033.1	prot_H-elongata_contig84181.16033.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig84181 370..780 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig84181:364..780+
coding sequence from alignment at H-elongata_contig84181:364..780+

protein sequence of mRNA_H-elongata_contig84181.16033.1

>prot_H-elongata_contig84181.16033.1 ID=prot_H-elongata_contig84181.16033.1|Name=mRNA_H-elongata_contig84181.16033.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
MVKAEAIEALLHGCSTWTLRQKDYTKLRTVHHWVLLRIIGIQRQRPDHRM
ISYNFTLEITQCESIVTTLCTRRLLWAATLTQMSGGRLPKRIAFGNLEGR
GRKEKEWTDCVQSDIRAFVITGDWKATVLKAEVRGET

mRNA from alignment at H-elongata_contig84181:364..780+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig84181.16033.1 ID=mRNA_H-elongata_contig84181.16033.1|Name=mRNA_H-elongata_contig84181.16033.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=417bp|location=Sequence derived from alignment at H-elongata_contig84181:364..780+ (Himanthalia elongata Himel1 dioecious)
CTACGAATGGTAAAGGCTGAGGCAATTGAGGCCCTCCTGCATGGATGCAG
TACGTGGACCCTCCGCCAAAAAGACTACACCAAACTCCGCACCGTACACC
ACTGGGTCTTGCTTCGCATCATCGGGATACAGCGCCAGAGACCAGACCAT
CGAATGATCTCGTACAATTTTACTCTTGAAATAACCCAGTGCGAGAGCAT
TGTGACAACGCTGTGCACAAGAAGACTTTTGTGGGCGGCGACGCTCACCC
AAATGAGCGGCGGGCGGTTGCCAAAGCGAATCGCCTTCGGAAACCTTGAG
GGGAGGGGTAGGAAGGAGAAAGAGTGGACCGATTGCGTACAGAGCGACAT
TCGGGCGTTTGTCATAACGGGGGATTGGAAAGCAACTGTGTTGAAGGCTG
AGGTGCGGGGTGAGACG

Coding sequence (CDS) from alignment at H-elongata_contig84181:364..780+

>mRNA_H-elongata_contig84181.16033.1 ID=mRNA_H-elongata_contig84181.16033.1|Name=mRNA_H-elongata_contig84181.16033.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig84181:364..780+ (Himanthalia elongata Himel1 dioecious)
ATGGTAAAGGCTGAGGCAATTGAGGCCCTCCTGCATGGATGCAGTACGTG
GACCCTCCGCCAAAAAGACTACACCAAACTCCGCACCGTACACCACTGGG
TCTTGCTTCGCATCATCGGGATACAGCGCCAGAGACCAGACCATCGAATG
ATCTCGTACAATTTTACTCTTGAAATAACCCAGTGCGAGAGCATTGTGAC
AACGCTGTGCACAAGAAGACTTTTGTGGGCGGCGACGCTCACCCAAATGA
GCGGCGGGCGGTTGCCAAAGCGAATCGCCTTCGGAAACCTTGAGGGGAGG
GGTAGGAAGGAGAAAGAGTGGACCGATTGCGTACAGAGCGACATTCGGGC
GTTTGTCATAACGGGGGATTGGAAAGCAACTGTGTTGAAGGCTGAGGTGC
GGGGTGAGACGATGGTAAAGGCTGAGGCAATTGAGGCCCTCCTGCATGGA
TGCAGTACGTGGACCCTCCGCCAAAAAGACTACACCAAACTCCGCACCGT
ACACCACTGGGTCTTGCTTCGCATCATCGGGATACAGCGCCAGAGACCAG
ACCATCGAATGATCTCGTACAATTTTACTCTTGAAATAACCCAGTGCGAG
AGCATTGTGACAACGCTGTGCACAAGAAGACTTTTGTGGGCGGCGACGCT
CACCCAAATGAGCGGCGGGCGGTTGCCAAAGCGAATCGCCTTCGGAAACC
TTGAGGGGAGGGGTAGGAAGGAGAAAGAGTGGACCGATTGCGTACAGAGC
GACATTCGGGCGTTTGTCATAACGGGGGATTGGAAAGCAACTGTGTTGAA
GGCTGAGGTGCGGGGTGAGACG