mRNA_H-elongata_contig84160.16030.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE) HSP 1 Score: 146 bits (369), Expect = 6.140e-38 Identity = 76/150 (50.67%), Postives = 101/150 (67.33%), Query Frame = 1
Query: 1 PNIFKEAMSLSRAAYWKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIYMIDVQTAFLNADVDEEVFVKMTPGYERINKAGVSLAKILKKSL 450
PN K+AM L WK A KEI+SL++ VY++VP + VP ++G++WV K+K + T K+RLV +G QVPG GGTF VCRLQSIRM+ AIAAE ++ +DV+TAFL AD++E VFV+M PGYE N + L L+KSL
Sbjct: 302 PNTCKKAMELPETKLWKAATDKEIKSLQDLKVYKLVPRTDVPLGHNVIGSKWVFKVKPENTHKARLVAKGWNQVPGRDCGGTFAPVCRLQSIRMVFAIAAEKDLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKNMEELQLVMKLEKSL 451
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Match: A0A6H5KWT4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT4_9PHAE) HSP 1 Score: 137 bits (345), Expect = 4.790e-35 Identity = 73/151 (48.34%), Postives = 96/151 (63.58%), Query Frame = 1
Query: 1 PNIFKEAMSLSRAAYWKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIYMIDVQTAFLNADVDEEVFVKMTPGYERINKAGVSLAKILKKSLY 453
P +EA ++ W AA++EI SLK V+++VP + VP +K + ++WV K KADG+ K RLVVQG QVPG+ G TF VCRLQSIRM+ A + E+ +DV TAFL AD+ E VFV+ PG+E NK G L L+KSLY
Sbjct: 50 PQTIEEARAMPDGEQWNTAAEREIASLKERQVHKLVPRTAVPPGRKRIKSKWVFKRKADGSFKGRLVVQGWNQVPGLDYGSTFAPVCRLQSIRMLACTAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKNKDGGDLVMQLQKSLY 200
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE) HSP 1 Score: 134 bits (337), Expect = 1.540e-33 Identity = 71/151 (47.02%), Postives = 95/151 (62.91%), Query Frame = 1
Query: 1 PNIFKEAMSLSRAAYWKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIYMIDVQTAFLNADVDEEVFVKMTPGYERINKAGVSLAKILKKSLY 453
P +EA ++ W AA++EI SLK V+++VP + VP +K + +RWV K K DG+ K RLV QG QVPG+ G T+ VCRLQSIRM+ IA + E+ +DV TAFL AD+ E VFV+ PG+E +K G L L+KSLY
Sbjct: 836 PRTIEEARAMPDGEQWNAAAEREIASLKERQVFKLVPRTAVPPGRKRIKSRWVFKRKVDGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLY 986
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE) HSP 1 Score: 133 bits (334), Expect = 3.830e-33 Identity = 67/152 (44.08%), Postives = 101/152 (66.45%), Query Frame = 1
Query: 1 PNIFKEAMSLSRAAYWKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIYMIDVQTAFLNADVDEEVFVKMTPGYERINKA-GVSLAKILKKSLY 453
PN +K+AM+ ++ W++A KE+ SL +H V +++P+S VP+ ++GTRWV ++K DG K+R+VVQG Q GI TF VC++ S R+++AIAA G+ + +DVQTAFLN + E+V+ PG+E+I + G L LKKSLY
Sbjct: 644 PNTYKQAMNSPQSTEWEQAMLKELASLDDHDVADLIPVSSVPAGCSVIGTRWVYRVKTDGRFKARVVVQGWAQQHGIDCFTTFAPVCKIGSQRLLLAIAAAQGWPVIAMDVQTAFLNGKLSEDVYTYQAPGFEKIESSTGKPLVWKLKKSLY 795
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 132 bits (332), Expect = 7.360e-33 Identity = 69/151 (45.70%), Postives = 94/151 (62.25%), Query Frame = 1
Query: 1 PNIFKEAMSLSRAAYWKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIYMIDVQTAFLNADVDEEVFVKMTPGYERINKAGVSLAKILKKSLY 453
P +EA + A W AA++E++SL + VY++VP S VP +K + ++WV K KADGT K R+V QG QVPG+ G T+ VCR+QS+RM+ I E +DV TAFL AD+ EEVFV+ PG+E +K G + L KSLY
Sbjct: 1151 PRTIQEARASPDATKWNAAAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLY 1301
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 132 bits (332), Expect = 7.390e-33 Identity = 69/151 (45.70%), Postives = 94/151 (62.25%), Query Frame = 1
Query: 1 PNIFKEAMSLSRAAYWKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIYMIDVQTAFLNADVDEEVFVKMTPGYERINKAGVSLAKILKKSLY 453
P +EA + A W AA++E++SL + VY++VP S VP +K + ++WV K KADGT K R+V QG QVPG+ G T+ VCR+QS+RM+ I E +DV TAFL AD+ EEVFV+ PG+E +K G + L KSLY
Sbjct: 1316 PRTIQEARASPDATKWNAAAEREMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLY 1466
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE) HSP 1 Score: 132 bits (331), Expect = 9.370e-33 Identity = 70/151 (46.36%), Postives = 94/151 (62.25%), Query Frame = 1
Query: 1 PNIFKEAMSLSRAAYWKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIYMIDVQTAFLNADVDEEVFVKMTPGYERINKAGVSLAKILKKSLY 453
P +EA ++ W AA++EI SLK VY++VP + VP +K + ++WV K KA G+ K RLV QG QVPG+ G T+ VCR QSIRM+ IA + E+ +DV TAFL AD+ E VFV+ PG+E +K G L L+KSLY
Sbjct: 459 PRTIEEARAMPDGEQWNAAAEREIASLKERQVYKLVPRTAVPPGRKRIKSKWVFKRKAGGSFKGRLVAQGWNQVPGLDCGNTYAPVCRFQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLY 609
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE) HSP 1 Score: 128 bits (322), Expect = 1.080e-31 Identity = 70/152 (46.05%), Postives = 98/152 (64.47%), Query Frame = 1
Query: 1 PNIFKEAMSLSRAAYWKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIYMIDVQTAFLNADVDEEVFVKMTPGYERINKA-GVSLAKILKKSLY 453
P ++EAM A WK A KEI+SLK+H V ++VP+ +P K +G+RW+ K+KA G K+RL+VQG Q GI GGT+ V R S + +AIAAE G+++ +DV TAFL + V+EEV+V+ GYE ++ G+ L LKKSLY
Sbjct: 326 PTTYQEAMRSMDADQWKAAMDKEIRSLKDHDVADLVPVQRLPPGAKPIGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYGPVSRFSSQLVFMAIAAERGYDVETMDVVTAFLQSKVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLY 477
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE) HSP 1 Score: 129 bits (323), Expect = 1.180e-31 Identity = 70/152 (46.05%), Postives = 99/152 (65.13%), Query Frame = 1
Query: 1 PNIFKEAMSLSRAAYWKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIYMIDVQTAFLNADVDEEVFVKMTPGYERINKA-GVSLAKILKKSLY 453
P ++EAM A WK A KE++SLK+H V ++VPI +P K +G+RW+ K+KA G K+RL+VQG Q GI GGT+ V R S +++AIAAE G+ + +DV TAFL ++V+EEV+V+ GYE ++ G+ L LKKSLY
Sbjct: 890 PTTYQEAMRSMDADQWKAAMDKEMKSLKDHDVADLVPIQSLPPGAKPIGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLY 1041
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Match: A0A6H5JVC8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC8_9PHAE) HSP 1 Score: 120 bits (302), Expect = 3.890e-31 Identity = 66/140 (47.14%), Postives = 92/140 (65.71%), Query Frame = 1
Query: 37 AAYWKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKADGTCKSRLVVQGLPQVPGIKNGGTFTSVCRLQSIRMMVAIAAELGFEIYMIDVQTAFLNADVDEEVFVKMTPGYERINKA-GVSLAKILKKSLY 453
A WK A KE++SLK+H V ++VPI +P K +G+RW+ K+KA G K+RL VQG Q GI GGT+ V R S +++AIAAE G+ + +DV TAFL ++V+EEV+V+ GYE ++ G+ L LKKSLY
Sbjct: 6 ADQWKAAMDKEMRSLKDHDVADLVPIQSLPPGAKPIGSRWLYKMKATGVMKARLTVQGWGQRYGIDYGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLY 145 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84160.16030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig84160.16030.1 >prot_H-elongata_contig84160.16030.1 ID=prot_H-elongata_contig84160.16030.1|Name=mRNA_H-elongata_contig84160.16030.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp MSLSRAAYWKEAAKKEIQSLKNHGVYEIVPISFVPSFQKIVGTRWVNKIKback to top mRNA from alignment at H-elongata_contig84160:1540..1998- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig84160.16030.1 ID=mRNA_H-elongata_contig84160.16030.1|Name=mRNA_H-elongata_contig84160.16030.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=459bp|location=Sequence derived from alignment at H-elongata_contig84160:1540..1998- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig84160:1540..1998- >mRNA_H-elongata_contig84160.16030.1 ID=mRNA_H-elongata_contig84160.16030.1|Name=mRNA_H-elongata_contig84160.16030.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig84160:1540..1998- (Himanthalia elongata Himel1 dioecious)back to top |