mRNA_H-elongata_contig84131.16023.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84131.16023.1
Unique NamemRNA_H-elongata_contig84131.16023.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig84131.16023.1 vs. uniprot
Match: A0A6H5JXD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXD9_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 3.830e-15
Identity = 39/54 (72.22%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    1 RYPSILARVIWGSDLRRERETRLAAVGSLKASPSPQGPMPAWYRKLETLSCPEG 162
            R  SIL RVIWGSDLRRERE+RL AVGS KASP P GP P+W+ KLET S P G
Sbjct: 1707 RRRSILGRVIWGSDLRRERESRLVAVGSAKASPRPAGPEPSWHVKLETSSHPGG 1760
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BLAST of mRNA_H-elongata_contig84131.16023.1 vs. uniprot
Match: D8LHQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ6_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 4.140e-13
Identity = 37/54 (68.52%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 RYPSILARVIWGSDLRRERETRLAAVGSLKASPSPQGPMPAWYRKLETLSCPEG 162
            R  SIL RVIWGSDLRRERE+RL AVGS KASP P  P P W+ KLE  S P G
Sbjct: 1657 RRRSILGRVIWGSDLRRERESRLVAVGSGKASPRPASPEPGWHVKLEASSHPGG 1710
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84131.16023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXD9_9PHAE3.830e-1572.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHQ6_ECTSI4.140e-1368.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84131contigH-elongata_contig84131:1038..1923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue7.3e-11
Seed eggNOG ortholog2880.D8LHQ6
KEGG koko:K03514
KEGG Pathwayko03018,map03018
KEGG ModuleM00393
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG1906@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_002690.1
EC2.7.7.19
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931246.2709637-CDS-H-elongata_contig84131:1037..10901622931246.2709637-CDS-H-elongata_contig84131:1037..1090Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84131 1038..1090 -
1691679758.0201638-CDS-H-elongata_contig84131:1037..10901691679758.0201638-CDS-H-elongata_contig84131:1037..1090Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84131 1038..1090 -
1622931246.2879913-CDS-H-elongata_contig84131:1814..19231622931246.2879913-CDS-H-elongata_contig84131:1814..1923Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84131 1815..1923 -
1691679758.03443-CDS-H-elongata_contig84131:1814..19231691679758.03443-CDS-H-elongata_contig84131:1814..1923Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84131 1815..1923 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84131.16023.1prot_H-elongata_contig84131.16023.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84131 1038..1923 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84131.16023.1

>prot_H-elongata_contig84131.16023.1 ID=prot_H-elongata_contig84131.16023.1|Name=mRNA_H-elongata_contig84131.16023.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
RYPSILARVIWGSDLRRERETRLAAVGSLKASPSPQGPMPAWYRKLETLS
CPEG
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mRNA from alignment at H-elongata_contig84131:1038..1923-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84131.16023.1 ID=mRNA_H-elongata_contig84131.16023.1|Name=mRNA_H-elongata_contig84131.16023.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=886bp|location=Sequence derived from alignment at H-elongata_contig84131:1038..1923- (Himanthalia elongata Himel1 dioecious)
CGATATCCATCGATCCTTGCACGCGTTATCTGGGGGTCGGATCTACGCAG
AGAGCGCGAGACCAGGCTTGCTGCCGTGGGCTCTCTGAAAGCGAGTCCTT
CCCCACAAGGTGAACGTTTTTTTTCATTTTCATTTTTTTTTAATTAATTT
CTCACATAAGCCTATGTCAAAATCTACCTCATGCTCAAAAGGAAGAATAA
CCACCATCCGGAAAGAGAAAAACGTTTAACGTACTCTCAGTACCATTATT
GCCGTTTCCTTTTGTATTGGAGAGTACCTTGAACGTTTTTCTCCTTTCCG
GATGGTTTTTTCTACCTTGTGACCACGGGCTGGATTTTGACATCAGCTCA
TGTGATATATCAATAAAAATAAATAAATAAAACCTGTAGAGCAAGTGCTG
GTACTTTAGTTCAAAAAATATATACTAATTTTAGTATGCCATCCTTGACG
TGAAAGGAAATGTATGCTGCAAGCTACGGTGGAATAGTTACATTTCGTTG
TTTTATACAATCAAGGACAAGCCTATTTTTTTACTAACGCTCCAGCACCC
AGCACCCTGTACACTTCGAGGCCGTGTACGTCAATCAAAATTTTGAGAAT
GACGCCATCAAAAGCTGTGGCATCCCTCTAATCTGTGTGGAATTTTTAGA
ATCATGCTCGATCGAAAACGCTGTCCAATTCTTCTACATTACCTGAATAC
CCTCCGCTCATAATGCAGCACACAGCACTTGCGTAGTCTATCCCCGCTCT
TCCTTCTATACTGTATTTATCTGTACCTTGTACTCTTCCGGCACTGTCTT
GTACCCTATTTTGTCCTACTGTACCTTACACAGGACCAATGCCGGCATGG
TATCGGAAGCTGGAAACGCTGTCTTGTCCAGAGGGT
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Coding sequence (CDS) from alignment at H-elongata_contig84131:1038..1923-

>mRNA_H-elongata_contig84131.16023.1 ID=mRNA_H-elongata_contig84131.16023.1|Name=mRNA_H-elongata_contig84131.16023.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig84131:1038..1923- (Himanthalia elongata Himel1 dioecious)
CGATATCCATCGATCCTTGCACGCGTTATCTGGGGGTCGGATCTACGCAG
AGAGCGCGAGACCAGGCTTGCTGCCGTGGGCTCTCTGAAAGCGAGTCCTT
CCCCACAAGCGATATCCATCGATCCTTGCACGCGTTATCTGGGGGTCGGA
TCTACGCAGAGAGCGCGAGACCAGGCTTGCTGCCGTGGGCTCTCTGAAAG
CGAGTCCTTCCCCACAAGGACCAATGCCGGCATGGTATCGGAAGCTGGAA
ACGCTGTCTTGTCCAGAGGGTGACCAATGCCGGCATGGTATCGGAAGCTG
GAAACGCTGTCTTGTCCAGAGGGT
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