mRNA_H-elongata_contig84072.16017.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig84072.16017.1
Unique NamemRNA_H-elongata_contig84072.16017.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig84072.16017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig84072contigH-elongata_contig84072:2..995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_002110.1
Exons2
Model size635
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig84072.16017.1prot_H-elongata_contig84072.16017.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig84072 260..981 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931245.413419-UTR-H-elongata_contig84072:1..2591622931245.413419-UTR-H-elongata_contig84072:1..259Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84072 2..259 -
1691679757.5906713-UTR-H-elongata_contig84072:1..2591691679757.5906713-UTR-H-elongata_contig84072:1..259Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84072 2..259 -
1622931245.459586-UTR-H-elongata_contig84072:981..9951622931245.459586-UTR-H-elongata_contig84072:981..995Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84072 982..995 -
1691679757.6175847-UTR-H-elongata_contig84072:981..9951691679757.6175847-UTR-H-elongata_contig84072:981..995Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig84072 982..995 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931245.4295282-CDS-H-elongata_contig84072:259..5801622931245.4295282-CDS-H-elongata_contig84072:259..580Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84072 260..580 -
1691679757.600974-CDS-H-elongata_contig84072:259..5801691679757.600974-CDS-H-elongata_contig84072:259..580Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84072 260..580 -
1622931245.4419065-CDS-H-elongata_contig84072:939..9811622931245.4419065-CDS-H-elongata_contig84072:939..981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84072 940..981 -
1691679757.6092412-CDS-H-elongata_contig84072:939..9811691679757.6092412-CDS-H-elongata_contig84072:939..981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig84072 940..981 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig84072.16017.1

>prot_H-elongata_contig84072.16017.1 ID=prot_H-elongata_contig84072.16017.1|Name=mRNA_H-elongata_contig84072.16017.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
MRKNELEAVETARKAYAELEKRNAEIERLRAALSDGEAGATKQQSTIATG
VALPSNGVTTPPLRVSGKQQFCGGSRYSMSEEGVAEDEASAEEEEEEPQR
GGGLFGWLTGSSRKKRRREE*
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mRNA from alignment at H-elongata_contig84072:2..995-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig84072.16017.1 ID=mRNA_H-elongata_contig84072.16017.1|Name=mRNA_H-elongata_contig84072.16017.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=994bp|location=Sequence derived from alignment at H-elongata_contig84072:2..995- (Himanthalia elongata Himel1 dioecious)
CGGAGAAGGAGGACATGAGGAAGAACGAACTGGAGGCGGTGGAGACGGCA
CGGAAGGTAGCACATTAGTATATCAGTACTAAACGACTCCGGCCTTACCC
ACTGATGTAGAGCTAGAGCTGTCTAGTGATGGAACTACTGCTGGACACAT
ACGTTCCGTCTGGAATGCCTACTGGTACAGTCGATCGATCTCCCCACCTC
TACCGCCAATATCCTTGTTGGAAACCCCTCGATTTTTTGTGAGGTCAAGA
CGTGCGTGCCCCACTCCGGAGTTTTACTGTTGAGCACTTTTCGTAGTATG
TTCATCCAGTTTACGGCCTTTTTTGCATCTCTTGTTTTTGGTTATTTTTC
TATCATGCCTTTCGCGATGACTCCGCTCTTTGGCAACGTGACGGGGTATT
CCACGTTATTTTCAGGCGTACGCGGAACTCGAGAAACGGAACGCCGAGAT
CGAAAGACTCAGAGCAGCCCTGAGTGATGGCGAAGCAGGAGCGACGAAGC
AACAGTCGACGATCGCGACGGGAGTTGCTCTACCTTCGAATGGCGTTACG
ACGCCGCCGCTGAGGGTCAGCGGAAAGCAACAGTTTTGCGGGGGCTCGAG
GTACTCCATGTCGGAAGAAGGTGTCGCAGAGGACGAAGCTTCCGCCGAGG
AAGAGGAAGAGGAACCTCAGCGCGGGGGGGGGCTTTTCGGTTGGTTGACG
GGAAGCTCGAGAAAGAAGCGTCGCCGGGAGGAATGAATGAATCAATGGGA
GACATCATAGGGAATTTCAGTATATAGAACATGGGCGGGGGCGCGCAAGG
TACCTTCTTCCTTCATTATCGCTCTATAAATACATGTAGGCATATATTGT
ATAATATTTATAATATACTGCGATGCCGTACCACGCAGATTGTACCACGC
AGATTGTTCGTTGTGTAATGAAATCATCGCGGTGTTGATTGCGGTAGGAT
ATGGTGCTTAGCGAGGTTATTAGTCAAAGTACACGGCCGAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig84072:2..995-

>mRNA_H-elongata_contig84072.16017.1 ID=mRNA_H-elongata_contig84072.16017.1|Name=mRNA_H-elongata_contig84072.16017.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig84072:2..995- (Himanthalia elongata Himel1 dioecious)
ATGAGGAAGAACGAACTGGAGGCGGTGGAGACGGCACGGAAGATGAGGAA
GAACGAACTGGAGGCGGTGGAGACGGCACGGAAGGCGTACGCGGAACTCG
AGAAACGGAACGCCGAGATCGAAAGACTCAGAGCAGCCCTGAGTGATGGC
GAAGCAGGAGCGACGAAGCAACAGTCGACGATCGCGACGGGAGTTGCTCT
ACCTTCGAATGGCGTTACGACGCCGCCGCTGAGGGTCAGCGGAAAGCAAC
AGTTTTGCGGGGGCTCGAGGTACTCCATGTCGGAAGAAGGTGTCGCAGAG
GACGAAGCTTCCGCCGAGGAAGAGGAAGAGGAACCTCAGCGCGGGGGGGG
GCTTTTCGGTTGGTTGACGGGAAGCTCGAGAAAGAAGCGTCGCCGGGAGG
AATGAGCGTACGCGGAACTCGAGAAACGGAACGCCGAGATCGAAAGACTC
AGAGCAGCCCTGAGTGATGGCGAAGCAGGAGCGACGAAGCAACAGTCGAC
GATCGCGACGGGAGTTGCTCTACCTTCGAATGGCGTTACGACGCCGCCGC
TGAGGGTCAGCGGAAAGCAACAGTTTTGCGGGGGCTCGAGGTACTCCATG
TCGGAAGAAGGTGTCGCAGAGGACGAAGCTTCCGCCGAGGAAGAGGAAGA
GGAACCTCAGCGCGGGGGGGGGCTTTTCGGTTGGTTGACGGGAAGCTCGA
GAAAGAAGCGTCGCCGGGAGGAATGA
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