mRNA_H-elongata_contig120850.1602.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig120850.1602.1 vs. uniprot
Match: D7FM35_ECTSI (tRNA-dihydrouridine synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM35_ECTSI) HSP 1 Score: 265 bits (676), Expect = 7.860e-86 Identity = 124/148 (83.78%), Postives = 138/148 (93.24%), Query Frame = 1
Query: 1 MVEHTDAHRFSVAPMMAVTDRYFRYLFRQLSRRSKLYTEMLVDSTLLHQQDNLWHFLGHCSSDGPTAVQLGGNNTDSLAVAAEMCEQWEYDEINLNCGCPSTKVADRCFGARLMLDPERVREITYGMIRKVTRTPVTVKCRIGVDDRD 444
M++H++AHRFSVAPMMAVTDRYFRYLFRQLSRRSKLYTEM VD TLLHQQDNL +FL H +++GP AVQLGGN+ D+LA AAEMCEQW + EINLNCGCPS+KV+DRCFGARLMLDPERVREITYGMIRKVTRTPVTVKCRIGVDD+D
Sbjct: 1 MMDHSNAHRFSVAPMMAVTDRYFRYLFRQLSRRSKLYTEMYVDKTLLHQQDNLHNFLSHRAAEGPLAVQLGGNDPDTLAEAAEMCEQWAFSEINLNCGCPSSKVSDRCFGARLMLDPERVREITYGMIRKVTRTPVTVKCRIGVDDKD 148
BLAST of mRNA_H-elongata_contig120850.1602.1 vs. uniprot
Match: A0A7S0DBX9_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DBX9_9EUKA) HSP 1 Score: 186 bits (473), Expect = 1.040e-53 Identity = 89/147 (60.54%), Postives = 110/147 (74.83%), Query Frame = 1
Query: 4 VEHTDAHRFSVAPMMAVTDRYFRYLFRQLSRRSKLYTEMLVDSTLLHQQDNLWHFLGHCSSDGPTAVQLGGNNTDSLAVAAEMCEQWEYDEINLNCGCPSTKVADRCFGARLMLDPERVREITYGMIRKVTRTPVTVKCRIGVDDRD 444
V+ D R S+APMM T+R+FRY R +++ +KLYTEMLVD TL+HQ+DNL FLG S+ P QLGG+ D LA AA MCE W YDEINLNCGCPS KV+ RCFGARLML P+ VR+IT+ M R+V + PVTVKCR+G D++D
Sbjct: 116 VKEIDHDRLSIAPMMQWTNRHFRYFLRLMTKHTKLYTEMLVDDTLIHQKDNLRRFLGFNPSEHPVVCQLGGSEPDKLAEAAAMCESWGYDEINLNCGCPSKKVSGRCFGARLMLKPDLVRQITHAMRRRV-QIPVTVKCRLGADNKD 261
BLAST of mRNA_H-elongata_contig120850.1602.1 vs. uniprot
Match: A0A067CH99_SAPPC (Dus domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CH99_SAPPC) HSP 1 Score: 181 bits (460), Expect = 1.650e-53 Identity = 87/141 (61.70%), Postives = 111/141 (78.72%), Query Frame = 1
Query: 25 RFSVAPMMAVTDRYFRYLFRQLSRRSKLYTEMLVDSTLLHQQDNLWHFLGHCSSDGPTAVQLGGNNTDSLAVAAEMCEQW-EYDEINLNCGCPSTKVADRCFGARLMLDPERVREITYGMIRKVTRTPVTVKCRIGVDDRD 444
R SVAPMM TDR++R++ RQ++R++ LYTEM+VD TLLHQ+DNL +FLGH + + P A+QLGGN+ +SL A M E + + EINLN GCPS KV+ +CFGARLML+PE VR+I Y MIR+V TP+TVKCRIGVDD D
Sbjct: 9 RLSVAPMMDWTDRHYRFMMRQITRKTLLYTEMVVDQTLLHQKDNLDYFLGHDNIEHPLALQLGGNDVESLGTVARMAETYGNFHEINLNVGCPSPKVSSQCFGARLMLNPELVRDICYEMIRQVASTPITVKCRIGVDDLD 149
BLAST of mRNA_H-elongata_contig120850.1602.1 vs. uniprot
Match: T0RFX9_SAPDV (Dus domain-containing protein n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0RFX9_SAPDV) HSP 1 Score: 179 bits (454), Expect = 1.400e-52 Identity = 86/141 (60.99%), Postives = 109/141 (77.30%), Query Frame = 1
Query: 25 RFSVAPMMAVTDRYFRYLFRQLSRRSKLYTEMLVDSTLLHQQDNLWHFLGHCSSDGPTAVQLGGNNTDSLAVAAEMCEQW-EYDEINLNCGCPSTKVADRCFGARLMLDPERVREITYGMIRKVTRTPVTVKCRIGVDDRD 444
R SVAPMM TDR++R++ RQ++R++ LYTEM+VD TLLHQ+DNL +FLGH + P A+QLGGN+ SL A M E + + EINLN GCPS KV+ +CFGARLML+PE VR++ Y MIR+V TP+TVKCRIGVDD D
Sbjct: 14 RLSVAPMMDWTDRHYRFMMRQITRKTLLYTEMVVDQTLLHQKDNLDYFLGHDDIEHPLALQLGGNDVKSLGTVARMAETYGNFHEINLNVGCPSPKVSSQCFGARLMLNPELVRDLCYEMIRQVASTPITVKCRIGVDDLD 154
BLAST of mRNA_H-elongata_contig120850.1602.1 vs. uniprot
Match: A0A6G0XXM5_9STRA (tRNA-dihydrouridine synthase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXM5_9STRA) HSP 1 Score: 172 bits (437), Expect = 3.320e-50 Identity = 83/141 (58.87%), Postives = 110/141 (78.01%), Query Frame = 1
Query: 25 RFSVAPMMAVTDRYFRYLFRQLSRRSKLYTEMLVDSTLLHQQDNLWHFLGHCSSDGPTAVQLGGNNTDSLAVAAEMCEQW-EYDEINLNCGCPSTKVADRCFGARLMLDPERVREITYGMIRKVTRTPVTVKCRIGVDDRD 444
R SVAPMM TDR++R++ RQ++R++ LYTEM+VD TL+HQ+ NL +FLGH +++ P A+QLGGN+ ++L A+M + + EINLN GCPS KV+ RCFGARLMLDP VR+I Y M R+VT TP+TVKCR+GVDD D
Sbjct: 14 RLSVAPMMDWTDRHYRFMMRQITRKTLLYTEMVVDETLMHQKHNLDYFLGHDAAEYPLALQLGGNDPETLGEVAKMAAAYGNFHEINLNVGCPSPKVSKRCFGARLMLDPILVRDICYEMRRQVTSTPITVKCRLGVDDFD 154
BLAST of mRNA_H-elongata_contig120850.1602.1 vs. uniprot
Match: A0A024U4H1_9STRA (Dus domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U4H1_9STRA) HSP 1 Score: 169 bits (427), Expect = 1.730e-49 Identity = 82/148 (55.41%), Postives = 111/148 (75.00%), Query Frame = 1
Query: 4 VEHTDAHRFSVAPMMAVTDRYFRYLFRQLSRRSKLYTEMLVDSTLLHQQDNLWHFLGHCSSDGPTAVQLGGNNTDSLAVAAEMCEQW-EYDEINLNCGCPSTKVADRCFGARLMLDPERVREITYGMIRKVTRTPVTVKCRIGVDDRD 444
+EH R SVAPMM TDR++RY+ R ++RR+ LYTEM+VD T++HQ+ NL +FLGH + + P A+Q+GG+N ++L A+M E + + EIN+N GCPS KV+ CFGARLML+P VR+I Y M R+VT TP+TVKCR+GVDD D
Sbjct: 7 IEHAPT-RLSVAPMMDWTDRHYRYMMRLITRRTLLYTEMVVDETIMHQKHNLDYFLGHDAVEYPLALQVGGSNPETLGEVAKMAESYGRFHEININVGCPSPKVSRGCFGARLMLNPSLVRDICYEMRRQVTSTPITVKCRLGVDDFD 153
BLAST of mRNA_H-elongata_contig120850.1602.1 vs. uniprot
Match: W4H8Y4_9STRA (Dus domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H8Y4_9STRA) HSP 1 Score: 171 bits (432), Expect = 3.170e-49 Identity = 83/141 (58.87%), Postives = 107/141 (75.89%), Query Frame = 1
Query: 25 RFSVAPMMAVTDRYFRYLFRQLSRRSKLYTEMLVDSTLLHQQDNLWHFLGHCSSDGPTAVQLGGNNTDSLAVAAEMCEQW-EYDEINLNCGCPSTKVADRCFGARLMLDPERVREITYGMIRKVTRTPVTVKCRIGVDDRD 444
R SVAPMM TDR++RY+ R ++RR+ LYTEM+VD+TL+HQ+ NL +FLGH S + P A+QLGG+N L A+M E + + EIN+N GCPS KV+ CFGARLMLDP VR+I + M R+VT TP+TVKCR+GVDD D
Sbjct: 13 RLSVAPMMDWTDRHYRYMMRLITRRTLLYTEMVVDATLMHQKHNLDYFLGHDSLEHPLALQLGGSNPAMLGEVAKMAESYGSFHEININVGCPSPKVSKNCFGARLMLDPAHVRDICHEMRRQVTSTPITVKCRLGVDDFD 153
BLAST of mRNA_H-elongata_contig120850.1602.1 vs. uniprot
Match: A0A024U3Z1_9STRA (Dus domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U3Z1_9STRA) HSP 1 Score: 169 bits (427), Expect = 1.690e-48 Identity = 82/148 (55.41%), Postives = 111/148 (75.00%), Query Frame = 1
Query: 4 VEHTDAHRFSVAPMMAVTDRYFRYLFRQLSRRSKLYTEMLVDSTLLHQQDNLWHFLGHCSSDGPTAVQLGGNNTDSLAVAAEMCEQW-EYDEINLNCGCPSTKVADRCFGARLMLDPERVREITYGMIRKVTRTPVTVKCRIGVDDRD 444
+EH R SVAPMM TDR++RY+ R ++RR+ LYTEM+VD T++HQ+ NL +FLGH + + P A+Q+GG+N ++L A+M E + + EIN+N GCPS KV+ CFGARLML+P VR+I Y M R+VT TP+TVKCR+GVDD D
Sbjct: 7 IEHAPT-RLSVAPMMDWTDRHYRYMMRLITRRTLLYTEMVVDETIMHQKHNLDYFLGHDAVEYPLALQVGGSNPETLGEVAKMAESYGRFHEININVGCPSPKVSRGCFGARLMLNPSLVRDICYEMRRQVTSTPITVKCRLGVDDFD 153
BLAST of mRNA_H-elongata_contig120850.1602.1 vs. uniprot
Match: A0A1V9ZQ72_9STRA (tRNA-dihydrouridine synthase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZQ72_9STRA) HSP 1 Score: 167 bits (422), Expect = 8.560e-48 Identity = 77/141 (54.61%), Postives = 107/141 (75.89%), Query Frame = 1
Query: 25 RFSVAPMMAVTDRYFRYLFRQLSRRSKLYTEMLVDSTLLHQQDNLWHFLGHCSSDGPTAVQLGGNNTDSLAVAAEMCEQW-EYDEINLNCGCPSTKVADRCFGARLMLDPERVREITYGMIRKVTRTPVTVKCRIGVDDRD 444
R SVAPMM TDR++R++ R +++++ LYTEM+VD TLLHQQ N +FLGH + P A+Q+GG++ ++L A++ + + EINLN GCPS +V+ CFGARLML+PE VR+I Y MIR+V+ TP+TVKCRIGVD+ D
Sbjct: 9 RLSVAPMMDWTDRHYRFMMRHITKKTLLYTEMVVDKTLLHQQQNFDYFLGHDDIEHPLALQIGGSDVETLGTVAKLASNYANFHEINLNVGCPSPRVSSGCFGARLMLNPELVRDICYEMIRQVSSTPITVKCRIGVDEND 149
BLAST of mRNA_H-elongata_contig120850.1602.1 vs. uniprot
Match: K3X2Z4_GLOUD (tRNA-dihydrouridine synthase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2Z4_GLOUD) HSP 1 Score: 167 bits (422), Expect = 8.760e-48 Identity = 85/145 (58.62%), Postives = 106/145 (73.10%), Query Frame = 1
Query: 25 RFSVAPMMAVTDRYFRYLFRQLSRRSKLYTEMLVDSTLLHQQDNLWHFLGHCSSDGPTAVQLGGNNTDSLAVAAEMCEQWE-YDEINLNCGCPSTKVADRCFGARLMLDPERVREITYGMIRKV---TRTP-VTVKCRIGVDDRD 444
R S+APMM TDR++RY+ R +++ + LYTEMLVD TL+HQQ NL +FLGH S + P A+QLGGNN + L A++ + + EINLN GCPS+ V+ RCFGARLML+PERVR+I MIR V T P VTVKCRIGVDD D
Sbjct: 10 RLSIAPMMDWTDRHYRYMMRLITKNTLLYTEMLVDQTLMHQQKNLDYFLGHDSVEAPLALQLGGNNVEDLGAVAKLSNDYGGFCEINLNAGCPSSLVSSRCFGARLMLEPERVRDICSSMIRNVAPSTNVPDVTVKCRIGVDDHD 154 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig120850.1602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig120850.1602.1 >prot_H-elongata_contig120850.1602.1 ID=prot_H-elongata_contig120850.1602.1|Name=mRNA_H-elongata_contig120850.1602.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp MVEHTDAHRFSVAPMMAVTDRYFRYLFRQLSRRSKLYTEMLVDSTLLHQQback to top mRNA from alignment at H-elongata_contig120850:208..1904+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig120850.1602.1 ID=mRNA_H-elongata_contig120850.1602.1|Name=mRNA_H-elongata_contig120850.1602.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1697bp|location=Sequence derived from alignment at H-elongata_contig120850:208..1904+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig120850:208..1904+ >mRNA_H-elongata_contig120850.1602.1 ID=mRNA_H-elongata_contig120850.1602.1|Name=mRNA_H-elongata_contig120850.1602.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at H-elongata_contig120850:208..1904+ (Himanthalia elongata Himel1 dioecious)back to top |