mRNA_H-elongata_contig8400.16011.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8400.16011.1
Unique NamemRNA_H-elongata_contig8400.16011.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig8400.16011.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 227 bits (579), Expect = 7.620e-68
Identity = 106/228 (46.49%), Postives = 152/228 (66.67%), Query Frame = 1 
Query:    1 IGHMNPRNIDLLCRKERTGVNYTGTVSDYDICAVTKSRQQAHPETTTRKTSKLMELFYTDFIGPITPAAER---GFKYISMFPNDFSRMKDIFILKSKI*AAKSLHQYNMAVVVPLGLRIETIRCDKGGEYSGREFNTRCIKAGINVEYTATNTPQQNGVFKRDEQTFSRIMRCLMKDGNFSVSLWEEIFLTATYLSNRFPYSTLGGATPYSKMHKKEADMTGLRTIG 675
            +GH+N R++D+L +   TGV+Y  ++S   +C + K +Q  HP+ +TR+ S+  +L   D +GP+ P A+     F Y     +D+++MK++++L+ K    +++H YNM V    G RIETIRCDKGGE +G EF   C  + I +EY ATNTPQQ GV +RD QT + + RCL+KDG+F  S+W E+ LTA YL NR P+S LGGATPYSK+H K  D++GLR IG
Sbjct:   49 LGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDNCKNSAIKLEYAATNTPQQLGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIG 276
[Close]
BLAST of mRNA_H-elongata_contig8400.16011.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 7.260e-66
Identity = 105/228 (46.05%), Postives = 151/228 (66.23%), Query Frame = 1 
Query:    1 IGHMNPRNIDLLCRKERTGVNYTGTVSDYDICAVTKSRQQAHPETTTRKTSKLMELFYTDFIGPITPAAER---GFKYISMFPNDFSRMKDIFILKSKI*AAKSLHQYNMAVVVPLGLRIETIRCDKGGEYSGREFNTRCIKAGINVEYTATNTPQQNGVFKRDEQTFSRIMRCLMKDGNFSVSLWEEIFLTATYLSNRFPYSTLGGATPYSKMHKKEADMTGLRTIG 675
            +GH+N R++D+L +   TGV+Y  ++S   +C + K +Q  HP+ +TR+ S+  +L   D +GP+ P A+     F Y     +D+++MK++++L+ K    +++H YNM V    G RIETIRCDKGGE +G EF   C  + I +EY ATNTPQQ G  +RD QT + + RCL+KDG+F  S+W E+ LTA YL NR P+S LGGATPYSK+H K  D++GLR IG
Sbjct:  425 LGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGASERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIG 652
[Close]
BLAST of mRNA_H-elongata_contig8400.16011.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 226 bits (577), Expect = 7.560e-66
Identity = 106/228 (46.49%), Postives = 152/228 (66.67%), Query Frame = 1 
Query:    1 IGHMNPRNIDLLCRKERTGVNYTGTVSDYDICAVTKSRQQAHPETTTRKTSKLMELFYTDFIGPITPAAER---GFKYISMFPNDFSRMKDIFILKSKI*AAKSLHQYNMAVVVPLGLRIETIRCDKGGEYSGREFNTRCIKAGINVEYTATNTPQQNGVFKRDEQTFSRIMRCLMKDGNFSVSLWEEIFLTATYLSNRFPYSTLGGATPYSKMHKKEADMTGLRTIG 675
            +GH+N R++D+L +   TGV+Y  ++S   +C + K +Q  HP+ +TR+ S+  +L   D +GP+ P A+     F Y     +D+++MK++++L+ K    +++H YNM V    G RIETIRCDKGGE +G EF   C  + I +EY ATNTPQQ GV +RD QT + + RCL+KDG+F  S+W E+ LTA YL NR P+S LGGATPYSK+H K  D++GLR IG
Sbjct:   49 LGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIG 276
[Close]
BLAST of mRNA_H-elongata_contig8400.16011.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 226 bits (577), Expect = 9.820e-65
Identity = 106/228 (46.49%), Postives = 152/228 (66.67%), Query Frame = 1 
Query:    1 IGHMNPRNIDLLCRKERTGVNYTGTVSDYDICAVTKSRQQAHPETTTRKTSKLMELFYTDFIGPITPAAER---GFKYISMFPNDFSRMKDIFILKSKI*AAKSLHQYNMAVVVPLGLRIETIRCDKGGEYSGREFNTRCIKAGINVEYTATNTPQQNGVFKRDEQTFSRIMRCLMKDGNFSVSLWEEIFLTATYLSNRFPYSTLGGATPYSKMHKKEADMTGLRTIG 675
            +GH+N R++D+L +   TGV+Y  ++S   +C + K +Q  HP+ +TR+ S+  +L   D +GP+ P A+     F Y     +D+++MK++++L+ K    +++H YNM V    G RIETIRCDKGGE +G EF   C  + I +EY ATNTPQQ GV +RD QT + + RCL+KDG+F  S+W E+ LTA YL NR P+S LGGATPYSK+H K  D++GLR IG
Sbjct:   49 LGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIG 276
[Close]
BLAST of mRNA_H-elongata_contig8400.16011.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 226 bits (577), Expect = 1.250e-64
Identity = 106/228 (46.49%), Postives = 152/228 (66.67%), Query Frame = 1 
Query:    1 IGHMNPRNIDLLCRKERTGVNYTGTVSDYDICAVTKSRQQAHPETTTRKTSKLMELFYTDFIGPITPAAER---GFKYISMFPNDFSRMKDIFILKSKI*AAKSLHQYNMAVVVPLGLRIETIRCDKGGEYSGREFNTRCIKAGINVEYTATNTPQQNGVFKRDEQTFSRIMRCLMKDGNFSVSLWEEIFLTATYLSNRFPYSTLGGATPYSKMHKKEADMTGLRTIG 675
            +GH+N R++D+L +   TGV+Y  ++S   +C + K +Q  HP+ +TR+ S+  +L   D +GP+ P A+     F Y     +D+++MK++++L+ K    +++H YNM V    G RIETIRCDKGGE +G EF   C  + I +EY ATNTPQQ GV +RD QT + + RCL+KDG+F  S+W E+ LTA YL NR P+S LGGATPYSK+H K  D++GLR IG
Sbjct:   49 LGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIG 276
[Close]
BLAST of mRNA_H-elongata_contig8400.16011.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 1.610e-64
Identity = 105/228 (46.05%), Postives = 151/228 (66.23%), Query Frame = 1 
Query:    1 IGHMNPRNIDLLCRKERTGVNYTGTVSDYDICAVTKSRQQAHPETTTRKTSKLMELFYTDFIGPITPAAER---GFKYISMFPNDFSRMKDIFILKSKI*AAKSLHQYNMAVVVPLGLRIETIRCDKGGEYSGREFNTRCIKAGINVEYTATNTPQQNGVFKRDEQTFSRIMRCLMKDGNFSVSLWEEIFLTATYLSNRFPYSTLGGATPYSKMHKKEADMTGLRTIG 675
            +GH+N R++D+L +   TGV+Y  ++S   +C + K +Q  HP+ +TR+ S+  +L   D +GP+ P A+     F Y     +D+++MK++++L+ K    +++H YNM V    G RIETIRCDKGGE +G EF   C  + I +EY ATNTPQQ G  +RD QT + + RCL+KDG+F  S+W E+ LTA YL NR P+S LGGATPYSK+H K  D++GLR IG
Sbjct:   49 LGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGGSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIG 276
[Close]
BLAST of mRNA_H-elongata_contig8400.16011.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 220 bits (560), Expect = 2.260e-64
Identity = 104/228 (45.61%), Postives = 150/228 (65.79%), Query Frame = 1 
Query:    1 IGHMNPRNIDLLCRKERTGVNYTGTVSDYDICAVTKSRQQAHPETTTRKTSKLMELFYTDFIGPITPAAER---GFKYISMFPNDFSRMKDIFILKSKI*AAKSLHQYNMAVVVPLGLRIETIRCDKGGEYSGREFNTRCIKAGINVEYTATNTPQQNGVFKRDEQTFSRIMRCLMKDGNFSVSLWEEIFLTATYLSNRFPYSTLGGATPYSKMHKKEADMTGLRTIG 675
            +GH+N R++D+L +   T V+Y  ++S   +C + K +Q  HP+ +TR+ S+  +L   D +GP+ P A+     F Y     +D+++MK++++L+ K    +++H YNM V    G RIETIRCDKGGE +G EF   C  + I +EY ATNTPQQ GV +RD QT + + RCL+KDG+F  S+W E+ LTA YL NR P+S LGGATPYSK+  K  D++GLR IG
Sbjct:  373 LGHLNARSLDILRKDTGTEVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKVTDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLRNKSPDLSGLRVIG 600
[Close]
BLAST of mRNA_H-elongata_contig8400.16011.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 1.080e-63
Identity = 112/221 (50.68%), Postives = 149/221 (67.42%), Query Frame = 1 
Query:    1 IGHMNPRNIDLLCRKERTGVNYTGTVSDYDICAVTKSRQQAHPETTTRKTSKLMELFYTDFIGPITPAAERGFKYISMFPNDFSRMKDIFILKSKI*AAKSLHQYNMAVVVPLGLRIETIRCDKGGEYSGREFNTRCIKAGINVEYTATNTPQQNGVFKRDEQTFSRIMRCLMKDGNFSVSLWEEIFLTATYLSNRFPYSTLGGATPYSKMHKKEADMTGL 663
            + H+N R+++LL +KE  GV+++ +++  DICA++KSRQ AHPE T R+T+  M+L YTD +G  TP A+ GF Y+S F + +S MK+I++LK+     ++LH YNM V  PLG RIE IRC+ GGE    EF    + + I +EY ATNTPQQNGV +RD QT + I R LMKDG F  +LW E  +TA YLSNR P STLGG TPY KM+      T L
Sbjct:  315 LRHLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTNRETTAPMQLVYTDNMGKTTPLAKGGFGYVSKFTDAYSWMKEIYLLKAISETVRALHAYNMQVAAPLGRRIEIIRCESGGENVANEFTKYFMDSDITIEYAATNTPQQNGVSERDGQTLTTITRYLMKDGAFPPTLWREQMMTAEYLSNRPPRSTLGGVTPYFKMYNTARKRTCL 535
[Close]
BLAST of mRNA_H-elongata_contig8400.16011.1 vs. uniprot
Match: A0A6H5JSL6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL6_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 1.200e-63
Identity = 105/228 (46.05%), Postives = 149/228 (65.35%), Query Frame = 1 
Query:    1 IGHMNPRNIDLLCRKERTGVNYTGTVSDYDICAVTKSRQQAHPETTTRKTSKLMELFYTDFIGPITPAAER---GFKYISMFPNDFSRMKDIFILKSKI*AAKSLHQYNMAVVVPLGLRIETIRCDKGGEYSGREFNTRCIKAGINVEYTATNTPQQNGVFKRDEQTFSRIMRCLMKDGNFSVSLWEEIFLTATYLSNRFPYSTLGGATPYSKMHKKEADMTGLRTIG 675
            +GH+N R++D+L +   TGV+Y  ++S   +C + K +Q  HP+ +TR+ S+  +L   D +GP  P A+     F Y     +D+++MK++++L+ K    +++H YNM V    G RIE IRCDKGGE +G EF   C  + I +EY ATNTPQQ GV +RD QT + + RCL+KDG+F  S+W E+ LTA YL NR P+S LGGATPYSK+H K  D+ GLR IG
Sbjct:  245 LGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRSGQLVVIDNMGPANPPAKYQGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIEAIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLLGLRVIG 472
[Close]
BLAST of mRNA_H-elongata_contig8400.16011.1 vs. uniprot
Match: A0A6H5J8P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8P7_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 8.270e-63
Identity = 104/228 (45.61%), Postives = 150/228 (65.79%), Query Frame = 1 
Query:    1 IGHMNPRNIDLLCRKERTGVNYTGTVSDYDICAVTKSRQQAHPETTTRKTSKLMELFYTDFIGPITPAAER---GFKYISMFPNDFSRMKDIFILKSKI*AAKSLHQYNMAVVVPLGLRIETIRCDKGGEYSGREFNTRCIKAGINVEYTATNTPQQNGVFKRDEQTFSRIMRCLMKDGNFSVSLWEEIFLTATYLSNRFPYSTLGGATPYSKMHKKEADMTGLRTIG 675
            +GH+N R++D L +   TGV+Y  ++S   +C + K +Q  HP+ +TR+ S+  +L   D +GP+ P A+     F Y     +D+++MK++++L+ K    +++H YNM V    G RIETIRCDKGGE +G EF   C  + I +EY ATNTPQQ GV +RD QT + + RCL+KDG+F  S+W E+ LTA YL NR  +S LGGATPYSK+H +  D++GLR IG
Sbjct:  390 LGHLNARSLDTLRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENAGSEFRNYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSSHSALGGATPYSKLHNQSPDLSGLRVIG 617
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8400.16011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCM0_9PHAE7.620e-6846.49Integrase catalytic domain-containing protein n=5 ... [more]
A0A6H5KT84_9PHAE7.260e-6646.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K500_9PHAE7.560e-6646.49Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJR8_9PHAE9.820e-6546.49Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KCT3_9PHAE1.250e-6446.49Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1R7_9PHAE1.610e-6446.05Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KVF6_9PHAE2.260e-6445.61Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JYD3_9PHAE1.080e-6350.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSL6_9PHAE1.200e-6346.05Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J8P7_9PHAE8.270e-6345.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8400contigH-elongata_contig8400:8909..9607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score90.1
Seed ortholog evalue7.9e-16
Seed eggNOG ortholog15368.BRADI1G43020.1
KEGG koko:K20093
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size699
Cds size381
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931244.8515453-UTR-H-elongata_contig8400:8908..92261622931244.8515453-UTR-H-elongata_contig8400:8908..9226Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8400 8909..9226 +
1691679757.3760178-UTR-H-elongata_contig8400:8908..92261691679757.3760178-UTR-H-elongata_contig8400:8908..9226Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8400 8909..9226 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931244.8698645-CDS-H-elongata_contig8400:9226..96071622931244.8698645-CDS-H-elongata_contig8400:9226..9607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8400 9227..9607 +
1691679757.385881-CDS-H-elongata_contig8400:9226..96071691679757.385881-CDS-H-elongata_contig8400:9226..9607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8400 9227..9607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8400.16011.1prot_H-elongata_contig8400.16011.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8400 9227..9607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8400.16011.1

>prot_H-elongata_contig8400.16011.1 ID=prot_H-elongata_contig8400.16011.1|Name=mRNA_H-elongata_contig8400.16011.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
MAVVVPLGLRIETIRCDKGGEYSGREFNTRCIKAGINVEYTATNTPQQNG
VFKRDEQTFSRIMRCLMKDGNFSVSLWEEIFLTATYLSNRFPYSTLGGAT
PYSKMHKKEADMTGLRTIGTGHSSII*
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mRNA from alignment at H-elongata_contig8400:8909..9607+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8400.16011.1 ID=mRNA_H-elongata_contig8400.16011.1|Name=mRNA_H-elongata_contig8400.16011.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=699bp|location=Sequence derived from alignment at H-elongata_contig8400:8909..9607+ (Himanthalia elongata Himel1 dioecious)
ATAGGACACATGAATCCCCGAAACATAGACCTATTGTGTCGAAAGGAAAG
AACCGGAGTCAACTACACCGGTACCGTGTCGGACTACGATATCTGCGCTG
TAACAAAGAGCAGGCAACAAGCACACCCCGAGACGACCACGCGCAAGACG
AGCAAGCTGATGGAGCTGTTCTACACGGACTTCATCGGACCTATCACCCC
TGCGGCCGAGCGAGGGTTCAAGTACATCAGCATGTTCCCCAACGACTTCT
CGCGCATGAAGGATATTTTCATACTCAAGAGCAAGATATAAGCTGCCAAA
TCGTTACATCAGTACAACATGGCGGTGGTCGTTCCGCTGGGACTCCGCAT
CGAGACCATCCGATGCGATAAAGGTGGTGAGTACTCTGGAAGAGAGTTCA
ATACTCGATGCATCAAAGCCGGGATCAACGTGGAGTACACTGCAACCAAC
ACGCCGCAGCAAAATGGGGTGTTCAAGAGAGACGAGCAGACATTTTCTCG
TATTATGAGATGTTTGATGAAGGACGGGAACTTTTCTGTCTCCCTGTGGG
AGGAGATATTCTTAACGGCTACGTACCTGTCCAACAGATTTCCCTACTCC
ACTCTGGGAGGAGCTACTCCGTACTCCAAGATGCACAAAAAGGAGGCTGA
CATGACTGGACTACGCACCATCGGGACAGGGCACTCCTCCATCATTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig8400:8909..9607+

>mRNA_H-elongata_contig8400.16011.1 ID=mRNA_H-elongata_contig8400.16011.1|Name=mRNA_H-elongata_contig8400.16011.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig8400:8909..9607+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGTGGTCGTTCCGCTGGGACTCCGCATCGAGACCATCCGATGCGA
TAAAGGTGGTGAGTACTCTGGAAGAGAGTTCAATACTCGATGCATCAAAG
CCGGGATCAACGTGGAGTACACTGCAACCAACACGCCGCAGCAAAATGGG
GTGTTCAAGAGAGACGAGCAGACATTTTCTCGTATTATGAGATGTTTGAT
GAAGGACGGGAACTTTTCTGTCTCCCTGTGGGAGGAGATATTCTTAACGG
CTACGTACCTGTCCAACAGATTTCCCTACTCCACTCTGGGAGGAGCTACT
CCGTACTCCAAGATGCACAAAAAGGAGGCTGACATGACTGGACTACGCAC
CATCGGGACAGGGCACTCCTCCATCATTTGAATGGCGGTGGTCGTTCCGC
TGGGACTCCGCATCGAGACCATCCGATGCGATAAAGGTGGTGAGTACTCT
GGAAGAGAGTTCAATACTCGATGCATCAAAGCCGGGATCAACGTGGAGTA
CACTGCAACCAACACGCCGCAGCAAAATGGGGTGTTCAAGAGAGACGAGC
AGACATTTTCTCGTATTATGAGATGTTTGATGAAGGACGGGAACTTTTCT
GTCTCCCTGTGGGAGGAGATATTCTTAACGGCTACGTACCTGTCCAACAG
ATTTCCCTACTCCACTCTGGGAGGAGCTACTCCGTACTCCAAGATGCACA
AAAAGGAGGCTGACATGACTGGACTACGCACCATCGGGACAGGGCACTCC
TCCATCATTTGA
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