mRNA_H-elongata_contig8398.16010.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8398.16010.1
Unique NamemRNA_H-elongata_contig8398.16010.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig8398.16010.1 vs. uniprot
Match: A0A6H5KS52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS52_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 2.580e-64
Identity = 128/186 (68.82%), Postives = 142/186 (76.34%), Query Frame = 1 
Query:   49 MANDLRRISTLQTELGAFTSLVTLRRPRGRACWNVLREGLSTLEGHLQGDHQSMYSDRSRKGFLPPGSGGGKKXXXXXXXRKSAARTLPRLLHRARRLSELLGVPWASVVRHLANEAASRGMVPEAVGLCNMLFRDKAAMDERAAALALRDTAKALSTFVANQALSGTLRMDGLAGDRAKTAVFQA 606
            MA+DLRR+S LQTE GAFTSL TL RPRGRACWN +REGL TLE +L GD+++     +              XXXXXX RK+ A  LPRLLHRARRLSELLGV W SVV HLANEAA+RG VPEAVGLC+MLFRD+A  DERAAALALRDTAKALSTFVANQA  G LR D L G+RA+TAV QA
Sbjct:    1 MASDLRRVSALQTEFGAFTSLKTLSRPRGRACWNTMREGLVTLEEYLHGDNETRGKKTAAAAXXXXXXXXXXXXXXXXXARKATASALPRLLHRARRLSELLGVAWTSVVSHLANEAATRGKVPEAVGLCHMLFRDQATTDERAAALALRDTAKALSTFVANQAHMGALRADDLEGERARTAVLQA 186
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BLAST of mRNA_H-elongata_contig8398.16010.1 vs. uniprot
Match: D8LSU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU3_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 1.210e-63
Identity = 132/205 (64.39%), Postives = 147/205 (71.71%), Query Frame = 1 
Query:   40 LDTMANDLRRISTLQTELGAFTSLVTLRRPRGRACWNVLREGLSTLEGHLQGDHQSMYSDRSRKGFLPPGSGGGKKXXXXXXX----------------RKSAARTLPRLLHRARRLSELLGVPWASVVRHLANEAASRGMVPEAVGLCNMLFRDKAAMDERAAALALRDTAKALSTFVANQALSGTLRMDGLAGDRAKTAVFQA 606
            L TMA+DLRR+S LQTE GAFTSL TL  PRGRACWN +REGL TLE +L GD+++        G +P     GKK   XXXX                RK+ A  LPRLLHRARRLSELLGV W SVV HLANEAA+RG VP+AVGLC+MLFRD+AA DERAAALALRDTAKALSTFVANQA  G LR D L G+RA+TAV QA
Sbjct: 1410 LATMASDLRRVSALQTEFGAFTSLKTLNNPRGRACWNTMREGLVTLEEYLHGDNKA--------GSVPSAGSKGKKTAAXXXXXXXXXXXXXXXXXXXXRKATASALPRLLHRARRLSELLGVAWTSVVSHLANEAATRGKVPQAVGLCHMLFRDQAATDERAAALALRDTAKALSTFVANQAHMGALRADDLEGERARTAVLQA 1606
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BLAST of mRNA_H-elongata_contig8398.16010.1 vs. uniprot
Match: A0A835ZDW9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDW9_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.760e-11
Identity = 59/154 (38.31%), Postives = 75/154 (48.70%), Query Frame = 1 
Query:   67 RISTLQTELGAFTSLVTLRRPRGRACWNVLREGLSTLEGHLQGDHQSMYSDRSRKGFLPPGSGGGKKXXXXXXXRKSAARTLPRLLHRARRLSELLGVPWASVVRHLANEAASRGMVPEAVGLCNMLFRDKAAMDERAAALALRDTAKALSTFV 528
            R   LQ E G F S+ TL R R    W +LR  L+  E   +G   S                   K         + AR+L   L  ARRL ELLGV W+ +VRHLA+EA   G V EA+ LC+   ++    D+  AALALR+TA ALS +V
Sbjct: 1045 RARALQVEFGLFPSVRTLSR-RADLAWAMLRARLAAAELCWRGSTGSSXXXXXXXXXXXAALPAPAKRWEV-----APARSLGAQLVGARRLGELLGVKWSRIVRHLAHEATLAGRVQEALDLCSGNLKEG---DDSDAALALRETAVALSAYV 1189
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8398.16010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KS52_9PHAE2.580e-6468.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSU3_ECTSI1.210e-6364.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZDW9_9STRA4.760e-1138.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8398contigH-elongata_contig8398:178..1788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size630
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8398.16010.1prot_H-elongata_contig8398.16010.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8398 190..1788 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931244.7268555-UTR-H-elongata_contig8398:177..1891622931244.7268555-UTR-H-elongata_contig8398:177..189Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8398 178..189 +
1691679757.3280802-UTR-H-elongata_contig8398:177..1891691679757.3280802-UTR-H-elongata_contig8398:177..189Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8398 178..189 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931244.7392821-CDS-H-elongata_contig8398:189..3811622931244.7392821-CDS-H-elongata_contig8398:189..381Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8398 190..381 +
1691679757.3392038-CDS-H-elongata_contig8398:189..3811691679757.3392038-CDS-H-elongata_contig8398:189..381Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8398 190..381 +
1622931244.761772-CDS-H-elongata_contig8398:880..10051622931244.761772-CDS-H-elongata_contig8398:880..1005Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8398 881..1005 +
1691679757.3473344-CDS-H-elongata_contig8398:880..10051691679757.3473344-CDS-H-elongata_contig8398:880..1005Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8398 881..1005 +
1622931244.7756073-CDS-H-elongata_contig8398:1201..13931622931244.7756073-CDS-H-elongata_contig8398:1201..1393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8398 1202..1393 +
1691679757.3557963-CDS-H-elongata_contig8398:1201..13931691679757.3557963-CDS-H-elongata_contig8398:1201..1393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8398 1202..1393 +
1622931244.7967815-CDS-H-elongata_contig8398:1679..17881622931244.7967815-CDS-H-elongata_contig8398:1679..1788Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8398 1680..1788 +
1691679757.3665037-CDS-H-elongata_contig8398:1679..17881691679757.3665037-CDS-H-elongata_contig8398:1679..1788Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8398 1680..1788 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8398.16010.1

>prot_H-elongata_contig8398.16010.1 ID=prot_H-elongata_contig8398.16010.1|Name=mRNA_H-elongata_contig8398.16010.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp
MGDSAVSDDLDTMANDLRRISTLQTELGAFTSLVTLRRPRGRACWNVLRE
GLSTLEGHLQGDHQSMYSDRSRKGFLPPGSGGGKKGGVKGNTRKSAARTL
PRLLHRARRLSELLGVPWASVVRHLANEAASRGMVPEAVGLCNMLFRDKA
AMDERAAALALRDTAKALSTFVANQALSGTLRMDGLAGDRAKTAVFQARE
GCLAD*
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mRNA from alignment at H-elongata_contig8398:178..1788+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8398.16010.1 ID=mRNA_H-elongata_contig8398.16010.1|Name=mRNA_H-elongata_contig8398.16010.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1611bp|location=Sequence derived from alignment at H-elongata_contig8398:178..1788+ (Himanthalia elongata Himel1 dioecious)
GGCTCCGGGAAAATGGGGGACAGCGCGGTCAGCGACGACCTTGACACGAT
GGCCAACGACCTGCGGAGAATCTCGACGCTGCAGACAGAGCTTGGGGCGT
TCACCTCCCTGGTGACTCTCCGCCGTCCTCGAGGAAGGGCGTGCTGGAAC
GTCCTCAGGGAGGGACTGTCGACCCTCGAGGGTCACCTCCAAGGCGATCA
CCAGGTGACCGCCGATCGCAGGAGAAAGCGTTCGATCCCCCCCCCCCCTC
CGAATAAAGATCACGGTGTACGGTGCAGATATTTCCTCCTGAATGTTTTT
TATTGCCGAAATTACGTTGGCCTATTAACGATGAGGGATTTATTTCCACG
GTGTCCAGGTTCCCTCTGCCCTTGGGAAAATTCCTTAGGAAAATTCCCCA
ATAAAATTTTACCTGCGAGCGTTTCTCTTTCGCCGTATGCAGCCACAAAA
CGTTTTAGCCAATGAGAGTGACTGAGCTTTCGCTATCACTAGCCCCGGTC
TTCACCCGTAAATATTCGTGGATGCTGATGGCGCGCGGGTGCTGCTTTGC
TTTGTACATCCCAGTATACCACCAAAAGCGCTTCACACGTGGCCAGGACG
CTGCCCGTGTTGCATAGCTCACGCGCCCCTCCTTCTCTCCCTTCACCCCC
CCACCCCACCCCCCGCTCTGCCTACCTCGCCCGTTGCTGCGGTGTAATTG
CAGTCGATGTATTCGGATCGGTCCCGTAAAGGCTTTTTGCCTCCGGGATC
CGGCGGAGGCAAAAAAGGCGGAGTCAAGGGGAACACAAGAAAATCCGCCG
CGCGCACGCTCCCGCGATTGCTCCACAGGTGGGATGCGCCTCGTCCTCAC
GTCTGATGTACTTGGTCACGTTTCGCTGGAGTAGGTGCTGTTGAGAGAGA
AAAAGCGCCAATACGACAGATGGTCATATCCGGAGAAGGCCCCGTATTTC
CATCCGTCCAATGGCACGTCTGTCTGTCCAACAGTCTATCTCCTCAATCA
TTTGTGGGTCGCGTGTTTGCGCAGGGCTCGTCGTCTCTCGGAGCTGCTCG
GGGTCCCGTGGGCGAGCGTGGTGAGGCACCTGGCCAACGAGGCGGCGAGC
AGGGGCATGGTTCCCGAGGCGGTGGGGCTGTGCAACATGTTGTTCCGAGA
CAAGGCGGCGATGGACGAGCGTGCCGCCGCCTTGGCCTTAAGGGATACCG
CCAAGGCGTTGTCCACGTGAGTCCCCCGTGTCCGCAAAGGAAAATATGGG
AGAAGACTACCACGCCTTTTGTTTGTCTGGTCTCGATGTTTGGGGTGGCT
GAGGCTATTTCAAAGGGCGCGGGCGAGAGTGGGGGTGAATTGCTCCCGAT
CCCTTTGAGAGCGGTCCAATTCGAAAAATATCCCTTGGTTGCGCATTGTT
TTGCGTGTATGTGTGTGTTTGTGTGTGTGTAAGAGAGAAATATTCGGGTT
CTCCTTGTGCGTGCCTGCCATCCGCCCCTGGCGATCCCCGTGCCTCTTAC
AGATTTGTGGCCAACCAGGCGCTCTCGGGTACTCTTCGAATGGATGGCCT
CGCCGGGGATAGAGCGAAAACGGCGGTATTCCAGGCGAGAGAGGGATGCC
TAGCCGATTAG
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Coding sequence (CDS) from alignment at H-elongata_contig8398:178..1788+

>mRNA_H-elongata_contig8398.16010.1 ID=mRNA_H-elongata_contig8398.16010.1|Name=mRNA_H-elongata_contig8398.16010.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1236bp|location=Sequence derived from alignment at H-elongata_contig8398:178..1788+ (Himanthalia elongata Himel1 dioecious)
ATGGGGGACAGCGCGGTCAGCGACGACCTTGACACGATGGCCAACGACCT
GCGGAGAATCTCGACGCTGCAGACAGAGCTTGGGGCGTTCACCTCCCTGG
TGACTCTCCGCCGTCCTCGAGGAAGGGCGTGCTGGAACGTCCTCAGGGAG
GGACTGTCGACCCTCGAGGGTCACCTCCAAGGCGATCACCAGATGGGGGA
CAGCGCGGTCAGCGACGACCTTGACACGATGGCCAACGACCTGCGGAGAA
TCTCGACGCTGCAGACAGAGCTTGGGGCGTTCACCTCCCTGGTGACTCTC
CGCCGTCCTCGAGGAAGGGCGTGCTGGAACGTCCTCAGGGAGGGACTGTC
GACCCTCGAGGGTCACCTCCAAGGCGATCACCAGTCGATGTATTCGGATC
GGTCCCGTAAAGGCTTTTTGCCTCCGGGATCCGGCGGAGGCAAAAAAGGC
GGAGTCAAGGGGAACACAAGAAAATCCGCCGCGCGCACGCTCCCGCGATT
GCTCCACAGTCGATGTATTCGGATCGGTCCCGTAAAGGCTTTTTGCCTCC
GGGATCCGGCGGAGGCAAAAAAGGCGGAGTCAAGGGGAACACAAGAAAAT
CCGCCGCGCGCACGCTCCCGCGATTGCTCCACAGGGCTCGTCGTCTCTCG
GAGCTGCTCGGGGTCCCGTGGGCGAGCGTGGTGAGGCACCTGGCCAACGA
GGCGGCGAGCAGGGGCATGGTTCCCGAGGCGGTGGGGCTGTGCAACATGT
TGTTCCGAGACAAGGCGGCGATGGACGAGCGTGCCGCCGCCTTGGCCTTA
AGGGATACCGCCAAGGCGTTGTCCACGGCTCGTCGTCTCTCGGAGCTGCT
CGGGGTCCCGTGGGCGAGCGTGGTGAGGCACCTGGCCAACGAGGCGGCGA
GCAGGGGCATGGTTCCCGAGGCGGTGGGGCTGTGCAACATGTTGTTCCGA
GACAAGGCGGCGATGGACGAGCGTGCCGCCGCCTTGGCCTTAAGGGATAC
CGCCAAGGCGTTGTCCACATTTGTGGCCAACCAGGCGCTCTCGGGTACTC
TTCGAATGGATGGCCTCGCCGGGGATAGAGCGAAAACGGCGGTATTCCAG
GCGAGAGAGGGATGCCTAGCCGATTAGATTTGTGGCCAACCAGGCGCTCT
CGGGTACTCTTCGAATGGATGGCCTCGCCGGGGATAGAGCGAAAACGGCG
GTATTCCAGGCGAGAGAGGGATGCCTAGCCGATTAG
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