mRNA_H-elongata_contig83964.16009.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83964.16009.1
Unique NamemRNA_H-elongata_contig83964.16009.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig83964.16009.1 vs. uniprot
Match: A0A6H5J638_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J638_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.670e-32
Identity = 70/80 (87.50%), Postives = 78/80 (97.50%), Query Frame = 1 
Query:    1 RGVRFRKEEQLLRAEEEAKRRMESADARRREHRRGIVRKANDANSKVKEVVFMNKLTVEDVKITLQMQLAEVERRIQLGR 240
            RGVRFRKEEQLL+AEEEAKR+ME ADARR+EHRRGIVRKANDANSKV+EV+FMNKLTVED+KITLQM+LAEV+RRIQ GR
Sbjct:  107 RGVRFRKEEQLLKAEEEAKRKMEGADARRKEHRRGIVRKANDANSKVEEVLFMNKLTVEDLKITLQMKLAEVDRRIQSGR 186
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BLAST of mRNA_H-elongata_contig83964.16009.1 vs. uniprot
Match: D7G5K8_ECTSI (Scaper protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K8_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 1.680e-32
Identity = 70/80 (87.50%), Postives = 78/80 (97.50%), Query Frame = 1 
Query:    1 RGVRFRKEEQLLRAEEEAKRRMESADARRREHRRGIVRKANDANSKVKEVVFMNKLTVEDVKITLQMQLAEVERRIQLGR 240
            RGVRFRKEEQLL+AEEEAKR+ME ADARR+EHRRGIVRKANDANSKV+EV+FMNKLTVED+KITLQM+LAEV+RRIQ GR
Sbjct: 1210 RGVRFRKEEQLLKAEEEAKRKMEGADARRKEHRRGIVRKANDANSKVEEVLFMNKLTVEDLKITLQMKLAEVDRRIQSGR 1289
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83964.16009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J638_9PHAE1.670e-3287.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5K8_ECTSI1.680e-3287.50Scaper protein n=1 Tax=Ectocarpus siliculosus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83964contigH-elongata_contig83964:1307..2665 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.6
Seed ortholog evalue3.3e-28
Seed eggNOG ortholog2880.D7G5K8
Preferred nameSCAPER
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0015630,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464
EggNOG OGsKOG4722@1,KOG4722@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931244.6096668-CDS-H-elongata_contig83964:1306..14081622931244.6096668-CDS-H-elongata_contig83964:1306..1408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83964 1307..1408 -
1691679757.3066885-CDS-H-elongata_contig83964:1306..14081691679757.3066885-CDS-H-elongata_contig83964:1306..1408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83964 1307..1408 -
1622931244.6319258-CDS-H-elongata_contig83964:2527..26651622931244.6319258-CDS-H-elongata_contig83964:2527..2665Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83964 2528..2665 -
1691679757.3180726-CDS-H-elongata_contig83964:2527..26651691679757.3180726-CDS-H-elongata_contig83964:2527..2665Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83964 2528..2665 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83964.16009.1prot_H-elongata_contig83964.16009.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83964 1307..2665 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83964.16009.1

>prot_H-elongata_contig83964.16009.1 ID=prot_H-elongata_contig83964.16009.1|Name=mRNA_H-elongata_contig83964.16009.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
RGVRFRKEEQLLRAEEEAKRRMESADARRREHRRGIVRKANDANSKVKEV
VFMNKLTVEDVKITLQMQLAEVERRIQLGR
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mRNA from alignment at H-elongata_contig83964:1307..2665-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83964.16009.1 ID=mRNA_H-elongata_contig83964.16009.1|Name=mRNA_H-elongata_contig83964.16009.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1359bp|location=Sequence derived from alignment at H-elongata_contig83964:1307..2665- (Himanthalia elongata Himel1 dioecious)
AGGGGGGTTCGCTTCCGAAAGGAGGAGCAGTTGTTGAGGGCAGAAGAGGA
AGCCAAGAGGAGGATGGAAAGCGCCGACGCTCGTCGCCGAGAACACCGCC
GTGGCATCGTTCGGAAGGCCAACGACGCTAACTCGAAGGTGCGGGAGTTC
GTAGGCTATTCTGTGGCGTTGTGGCGCGGGGCGCGTGATCAGGGGGCTTA
CCGCGATACGGTAGACAGGCCCCGCCGCCCACGACGCGACCGATTTACTG
GAGGGTTCGACGTATCGTCGTTGTAGAGCGGTAGCGGGTGAAGCCATCGT
CGTGCTGTTTGTCTTTTTGTGTCTTGCGTGTTTTGTGTTTGTTGGGTTGG
GTTGCCACAGCTTTCTTGCAAATTAGTTATTAAATTATTACTGTGCTACA
ACATTTTTTGCGGTTATCATGAAAATAATTATCCATATCCGGTTAAAATG
TGTAACTGTTTCGATAAATAGATAACAGTCCAGGACGTACAGAGTATTAA
GGTATATATATATGTTGTATATGTATATGTATATGTATAGATACAGTAGT
TTTATAGAGAAGTAGCATGCACTGCTTTGTGTGCACACCGTGTACCTGAT
AGCTTGATTCAAACGTTAATGATCCATCGCATGGAGTCGCACCGCACTAT
GCCATACTTTGTGCAGTACATTATAATTTAGCGCGATGATTGCTTCGTAG
AATGATTTTGCCGTGGTTGGTTTTATTCAGTCTGCGCGGGTTGTTTTTTC
AAACACGAAAAGTTTTTCTATTATTGATCATGCATTATTAGGGCTTGGCA
TATTTTCAATAAAATTATCAACACAAGCACAACAACGCTTGTGGTTTTCA
TTCTCGTCGCCCAACCGTTCCAACCATACTATAGCTGGTATACTAAACCA
CGTCGGAAAAACACTCTCTTTTAGAGTAATATTTTTAGTCTGGAAGCCAT
AAGGTCGATTCTACGAAGTTTTGTTATGATTTTGATCTGGTTTTTGTAAT
ATCAATAGTAGGTAAGCACAGTTTGACATTATGAGCGAGATGTTTTTTCA
TTTATAAAAATCTTAACTCGATTGAAATTTGCCAGAGGTTGACGACCGGT
GGGGACTGCGCTGACTAAATATGCATATAGCCCTATAACCCTATAACCTT
TAGGGTAAGGTAGGTTGGTAGATCGGTAAAACTCCATCGGCGGCTATAAA
AAGCGCTACAACTCCAATTAATTATGATGTGATCATCTGCGCGATTTTCA
CGCTCAGGTGAAAGAAGTGGTGTTTATGAACAAGCTCACTGTGGAAGACG
TGAAGATCACCCTGCAGATGCAGTTGGCCGAGGTCGAGCGCAGGATCCAG
CTGGGAAGG
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Coding sequence (CDS) from alignment at H-elongata_contig83964:1307..2665-

>mRNA_H-elongata_contig83964.16009.1 ID=mRNA_H-elongata_contig83964.16009.1|Name=mRNA_H-elongata_contig83964.16009.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig83964:1307..2665- (Himanthalia elongata Himel1 dioecious)
AGGGGGGTTCGCTTCCGAAAGGAGGAGCAGTTGTTGAGGGCAGAAGAGGA
AGCCAAGAGGAGGATGGAAAGCGCCGACGCTCGTCGCCGAGAACACCGCC
GTGGCATCGTTCGGAAGGCCAACGACGCTAACTCGAAGAGGGGGGTTCGC
TTCCGAAAGGAGGAGCAGTTGTTGAGGGCAGAAGAGGAAGCCAAGAGGAG
GATGGAAAGCGCCGACGCTCGTCGCCGAGAACACCGCCGTGGCATCGTTC
GGAAGGCCAACGACGCTAACTCGAAGGTGAAAGAAGTGGTGTTTATGAAC
AAGCTCACTGTGGAAGACGTGAAGATCACCCTGCAGATGCAGTTGGCCGA
GGTCGAGCGCAGGATCCAGCTGGGAAGGGTGAAAGAAGTGGTGTTTATGA
ACAAGCTCACTGTGGAAGACGTGAAGATCACCCTGCAGATGCAGTTGGCC
GAGGTCGAGCGCAGGATCCAGCTGGGAAGG
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