mRNA_H-elongata_contig83918.16004.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83918.16004.1
Unique NamemRNA_H-elongata_contig83918.16004.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig83918.16004.1 vs. uniprot
Match: A0A1A8SIR0_9TELE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothobranchius rachovii TaxID=451742 RepID=A0A1A8SIR0_9TELE)

HSP 1 Score: 65.9 bits (159), Expect = 1.480e-12
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 1
Query:    1 DGNPLAWWDEQQATLPLLRELATRFLCVPASSVSSERLFSKTGRTLTKKRSKLKGPRMAHLVIVR 195
            D +PL WW E + T P L +LA R+L V ASSV +ER+FSK G  L+K+RS+LKG  +  L+ ++
Sbjct:   28 DKDPLLWWQEHEQTFPALSKLAVRYLGVVASSVPAERIFSKAGEVLSKRRSRLKGKTVNMLLFLK 92          
BLAST of mRNA_H-elongata_contig83918.16004.1 vs. uniprot
Match: UPI001E1CD40C (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1CD40C)

HSP 1 Score: 66.6 bits (161), Expect = 1.330e-11
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 1
Query:    1 DGNPLAWWDEQQATLPLLRELATRFLCVPASSVSSERLFSKTGRTLTKKRSKLKGPRMA 177
            DG+PLAWW E     P L +LA RFLC  ASSV SERLFSK G  ++ +RS +K   +A
Sbjct:  190 DGDPLAWWKEHDMYFPKLSDLAKRFLCTSASSVPSERLFSKAGELISHRRSNIKDTNLA 248          
BLAST of mRNA_H-elongata_contig83918.16004.1 vs. uniprot
Match: Q8T648_BACDO (Transposase n=1 Tax=Bactrocera dorsalis TaxID=27457 RepID=Q8T648_BACDO)

HSP 1 Score: 66.6 bits (161), Expect = 2.790e-11
Identity = 28/62 (45.16%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    7 NPLAWWDEQQATLPLLRELATRFLCVPASSVSSERLFSKTGRTLTKKRSKLKGPRMAHLVIV 192
            NPL +WD ++AT P L EL+ ++LC+PA+SV SER+FSK G+ +  +R++LKG ++  ++ +
Sbjct:  584 NPLNYWDSKKATFPELYELSNKYLCIPATSVPSERVFSKAGQIINDRRNRLKGEKLDQIMFL 645          
BLAST of mRNA_H-elongata_contig83918.16004.1 vs. uniprot
Match: UPI001C48FBA3 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Homarus americanus TaxID=6706 RepID=UPI001C48FBA3)

HSP 1 Score: 62.4 bits (150), Expect = 5.930e-11
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 1
Query:    1 DGNPLAWWDEQQATLPLLRELATRFLCVPASSVSSERLFSKTGRTLTKKRSKLK 162
            +G+PL WW++  A  P L+E A  FLC P SSV SERLFSK G  ++K+RS LK
Sbjct:   50 EGDPLDWWEKPAALFPKLQEQAKMFLCSPTSSVPSERLFSKAGELVSKRRSCLK 103          
BLAST of mRNA_H-elongata_contig83918.16004.1 vs. uniprot
Match: UPI001E1D12E4 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1D12E4)

HSP 1 Score: 65.5 bits (158), Expect = 6.630e-11
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 1
Query:    1 DGNPLAWWDEQQATLPLLRELATRFLCVPASSVSSERLFSKTGRTLTKKRSKLK 162
            DG+PLAWW E     P L +LA RFLC  ASSV SERLFSK G  ++ +RS +K
Sbjct:  321 DGDPLAWWKEHDMYFPKLSDLAKRFLCTSASSVPSERLFSKAGELISHRRSNIK 374          
BLAST of mRNA_H-elongata_contig83918.16004.1 vs. uniprot
Match: UPI001E1D0815 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1D0815)

HSP 1 Score: 65.5 bits (158), Expect = 7.070e-11
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 1
Query:    1 DGNPLAWWDEQQATLPLLRELATRFLCVPASSVSSERLFSKTGRTLTKKRSKLK 162
            DG+PLAWW E     P L +LA RFLC  ASSV SERLFSK G  ++ +RS +K
Sbjct:  437 DGDPLAWWKEHDMYFPKLSDLAKRFLCTSASSVPSERLFSKAGELISHRRSNIK 490          
BLAST of mRNA_H-elongata_contig83918.16004.1 vs. uniprot
Match: A0A8J9UI59_BRAAE (Hypothetical protein n=1 Tax=Brassicogethes aeneus TaxID=1431903 RepID=A0A8J9UI59_BRAAE)

HSP 1 Score: 65.5 bits (158), Expect = 7.080e-11
Identity = 30/62 (48.39%), Postives = 45/62 (72.58%), Query Frame = 1
Query:    7 NPLAWWDEQQATLPLLRELATRFLCVPASSVSSERLFSKTGRTLTKKRSKLKGPRMAHLVIV 192
            NPL WW E+++  P L +LA + LCV A+SV SER+FSK G+T+T +R++L G ++  LV +
Sbjct:  442 NPLKWWQERKSIYPRLYQLAVKKLCVVATSVPSERIFSKAGQTVTDRRNRLSGEKVRQLVFL 503          
BLAST of mRNA_H-elongata_contig83918.16004.1 vs. uniprot
Match: A0A1A8GQ59_9TELE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothobranchius korthausae TaxID=1143690 RepID=A0A1A8GQ59_9TELE)

HSP 1 Score: 63.5 bits (153), Expect = 9.620e-11
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    7 NPLAWWDEQQATLPLLRELATRFLCVPASSVSSERLFSKTGRTLTKKRSKLKGPRMAHLVIVR 195
            NPL WW EQQ  LPLL  LA R+LC+PA+SV+SER+F   G  ++ KRS LK   +  L+ ++
Sbjct:  122 NPLQWWKEQQ-DLPLLSSLAKRYLCIPATSVASERVFGTAGDIISTKRSLLKHEHVDQLIFLK 183          
BLAST of mRNA_H-elongata_contig83918.16004.1 vs. uniprot
Match: A0A8C6PX52_NOTFU (BED-type domain-containing protein n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6PX52_NOTFU)

HSP 1 Score: 65.1 bits (157), Expect = 9.700e-11
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 1
Query:    1 DGNPLAWWDEQQATLPLLRELATRFLCVPASSVSSERLFSKTGRTLTKKRSKLKGPRMA 177
            D +PL WW E   T P L +LA R+L + ASSV +ER+FSK G  L KKRS+LKG  +A
Sbjct:  470 DKDPLLWWQEHGQTFPALSKLAVRYLGIVASSVPAERIFSKAGEVLRKKRSRLKGKTLA 528          
BLAST of mRNA_H-elongata_contig83918.16004.1 vs. uniprot
Match: A0A3Q4G0N9_NEOBR (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Neolamprologus brichardi TaxID=32507 RepID=A0A3Q4G0N9_NEOBR)

HSP 1 Score: 64.7 bits (156), Expect = 9.740e-11
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    1 DGNPLAWWDEQQATLPLLRELATRFLCVPASSVSSERLFSKTGRTLTKKRSKLKG 165
            D +PL WW E + T P L  LA R+L + ASSV +ER+FSK G  ++KKRS+LKG
Sbjct:  224 DQDPLVWWQEHEQTFPSLSRLAVRYLGIVASSVPAERIFSKAGEVVSKKRSRLKG 278          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83918.16004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1A8SIR0_9TELE1.480e-1249.23Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
UPI001E1CD40C1.330e-1154.24E3 SUMO-protein ligase ZBED1-like n=1 Tax=Portunus... [more]
Q8T648_BACDO2.790e-1145.16Transposase n=1 Tax=Bactrocera dorsalis TaxID=2745... [more]
UPI001C48FBA35.930e-1155.56E3 SUMO-protein ligase ZBED1-like n=1 Tax=Homarus ... [more]
UPI001E1D12E46.630e-1157.41E3 SUMO-protein ligase ZBED1-like n=1 Tax=Portunus... [more]
UPI001E1D08157.070e-1157.41E3 SUMO-protein ligase ZBED1-like n=1 Tax=Portunus... [more]
A0A8J9UI59_BRAAE7.080e-1148.39Hypothetical protein n=1 Tax=Brassicogethes aeneus... [more]
A0A1A8GQ59_9TELE9.620e-1150.79Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A8C6PX52_NOTFU9.700e-1154.24BED-type domain-containing protein n=1 Tax=Nothobr... [more]
A0A3Q4G0N9_NEOBR9.740e-1154.55Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ne... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83918contigH-elongata_contig83918:1911..2105 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score64.3
Seed ortholog evalue2.4e-08
Seed eggNOG ortholog400682.PAC_15703692
EggNOG free text desc.hAT family C-terminal dimerisation region
EggNOG OGs3AASQ@33154,3BV23@33208,KOG1121@1,KOG1121@2759
COG Functional cat.S
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931244.0821803-CDS-H-elongata_contig83918:1910..21051622931244.0821803-CDS-H-elongata_contig83918:1910..2105Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83918 1911..2105 -
1691679757.0701814-CDS-H-elongata_contig83918:1910..21051691679757.0701814-CDS-H-elongata_contig83918:1910..2105Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83918 1911..2105 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83918.16004.1prot_H-elongata_contig83918.16004.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83918 1911..2105 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83918.16004.1

>prot_H-elongata_contig83918.16004.1 ID=prot_H-elongata_contig83918.16004.1|Name=mRNA_H-elongata_contig83918.16004.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
DGNPLAWWDEQQATLPLLRELATRFLCVPASSVSSERLFSKTGRTLTKKR
SKLKGPRMAHLVIVR
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mRNA from alignment at H-elongata_contig83918:1911..2105-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83918.16004.1 ID=mRNA_H-elongata_contig83918.16004.1|Name=mRNA_H-elongata_contig83918.16004.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig83918:1911..2105- (Himanthalia elongata Himel1 dioecious)
GACGGCAACCCGTTGGCGTGGTGGGATGAACAACAAGCGACTCTTCCACT TCTCCGGGAACTCGCTACGCGTTTTCTGTGCGTTCCGGCTTCGTCGGTGT CGTCAGAGCGTCTGTTCTCCAAGACAGGGCGTACTTTGACGAAGAAACGC TCTAAGCTCAAGGGACCGAGGATGGCTCACCTGGTTATCGTGCGT
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Coding sequence (CDS) from alignment at H-elongata_contig83918:1911..2105-

>mRNA_H-elongata_contig83918.16004.1 ID=mRNA_H-elongata_contig83918.16004.1|Name=mRNA_H-elongata_contig83918.16004.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig83918:1911..2105- (Himanthalia elongata Himel1 dioecious)
GACGGCAACCCGTTGGCGTGGTGGGATGAACAACAAGCGACTCTTCCACT
TCTCCGGGAACTCGCTACGCGTTTTCTGTGCGTTCCGGCTTCGTCGGTGT
CGTCAGAGCGTCTGTTCTCCAAGACAGGGCGTACTTTGACGAAGAAACGC
TCTAAGCTCAAGGGACCGAGGATGGCTCACCTGGTTATCGTGCGTGACGG
CAACCCGTTGGCGTGGTGGGATGAACAACAAGCGACTCTTCCACTTCTCC
GGGAACTCGCTACGCGTTTTCTGTGCGTTCCGGCTTCGTCGGTGTCGTCA
GAGCGTCTGTTCTCCAAGACAGGGCGTACTTTGACGAAGAAACGCTCTAA
GCTCAAGGGACCGAGGATGGCTCACCTGGTTATCGTGCGT
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