mRNA_H-elongata_contig83894.16001.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig83894.16001.1
Unique NamemRNA_H-elongata_contig83894.16001.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig83894.16001.1 vs. uniprot
Match: D7FJJ6_ECTSI (Solute carrier family 35 member 3A, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJJ6_ECTSI)

HSP 1 Score: 328 bits (841), Expect = 4.990e-105
Identity = 176/273 (64.47%), Postives = 210/273 (76.92%), Query Frame = 2
Query:  791 ESGGSRAFFKKLKLEVARKPREVAKLTVPALLYTLQNNLLFIALQHLDPATYSVCYQTKILTTALFSVLLLGKRLSFVKWSSLVLLMVGVALAELPKETTKQEIVEPEEVFKQFPMLGFWCVMAAACTSGFAGVYFEMLLKGSKTSLWVRNIQMGLPSVVLAIAGVFLKDWKHVTSNGFFHGYSGVVLGVVVLQAGGGLVVAVVVKYTDNIRKSFAAAVSIIISCIMSMFLFDFQPTLTFIIGAGCVCTSVFMYSRPPPSRGLPTFHKAPHAT 1609
            ESG  R F KKL++EVA KPRE+AKL +PA+LYTLQNN+L++AL++LD ATYSVCYQTKILTTALFSV+LL ++LS  KW +LVLL VGVALA+L  ++T     + E    Q P++GF CVM AACTSGFAGVYFEMLLKGSKTSLW+RNIQMG+PS+VLA   V +KDW+ VTSNGFF GY  VV  V+VLQA GGLVVAVVVKY DNIRKSFA A+SIIISC +S   F F+PT  F IG+  V  SVF+Y++      LP F+K    T
Sbjct:   62 ESGELRTFSKKLRVEVAGKPREMAKLMIPAMLYTLQNNMLYMALENLDAATYSVCYQTKILTTALFSVILLRRKLSATKWGALVLLAVGVALAQLSSQSTNSPKAD-ESSRGQSPVVGFLCVMGAACTSGFAGVYFEMLLKGSKTSLWIRNIQMGIPSIVLAFGSVIVKDWRAVTSNGFFFGYGWVVAAVIVLQAVGGLVVAVVVKYADNIRKSFATAISIIISCALSTLFFAFKPTFLFFIGSAMVVGSVFLYTKQDRPARLPLFNKGRSVT 333          
BLAST of mRNA_H-elongata_contig83894.16001.1 vs. uniprot
Match: A0A836C750_9STRA (Nucleotide-sugar transporter-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C750_9STRA)

HSP 1 Score: 278 bits (710), Expect = 9.480e-85
Identity = 154/298 (51.68%), Postives = 199/298 (66.78%), Query Frame = 2
Query:  794 SGGSRAFFKKLKLEVARKPREVAKLTVPALLYTLQNNLLFIALQHLDPATYSVCYQTKILTTALFSVLLLGKRLSFVKWSSLVLLMVGVALAEL-----PKETTKQEIVEP-------------------------------------EEVFKQFPMLGFWCVMAAACTSGFAGVYFEMLLKGSKTSLWVRNIQMGLPSVVLAIAGVFLKDWKHVTSNGFFHGYSGVVLGVVVLQAGGGLVVAVVVKYTDNIRKSFAAAVSIIISCIMSMFLFDFQPTLTFIIGAGCVCTSVFMYSRP 1561
            SGG + F + +K+E+  KP E+ KL +P+ LY +QNNLL+ AL +LDPATYSVCYQ KI+TTALFSV+LL KRLS +KW +LVLL +GVALAEL     PK        EP                                     EE+  Q  +LGF CV+AA CTSGFAGV+FEM+LKG+KTSLW+RN+QMGLPS++ A+A  + KD   +   GFF+GY+G+V GV+VLQA GGL+VAVVVKY DNI K+FA+AVSI+ SC++S  LF F+P+  F++G   V  SVF+YS+P
Sbjct:   61 SGGYKPFLRTMKIEIVNKPAELGKLALPSFLYMVQNNLLYEALSNLDPATYSVCYQLKIMTTALFSVILLKKRLSPLKWMALVLLTLGVALAELATHAAPKAADADAPPEPMLPLPTAAPDLDSGSAIGNPLQRRLQEDGEAAALGGFEELKMQRQLLGFLCVLAATCTSGFAGVWFEMILKGAKTSLWIRNVQMGLPSILFALASCYTKDLALLRDRGFFYGYTGIVWGVIVLQAVGGLMVAVVVKYADNILKAFASAVSIVTSCLLSALLFGFRPSPVFMVGTLLVSVSVFLYSKP 358          
BLAST of mRNA_H-elongata_contig83894.16001.1 vs. uniprot
Match: A0A7S2U9J9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U9J9_9STRA)

HSP 1 Score: 258 bits (658), Expect = 4.470e-77
Identity = 144/262 (54.96%), Postives = 180/262 (68.70%), Query Frame = 2
Query:  791 ESGGS-RAFFKKLKLEVARKPREVAKLTVPALLYTLQNNLLFIALQHLDPATYSVCYQTKILTTALFSVLLLGKRLSFVKWSSLVLLMVGVALAELPKETTKQEIVEPEEVFKQFPMLGFWCVMAAACTSGFAGVYFEMLLKGSKTSLWVRNIQMGLPSVVLAIAGVFLKDWKHVTSNGFFHGYSGVVLGVVVLQAGGGLVVAVVVKYTDNIRKSFAAAVSIIISCIMSMFLFDFQPTLTFIIGAGCVCTSVFMYSRPPPSR 1573
            +SG S  A + +L   V   P EV KL VP+LLYT+QNNLL++AL +LD ATY VCYQ KILTTALFS  LL +  S +KW SLV+L +GVA+ +L     K   V  E+   +  M+G   V+ AACTSGFAGVYFE +LKGS T+LW+RNIQMGLPSV++A  GV++KD   +   GFF GY+ +V  VV +QA GGL+VAVVVKY DN+ K FA + SIIISCI+S  +FDF+P   F+ GA  V  S  MYSRP   R
Sbjct:  100 QSGSSPSALYDELYEHVWNSPFEVLKLCVPSLLYTVQNNLLYLALTNLDAATYQVCYQLKILTTALFSATLLQRSFSRLKWMSLVILTIGVAIVQLSGSGDKHHHVASEDEASRNRMVGLVAVLCAACTSGFAGVYFERILKGSSTTLWLRNIQMGLPSVIIAYIGVYMKDSMIIAEKGFFVGYTPLVWTVVTVQAVGGLIVAVVVKYADNVLKVFATSFSIIISCIISAVVFDFRPNFLFVCGASLVMASTVMYSRPDTRR 361          
BLAST of mRNA_H-elongata_contig83894.16001.1 vs. uniprot
Match: A0A7S2VC43_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VC43_9STRA)

HSP 1 Score: 249 bits (637), Expect = 1.360e-74
Identity = 139/274 (50.73%), Postives = 180/274 (65.69%), Query Frame = 2
Query:  809 AFFKKLKLEVARKPREVAKLTVPALLYTLQNNLLFIALQHLDPATYSVCYQTKILTTALFSVLLLGKRLSFVKWSSLVLLMVGVALAELP----KETTKQEIVEPEEVFKQFP--------------MLGFWCVMAAACTSGFAGVYFEMLLKGSKTSLWVRNIQMGLPSVVLAIAGVFLKDWKHVTSNGFFHGYSGVVLGVVVLQAGGGLVVAVVVKYTDNIRKSFAAAVSIIISCIMSMFLFDFQPTLTFIIGAGCVCTSVFMYSRPPPSRG 1576
            A F++L L V + P E+AKLT+P+LLYT+QNNLL++AL +LD ATY VCYQ KILTTALFS LLL ++ S  KW SL++L VGVA+ ++     + TT                             ++G   V+ AACTSGF+GVYFE +LKGS+TSLW+RNIQMGLPS+++A   V++KD   V + GF  GYS +V  VV +QA GGL+VA VVKY DN+ K FA + SI++SCI+S FLFDF PT  F+ GA  V T+  MYS P    G
Sbjct:   34 ALFRELYLHVVQSPMEIAKLTIPSLLYTIQNNLLYLALTNLDAATYQVCYQLKILTTALFSALLLQRKFSGQKWMSLIVLTVGVAIVQISGSGDQHTTNAHXXXXXXXXXXXXXXXXXXXXXXXXNRVIGLIAVLCAACTSGFSGVYFEKILKGSRTSLWIRNIQMGLPSILIAYITVYVKDAPAVQTQGFLGGYSSLVWTVVTVQAVGGLIVATVVKYADNVLKVFATSFSIVVSCIISAFLFDFHPTWMFLCGASLVVTATVMYSSPESDGG 307          
BLAST of mRNA_H-elongata_contig83894.16001.1 vs. uniprot
Match: A0A0L0FIU7_9EUKA (UDP-N-acetylglucosamine transporter (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FIU7_9EUKA)

HSP 1 Score: 243 bits (619), Expect = 4.770e-72
Identity = 130/256 (50.78%), Postives = 178/256 (69.53%), Query Frame = 2
Query:  824 LKLEVARKPREVAKLTVPALLYTLQNNLLFIALQHLDPATYSVCYQTKILTTALFSVLLLGKRLSFVKWSSLVLLMVGVALAELPKETTKQEIVEPEEVFKQFPMLGFWCVMAAACTSGFAGVYFEMLLKGSKTSLWVRNIQMGLPSVVLAIAGVFLKDWKHVTSNGFFHGYSGVVLGVVVLQAGGGLVVAVVVKYTDNIRKSFAAAVSIIISCIMSMFLFDFQPTLTFIIGAGCVCTSVFMYSRPPPSRG--LPT 1585
            LK ++     +  KL+VPA++YTLQ NLL++A+ +LD ATY V YQ KILTTA+FSV +LGK L+  KW SL +LM GVAL ++P   TK+E++   +      MLG + V+AA C+SGFAGVYFE +LKG+  S+W+RN+Q+G    ++ +  V + D+  V  NGFF+GY+ +V  V+ LQA GGL++AVVVKY DNI K FA +VSII++ I+S+  FDFQPT  F++GA  V  +V MYSRP P     LPT
Sbjct:   73 LKEQIFDNLADTMKLSVPAIMYTLQGNLLYVAISNLDAATYQVTYQLKILTTAIFSVWMLGKHLTNFKWLSLFILMSGVALVQIPTGDTKKEVIVGNQ------MLGLFAVLAACCSSGFAGVYFEKILKGTSASIWIRNVQLGSFGFIIGMVVVAINDYSAVVQNGFFYGYTPLVWLVITLQAAGGLIIAVVVKYADNILKGFATSVSIILASIISVIFFDFQPTTLFLLGASMVIGAVGMYSRPDPPAAPVLPT 322          
BLAST of mRNA_H-elongata_contig83894.16001.1 vs. uniprot
Match: A0A7S3L616_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L616_9STRA)

HSP 1 Score: 243 bits (620), Expect = 4.650e-71
Identity = 134/257 (52.14%), Postives = 175/257 (68.09%), Query Frame = 2
Query:  809 AFFKKLKLEVARKPREVAKLTVPALLYTLQNNLLFIALQHLDPATYSVCYQTKILTTALFSVLLLGKRLSFVKWSSLVLLMVGVALAELP------KETTKQEIVEPEEVFKQFPMLGFWCVMAAACTSGFAGVYFEMLLKGSKTSLWVRNIQMGLPSVVLAIAGVFLKDWKHVTSNGFFHGYSGVVLGVVVLQAGGGLVVAVVVKYTDNIRKSFAAAVSIIISCIMSMFLFDFQPTLTFIIGAGCVCTSVFMYSRP 1561
            A  ++L   V + P E+ KLTVP+LLYT+QNNLL++AL +LD ATY VCYQ KILTTALFS ++L ++ S  KW +LV+L VGVA+ ++        +          +   Q  ++G   V+ AACTSGF+GVYFE +LKGS+TSLW+RNIQMGLPSVV+A   V +KD   V   GFF GY+ +V  VV +QA GGL+VA VVKY DN+ K FA + SI++SCI+S FLFDF P+  F+ GA  V T+  MYS P
Sbjct:  139 ALHQELHQHVIQSPMEILKLTVPSLLYTVQNNLLYLALTNLDAATYQVCYQLKILTTALFSAVMLQRKFSGQKWFALVVLTVGVAVVQVSGSGDQHSDXXXXXXXPSNQEAPQNRVVGLVAVLCAACTSGFSGVYFEKILKGSRTSLWIRNIQMGLPSVVIAYIAVCVKDAAAVRQQGFFGGYNNIVWTVVAVQAIGGLIVATVVKYADNVLKVFATSFSIVLSCIISAFLFDFHPSWMFLCGASLVVTATVMYSSP 395          
BLAST of mRNA_H-elongata_contig83894.16001.1 vs. uniprot
Match: B7FYG7_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FYG7_PHATC)

HSP 1 Score: 240 bits (612), Expect = 7.420e-71
Identity = 129/249 (51.81%), Postives = 177/249 (71.08%), Query Frame = 2
Query:  848 PREVAKLTVPALLYTLQNNLLFIALQHLDPATYSVCYQTKILTTALFSVLLLGKRLSFVKWSSLVLLMVGVALAELP---KETTKQEIVEPEEVFKQFP--------MLGFWCVMAAACTSGFAGVYFEMLLKGSKTSLWVRNIQMGLPSVVLAIAGVFLKDWKHVTSNGFFHGYSGVVLGVVVLQAGGGLVVAVVVKYTDNIRKSFAAAVSIIISCIMSMFLFDFQPTLTFIIGAGCVCTSVFMYSRP 1561
            P E+ KLTVP+LLYT+QNNLL++AL +LD ATY VCYQ KILTTALFS LLL ++ S +KW SLV+L +GVA+ +L     + ++Q+     +               +G   V+ AACTSGF+GVYFE +LKGS+TSLW+RN+QMGL S+V+A   V++KD + + + GF+ GY+ +V  VV +QA GGL+VA VVKY DN+ K FA + SI++SCI+S FLFDF P+++F++GA  V T+  MYS P
Sbjct:   63 PLELLKLTVPSLLYTVQNNLLYLALTNLDAATYQVCYQLKILTTALFSALLLQRKFSTMKWLSLVVLTIGVAIVQLSGSGDQHSEQDSKAATDAVDDTNGTAAAHTRWVGLVAVLCAACTSGFSGVYFEKILKGSRTSLWIRNVQMGLSSIVIAYLTVYVKDAEAIRTQGFWGGYNTLVWTVVTVQAVGGLIVATVVKYADNVLKVFATSFSIVVSCIVSAFLFDFHPSVSFLVGASLVVTATVMYSSP 311          
BLAST of mRNA_H-elongata_contig83894.16001.1 vs. uniprot
Match: A0A6J8AU58_MYTCO (SLC35A1_2_3 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8AU58_MYTCO)

HSP 1 Score: 241 bits (615), Expect = 7.500e-71
Identity = 127/258 (49.22%), Postives = 180/258 (69.77%), Query Frame = 2
Query:  791 ESGGSRAFFKKLKLEVARKPREVAKLTVPALLYTLQNNLLFIALQHLDPATYSVCYQTKILTTALFSVLLLGKRLSFVKWSSLVLLMVGVALAELPKETTKQEIVEPEEVFKQFPMLGFWCVMAAACTSGFAGVYFEMLLKGSKTSLWVRNIQMGLPSVVLAIAGVFLKDWKHVTSNGFFHGYSGVVLGVVVLQAGGGLVVAVVVKYTDNIRKSFAAAVSIIISCIMSMFLFDFQPTLTFIIGAGCVCTSVFMYSRPP 1564
            + G  + F + L   + ++P +  K+++P+++Y LQNNLL++A+ +LD ATY V YQ KILTTA+FSV +L K++S ++W+SLV+L +GV++ +L    +KQ+     E   Q PMLGF CV+ + C SGFAGVYFE +LKG+K S+W+RN+Q+G   VV+ +  + + D   VT  GFFHGY  +V  V+ LQ+ GGL VAVVVKY DNI K FA + +II+SCI S++ FDFQ TL F +GA  V  SV+MYSR P
Sbjct:  106 QEGSVKKFVQHLVDNIIKQPMDCVKVSIPSIIYVLQNNLLYVAVSNLDAATYQVSYQLKILTTAVFSVFMLKKQISKLQWTSLVILFIGVSVVQLQPTESKQKAPPAVE---QNPMLGFICVVISCCMSGFAGVYFEKILKGTKGSVWLRNVQLGGLGVVIGLITMEINDGTKVTEKGFFHGYHSIVWFVIFLQSFGGLCVAVVVKYADNILKGFATSAAIILSCIASIYFFDFQLTLQFSLGASLVMYSVYMYSRYP 360          
BLAST of mRNA_H-elongata_contig83894.16001.1 vs. uniprot
Match: A0A7S4SDY4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SDY4_9STRA)

HSP 1 Score: 242 bits (617), Expect = 9.740e-71
Identity = 131/238 (55.04%), Postives = 166/238 (69.75%), Query Frame = 2
Query:  848 PREVAKLTVPALLYTLQNNLLFIALQHLDPATYSVCYQTKILTTALFSVLLLGKRLSFVKWSSLVLLMVGVALAELPKETTKQEIVEPEEVFKQFPMLGFWCVMAAACTSGFAGVYFEMLLKGSKTSLWVRNIQMGLPSVVLAIAGVFLKDWKHVTSNGFFHGYSGVVLGVVVLQAGGGLVVAVVVKYTDNIRKSFAAAVSIIISCIMSMFLFDFQPTLTFIIGAGCVCTSVFMYSRP 1561
            P EV KL VP+LLY +QNNLL+IAL +LD ATY VCYQ KILTTA+FS +LL +  S  KW SL++L  GVA+ +    + K    +      Q   +G   V+ AACTSGF+GVYFE +LKGSKTSLW+RNIQMG  S+ +++  VFL+D   V++ GFF GYS +V  VV +QA GGL+VAVVVKY DN+ K+FAA+ SII SCI+S  LFDFQP   F+ GA  V +S  +YS P
Sbjct:  143 PFEVLKLCVPSLLYAVQNNLLYIALTNLDAATYQVCYQLKILTTAIFSAILLKRTFSCTKWFSLIILTAGVAIVQTSGSSDKSSSSDANVSINQNRFVGTVAVLCAACTSGFSGVYFEKILKGSKTSLWIRNIQMGFSSIFISLIMVFLQDLAAVSTKGFFVGYSPLVWLVVTIQAAGGLIVAVVVKYADNVLKTFAASFSIIASCIVSSVLFDFQPNKMFLAGAALVVSSTVLYSWP 380          
BLAST of mRNA_H-elongata_contig83894.16001.1 vs. uniprot
Match: UPI0015ADE86E (UDP-N-acetylglucosamine transporter-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015ADE86E)

HSP 1 Score: 238 bits (607), Expect = 5.300e-70
Identity = 124/268 (46.27%), Postives = 185/268 (69.03%), Query Frame = 2
Query:  791 ESGGSRAFFKKLKLEVARKPREVAKLTVPALLYTLQNNLLFIALQHLDPATYSVCYQTKILTTALFSVLLLGKRLSFVKWSSLVLLMVGVALAELPKETTKQEIVEPEEVFKQFPMLGFWCVMAAACTSGFAGVYFEMLLKGSKTSLWVRNIQMGLPSVVLAIAGVFLKDWKHVTSNGFFHGYSGVVLGVVVLQAGGGLVVAVVVKYTDNIRKSFAAAVSIIISCIMSMFLFDFQPTLTFIIGAGCVCTSVFMYSRPPPSRGLPTFHK 1594
            + G  +     LK  V  +P +  K+ +P+L+YT+QNNLL++   HLD AT  V YQ KILTTALFSV++L +RLS  +W +L LL +GVAL +L + TT +          Q P++GF+ ++ A C SGFAGVYFE +LKGS+ ++W+RN+Q+ + S+ + +  V++ DW  V++ GFFHGY+ VV  V++LQA GGL+VAVVV+Y DNI K F+ +++I++SC++S+++F+FQ T  F+ GA  V  S F+YSR PPS  +P  +K
Sbjct:   85 DEGSIKKLLIALKKTVISQPLDTFKVAIPSLVYTVQNNLLYVGATHLDAATCQVTYQLKILTTALFSVVMLKRRLSMYQWIALFLLFIGVALVQLAQLTTAKT---SNSTHTQKPLVGFFAIVIACCLSGFAGVYFEKILKGSEITVWMRNVQLCVTSIPVGLFMVYVIDWNEVSTKGFFHGYNTVVWYVIMLQAFGGLIVAVVVRYADNILKGFSTSLAIVLSCVISVYVFNFQLTSKFVCGASLVICSTFLYSRYPPS--VPAVYK 347          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig83894.16001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJJ6_ECTSI4.990e-10564.47Solute carrier family 35 member 3A, partial n=1 Ta... [more]
A0A836C750_9STRA9.480e-8551.68Nucleotide-sugar transporter-domain-containing pro... [more]
A0A7S2U9J9_9STRA4.470e-7754.96Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2VC43_9STRA1.360e-7450.73Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A0L0FIU7_9EUKA4.770e-7250.78UDP-N-acetylglucosamine transporter (Fragment) n=1... [more]
A0A7S3L616_9STRA4.650e-7152.14Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
B7FYG7_PHATC7.420e-7151.81Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A6J8AU58_MYTCO7.500e-7149.22SLC35A1_2_3 n=1 Tax=Mytilus coruscus TaxID=42192 R... [more]
A0A7S4SDY4_9STRA9.740e-7155.04Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
UPI0015ADE86E5.300e-7046.27UDP-N-acetylglucosamine transporter-like n=1 Tax=S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig83894contigH-elongata_contig83894:1071..2769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score330.1
Seed ortholog evalue1.1e-87
Seed eggNOG ortholog2880.D7FJJ6
KEGG koko:K15272
KEGG TC2.A.7.12
EggNOG free text desc.pyrimidine nucleotide-sugar transmembrane transporter activity
EggNOG OGsCOG0697@1,KOG2234@2759
COG Functional cat.EG
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Exons1
Model size1699
Cds size894
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig83894.16001.1prot_H-elongata_contig83894.16001.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig83894 1831..2724 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931243.7847884-UTR-H-elongata_contig83894:1070..18301622931243.7847884-UTR-H-elongata_contig83894:1070..1830Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83894 1071..1830 +
1691679756.932174-UTR-H-elongata_contig83894:1070..18301691679756.932174-UTR-H-elongata_contig83894:1070..1830Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83894 1071..1830 +
1622931243.8271701-UTR-H-elongata_contig83894:2724..27691622931243.8271701-UTR-H-elongata_contig83894:2724..2769Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83894 2725..2769 +
1691679756.952578-UTR-H-elongata_contig83894:2724..27691691679756.952578-UTR-H-elongata_contig83894:2724..2769Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig83894 2725..2769 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931243.8074086-CDS-H-elongata_contig83894:1830..27241622931243.8074086-CDS-H-elongata_contig83894:1830..2724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83894 1831..2724 +
1691679756.9425287-CDS-H-elongata_contig83894:1830..27241691679756.9425287-CDS-H-elongata_contig83894:1830..2724Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig83894 1831..2724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig83894.16001.1

>prot_H-elongata_contig83894.16001.1 ID=prot_H-elongata_contig83894.16001.1|Name=mRNA_H-elongata_contig83894.16001.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=298bp
MYTTSLRPTQESGGSRAFFKKLKLEVARKPREVAKLTVPALLYTLQNNLL
FIALQHLDPATYSVCYQTKILTTALFSVLLLGKRLSFVKWSSLVLLMVGV
ALAELPKETTKQEIVEPEEVFKQFPMLGFWCVMAAACTSGFAGVYFEMLL
KGSKTSLWVRNIQMGLPSVVLAIAGVFLKDWKHVTSNGFFHGYSGVVLGV
VVLQAGGGLVVAVVVKYTDNIRKSFAAAVSIIISCIMSMFLFDFQPTLTF
IIGAGCVCTSVFMYSRPPPSRGLPTFHKAPHATSALDFDRRHGARRV*
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mRNA from alignment at H-elongata_contig83894:1071..2769+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig83894.16001.1 ID=mRNA_H-elongata_contig83894.16001.1|Name=mRNA_H-elongata_contig83894.16001.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1699bp|location=Sequence derived from alignment at H-elongata_contig83894:1071..2769+ (Himanthalia elongata Himel1 dioecious)
CTACTCGCTTATACTCTTGTGAGGAGCCTAGTACCAGAAGGGTTAATAGT TTAATAATTTGACGTTGGATCTCCCAGTAGCTCTAGAGTCAATTGCTGTA TTTCCTGAAAATAATGTCGAACATTTATCTTTCAAATCACATATATCTAT GGTCATAACATATAGCAGAGTAAGATCAACCGGATTTGGTTGCCTTCTGC TCTTTGTCAGCTGAACAGGGGAAAATAATTTTCCCCTGTCACCGTTTGCC CCTGATAGTTTGGTCTCGCGAGACGGGTTCAACAGTCCCGTCCCGCGTCA GCCTGCAGCAGAGTATGACATTAGACTGATGCCCGAAACTACTCATATTT GTCACTTTTGTGCCTTTCCGCGAAATTCCTGACATCCAAGCGTGTTGCCA GGAGGAAGCAGGTAGACACAGAAACCAAATTTCGGCTGGGTTTGGGGTCA AAACTTGGGTCTCTACCCGATTATTTTTTTTAAACCTTAACCGAGGTTGA ATTAGCTAATATAGTCATTCCAATAGGCTACCGTAGCGATGGCTATATAC TAACATCCTCGCTCTTTGTTCATAAAAATAGTAAAAACATATAAGACTCG ATCCCCTATACAGGCTTCCGTTAGCATGGATGGTCAAGAACGACGTTTCG CATTTTCATAAGAGAGCGTAGACTGGATTTTTACGACATGACGGCCTTGT GGTAGAAAGTGCTATTAATCCATTCGGCTGTCGTCGTAAAAGCTCTTCCT CTTGATCTGGATGTACACTACTTCCCTCCGCCCCACACAGGAATCTGGAG GATCCAGGGCGTTTTTCAAGAAATTGAAGTTGGAAGTAGCTCGGAAGCCG CGGGAGGTAGCAAAGCTGACGGTGCCAGCGCTGCTCTACACCCTTCAAAA CAACCTCCTGTTCATCGCGCTGCAGCATCTCGACCCGGCCACCTACAGCG TATGCTACCAAACAAAAATTCTCACCACGGCTCTTTTTTCGGTGCTTCTC TTGGGCAAACGGTTGAGCTTTGTCAAGTGGTCGTCATTGGTTTTGCTTAT GGTAGGCGTTGCCCTGGCGGAGTTGCCCAAAGAGACAACGAAGCAAGAGA TCGTCGAACCGGAGGAAGTTTTTAAGCAGTTCCCGATGCTCGGGTTTTGG TGTGTTATGGCGGCTGCCTGTACCTCTGGATTCGCCGGAGTGTACTTCGA GATGTTGTTAAAGGGCAGTAAGACTTCCCTCTGGGTCAGAAACATCCAGA TGGGTCTTCCCAGCGTCGTCCTGGCTATCGCGGGTGTCTTCTTGAAGGAT TGGAAGCACGTGACTTCGAATGGATTCTTCCATGGTTACAGCGGAGTTGT TTTAGGAGTCGTGGTTCTCCAGGCGGGAGGAGGCCTTGTGGTCGCTGTCG TTGTCAAATACACGGACAATATCCGGAAATCGTTCGCGGCAGCAGTGTCC ATAATTATTTCGTGCATCATGTCGATGTTCTTGTTCGACTTCCAACCGAC TCTGACGTTCATCATCGGTGCCGGCTGCGTTTGCACGTCGGTATTCATGT ACAGCAGGCCGCCGCCCAGTAGAGGGCTGCCAACCTTTCACAAGGCGCCG CACGCTACCTCTGCCTTAGACTTTGATCGCCGCCATGGCGCGAGACGGGT TTGACGGAATATAGGGGGTGGGGGGTAGTAGGGGGATGTTGTTGTTGGT
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Coding sequence (CDS) from alignment at H-elongata_contig83894:1071..2769+

>mRNA_H-elongata_contig83894.16001.1 ID=mRNA_H-elongata_contig83894.16001.1|Name=mRNA_H-elongata_contig83894.16001.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1788bp|location=Sequence derived from alignment at H-elongata_contig83894:1071..2769+ (Himanthalia elongata Himel1 dioecious)
ATGTACACTACTTCCCTCCGCCCCACACAGGAATCTGGAGGATCCAGGGC
GTTTTTCAAGAAATTGAAGTTGGAAGTAGCTCGGAAGCCGCGGGAGGTAG
CAAAGCTGACGGTGCCAGCGCTGCTCTACACCCTTCAAAACAACCTCCTG
TTCATCGCGCTGCAGCATCTCGACCCGGCCACCTACAGCGTATGCTACCA
AACAAAAATTCTCACCACGGCTCTTTTTTCGGTGCTTCTCTTGGGCAAAC
GGTTGAGCTTTGTCAAGTGGTCGTCATTGGTTTTGCTTATGGTAGGCGTT
GCCCTGGCGGAGTTGCCCAAAGAGACAACGAAGCAAGAGATCGTCGAACC
GGAGGAAGTTTTTAAGCAGTTCCCGATGCTCGGGTTTTGGTGTGTTATGG
CGGCTGCCTGTACCTCTGGATTCGCCGGAGTGTACTTCGAGATGTTGTTA
AAGGGCAGTAAGACTTCCCTCTGGGTCAGAAACATCCAGATGGGTCTTCC
CAGCGTCGTCCTGGCTATCGCGGGTGTCTTCTTGAAGGATTGGAAGCACG
TGACTTCGAATGGATTCTTCCATGGTTACAGCGGAGTTGTTTTAGGAGTC
GTGGTTCTCCAGGCGGGAGGAGGCCTTGTGGTCGCTGTCGTTGTCAAATA
CACGGACAATATCCGGAAATCGTTCGCGGCAGCAGTGTCCATAATTATTT
CGTGCATCATGTCGATGTTCTTGTTCGACTTCCAACCGACTCTGACGTTC
ATCATCGGTGCCGGCTGCGTTTGCACGTCGGTATTCATGTACAGCAGGCC
GCCGCCCAGTAGAGGGCTGCCAACCTTTCACAAGGCGCCGCACGCTACCT
CTGCCTTAGACTTTGATCGCCGCCATGGCGCGAGACGGGTTTGAATGTAC
ACTACTTCCCTCCGCCCCACACAGGAATCTGGAGGATCCAGGGCGTTTTT
CAAGAAATTGAAGTTGGAAGTAGCTCGGAAGCCGCGGGAGGTAGCAAAGC
TGACGGTGCCAGCGCTGCTCTACACCCTTCAAAACAACCTCCTGTTCATC
GCGCTGCAGCATCTCGACCCGGCCACCTACAGCGTATGCTACCAAACAAA
AATTCTCACCACGGCTCTTTTTTCGGTGCTTCTCTTGGGCAAACGGTTGA
GCTTTGTCAAGTGGTCGTCATTGGTTTTGCTTATGGTAGGCGTTGCCCTG
GCGGAGTTGCCCAAAGAGACAACGAAGCAAGAGATCGTCGAACCGGAGGA
AGTTTTTAAGCAGTTCCCGATGCTCGGGTTTTGGTGTGTTATGGCGGCTG
CCTGTACCTCTGGATTCGCCGGAGTGTACTTCGAGATGTTGTTAAAGGGC
AGTAAGACTTCCCTCTGGGTCAGAAACATCCAGATGGGTCTTCCCAGCGT
CGTCCTGGCTATCGCGGGTGTCTTCTTGAAGGATTGGAAGCACGTGACTT
CGAATGGATTCTTCCATGGTTACAGCGGAGTTGTTTTAGGAGTCGTGGTT
CTCCAGGCGGGAGGAGGCCTTGTGGTCGCTGTCGTTGTCAAATACACGGA
CAATATCCGGAAATCGTTCGCGGCAGCAGTGTCCATAATTATTTCGTGCA
TCATGTCGATGTTCTTGTTCGACTTCCAACCGACTCTGACGTTCATCATC
GGTGCCGGCTGCGTTTGCACGTCGGTATTCATGTACAGCAGGCCGCCGCC
CAGTAGAGGGCTGCCAACCTTTCACAAGGCGCCGCACGCTACCTCTGCCT
TAGACTTTGATCGCCGCCATGGCGCGAGACGGGTTTGA
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