mRNA_H-elongata_contig101861.160.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101861.160.1
Unique NamemRNA_H-elongata_contig101861.160.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig101861.160.1 vs. uniprot
Match: A0A6H5JV35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV35_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 4.070e-32
Identity = 76/121 (62.81%), Postives = 86/121 (71.07%), Query Frame = 1
Query:    1 SPPLPSLFINRHPSAMATSHHDERGAGFFAIGFARAGAEGDGG------------------------GVCAVVTTSGTSVANLLPAAAEADAAGLPMLMLTADRPPEERGCGSNQTIDQVR 291
            S PL ++ I RHPSA++ SHHDERGAGF+A+GFARAG  G GG                        G+CAVVT+SGT+VANLLPAAAEADAAGL ML+LTADRPPE RGCGSNQTIDQ R
Sbjct:  670 SAPL-AVAIARHPSAVSISHHDERGAGFYAVGFARAG-PGRGGRAHSXXXXXXXXXXXXXXXXXGALGICAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQAR 788          
BLAST of mRNA_H-elongata_contig101861.160.1 vs. uniprot
Match: D8LMF2_ECTSI (Similar to Isochorismate Synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF2_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 3.650e-31
Identity = 75/120 (62.50%), Postives = 85/120 (70.83%), Query Frame = 1
Query:    1 SPPLPSLFINRHPSAMATSHHDERGAGFFAIGFARAGAE----------------------GDGG-GVCAVVTTSGTSVANLLPAAAEADAAGLPMLMLTADRPPEERGCGSNQTIDQVR 291
            S PL ++ I RHPSA++ SHHDERGAGF+A+GFARAG                        G G  G+CAVVT+SGT+VANLLPAAAEADAAGL ML+LTADRPPE RGCGSNQTIDQ R
Sbjct:  903 SAPL-AVAIARHPSAVSISHHDERGAGFYAVGFARAGPGRGXXXXXXXXXXXXXXXXXXXVGSGALGMCAVVTSSGTAVANLLPAAAEADAAGLSMLLLTADRPPELRGCGSNQTIDQAR 1021          
BLAST of mRNA_H-elongata_contig101861.160.1 vs. uniprot
Match: A0A835Z971_9STRA (ADC synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z971_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.910e-21
Identity = 59/102 (57.84%), Postives = 67/102 (65.69%), Query Frame = 1
Query:    1 SPPLPSLFINRHPSA------MATSHHDERGAGFFAIGFARAGAEGDGGGVCAVVTTSGTSVANLLPAAAEADAAGLPMLMLTADRPPEERGCGSNQTIDQV 288
            S PL      R PSA      M   HHDERGA FFA+G+A+    G GG  CAVVTTSGT+VANLLP A EA   G  ML+LTADRPPE R  G++QT+DQV
Sbjct:  235 STPLTHAAAPRAPSAAXXXXAMPLVHHDERGAAFFALGYAK----GSGGRPCAVVTTSGTAVANLLPGAMEAGLGGHAMLLLTADRPPEARDVGADQTLDQV 332          
BLAST of mRNA_H-elongata_contig101861.160.1 vs. uniprot
Match: A0A4D9D2W1_9STRA (MR_MLE domain-containing protein n=6 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2W1_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.540e-21
Identity = 53/103 (51.46%), Postives = 66/103 (64.08%), Query Frame = 1
Query:   31 RHPSAMATSHHDERGAGFFAIGFARAGAEGDGGGVCAVVTTSGTSVANLLPAAAEADAAGLPMLMLTADRPPEERGCGSNQTIDQVRDGARGDGWVSGLPIPS 339
            RHP      HHDERGAGF+ +G+ARA      G   AV+ TSGT+VANLLPAA EA    +P+L+LTADRPPE+R CG+NQT+ Q         W   +P P+
Sbjct:  577 RHPDTTLMVHHDERGAGFYCLGYARAR-----GRPAAVIVTSGTAVANLLPAAVEAATDRVPLLLLTADRPPEQRDCGANQTVAQPDMFLHFARWTKDVPCPT 674          
BLAST of mRNA_H-elongata_contig101861.160.1 vs. uniprot
Match: MEND_CHLAA (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase n=3 Tax=Chloroflexi TaxID=200795 RepID=MEND_CHLAA)

HSP 1 Score: 96.7 bits (239), Expect = 5.800e-21
Identity = 60/116 (51.72%), Postives = 73/116 (62.93%), Query Frame = 1
Query:    1 SPPLPSLFINRHPSAMATSHHDERGAGFFAIGFARAGAEGDGGGVCAVVTTSGTSVANLLPAAAEADAAGLPMLMLTADRPPEERGCGSNQTIDQVRDGARGDGWVSGLPIPSLYL 348
            S PL +L + RHPS     H DER AGFFA+G ARA      G   AV+ TSGT+VANLLPA  EA+ A +P+++LTADRPPE R  G+ QTIDQ+    R   W   LP P + L
Sbjct:   37 STPL-ALAVARHPSLRVWMHLDERSAGFFALGMARAR-----GMPAAVLCTSGTAVANLLPAVVEANLARVPLVILTADRPPELRDNGAPQTIDQIGIFGRNVRWFVDLPTPDMAL 146          
BLAST of mRNA_H-elongata_contig101861.160.1 vs. uniprot
Match: UPI0004DFA02D (2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase n=2 Tax=unclassified Chloroflexus TaxID=2633855 RepID=UPI0004DFA02D)

HSP 1 Score: 96.3 bits (238), Expect = 7.920e-21
Identity = 59/116 (50.86%), Postives = 72/116 (62.07%), Query Frame = 1
Query:    1 SPPLPSLFINRHPSAMATSHHDERGAGFFAIGFARAGAEGDGGGVCAVVTTSGTSVANLLPAAAEADAAGLPMLMLTADRPPEERGCGSNQTIDQVRDGARGDGWVSGLPIPSLYL 348
            S PL +L + RHP+     H DER AGFFA+G ARA          AV+ TSGT+VANLLPA  EA  A +P+L+LTADRPPE R  G+ QTIDQ+    R   W   LP+P + L
Sbjct:   37 STPL-ALAVARHPALRVWMHLDERSAGFFALGIARARHR-----PAAVLCTSGTAVANLLPAVVEAHLARVPLLLLTADRPPELRDNGAPQTIDQIGIFGRNVRWFIDLPVPQMTL 146          
BLAST of mRNA_H-elongata_contig101861.160.1 vs. uniprot
Match: A0A2T2U9C8_9BACT (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase n=1 Tax=Bacteroidetes bacterium QS_8_64_10 TaxID=1919108 RepID=A0A2T2U9C8_9BACT)

HSP 1 Score: 96.3 bits (238), Expect = 7.960e-21
Identity = 59/110 (53.64%), Postives = 70/110 (63.64%), Query Frame = 1
Query:   19 LFINRHPSAMATSHHDERGAGFFAIGFARAGAEGDGGGVCAVVTTSGTSVANLLPAAAEADAAGLPMLMLTADRPPEERGCGSNQTIDQ---VRDGARGDGWVSGLPIPS 339
            L + RHP A A  H+DERG+ F A+G+ARA A+ DG    A +TTSGT+VAN LPA  EA    +PML+LT DRPPE R   SNQTIDQ     D AR   W   LP P+
Sbjct:   47 LAVARHPEAQAVVHYDERGSAFAALGYARATAD-DGSRPAAWITTSGTAVANGLPAVVEAGTDAVPMLLLTTDRPPERRDTASNQTIDQPDIFGDYAR---WQFDLPAPT 152          
BLAST of mRNA_H-elongata_contig101861.160.1 vs. uniprot
Match: MEND_SALRD (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase n=12 Tax=Salinibacter ruber TaxID=146919 RepID=MEND_SALRD)

HSP 1 Score: 95.5 bits (236), Expect = 1.480e-20
Identity = 61/113 (53.98%), Postives = 72/113 (63.72%), Query Frame = 1
Query:    1 SPPLPSLFINRHPSAMATSHHDERGAGFFAIGFARAGAEGDGGGVCAVVTTSGTSVANLLPAAAEADAAGLPMLMLTADRPPEERGCGSNQTIDQVRDGARGDGWVSGLPIPS 339
            S PL ++ I RHP A +  H DERGA F A+G  RA       G  A VTTSGT+VAN LPAA EA   G+PML+LTADRPPE R  G+NQTIDQV+       W + +P PS
Sbjct:   42 STPL-TVAIARHPEAESVLHVDERGAAFAALGVGRAAR-----GPAAWVTTSGTAVANGLPAAVEASVDGVPMLLLTADRPPELRDTGANQTIDQVKIFGDYVRWQADVPPPS 148          
BLAST of mRNA_H-elongata_contig101861.160.1 vs. uniprot
Match: A0A2H3P0E4_9BACT (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase n=1 Tax=Longimonas halophila TaxID=1469170 RepID=A0A2H3P0E4_9BACT)

HSP 1 Score: 94.4 bits (233), Expect = 3.760e-20
Identity = 55/105 (52.38%), Postives = 68/105 (64.76%), Query Frame = 1
Query:   25 INRHPSAMATSHHDERGAGFFAIGFARAGAEGDGGGVCAVVTTSGTSVANLLPAAAEADAAGLPMLMLTADRPPEERGCGSNQTIDQVRDGARGDGWVSGLPIPS 339
            + +HP A +  H DERG  F A+GFARA     G      +TTSGT+VAN +PA AEA   G+PML+LTADRPPE RG G+NQTIDQV+       W + +P PS
Sbjct:   50 VAQHPVAQSVLHVDERGGAFAALGFARATGHPAGW-----ITTSGTAVANGMPAVAEAGQEGIPMLLLTADRPPELRGTGANQTIDQVKLFGDHVRWSADVPPPS 149          
BLAST of mRNA_H-elongata_contig101861.160.1 vs. uniprot
Match: UPI000AC99170 (2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase n=1 Tax=Rhodothermus marinus TaxID=29549 RepID=UPI000AC99170)

HSP 1 Score: 90.1 bits (222), Expect = 4.390e-20
Identity = 53/108 (49.07%), Postives = 65/108 (60.19%), Query Frame = 1
Query:   25 INRHPSAMATSHHDERGAGFFAIGFARAGAEGDGGGVCAVVTTSGTSVANLLPAAAEADAAGLPMLMLTADRPPEERGCGSNQTIDQVRDGARGDGWVSGLPIPSLYL 348
            + RHP A A  H+DERG  F A+G+ RA      G   A +TTSGT+VAN  PA  EA    +P+L+LTADRPPE R  G+NQTIDQV+       W   LP+P   L
Sbjct:   42 VARHPEARAIVHYDERGTAFLALGYGRAT-----GRPAAWITTSGTAVANGFPAVVEASQDEIPLLLLTADRPPELRDTGANQTIDQVKLFGSYVRWQFELPVPDPDL 144          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101861.160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV35_9PHAE4.070e-3262.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMF2_ECTSI3.650e-3162.50Similar to Isochorismate Synthase n=1 Tax=Ectocarp... [more]
A0A835Z971_9STRA1.910e-2157.84ADC synthase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A4D9D2W1_9STRA2.540e-2151.46MR_MLE domain-containing protein n=6 Tax=Monodopsi... [more]
MEND_CHLAA5.800e-2151.722-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1... [more]
UPI0004DFA02D7.920e-2150.862-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-... [more]
A0A2T2U9C8_9BACT7.960e-2153.642-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1... [more]
MEND_SALRD1.480e-2053.982-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1... [more]
A0A2H3P0E4_9BACT3.760e-2052.382-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1... [more]
UPI000AC991704.390e-2049.072-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101861contigH-elongata_contig101861:1856..2206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.1
Seed ortholog evalue5.4e-27
Seed eggNOG ortholog2880.D8LMF2
KEGG rclassRC00588,RC01053,RC02148,RC02186,RC02475
KEGG koko:K02552,ko:K14759
KEGG ReactionR01717,R04031,R08165,R08166
KEGG Pathwayko00130,ko01053,ko01100,ko01110,ko01130,map00130,map01053,map01100,map01110,map01130
KEGG ModuleM00116
EggNOG free text desc.anthranilate synthase activity
EggNOG OGsCOG0147@1,COG0596@1,KOG1223@2759,KOG2382@2759
EC2.2.1.9,4.2.1.113,4.2.99.20,5.4.4.2
COG Functional cat.EH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size351
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929558.1097894-CDS-H-elongata_contig101861:1855..22061622929558.1097894-CDS-H-elongata_contig101861:1855..2206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101861 1856..2206 +
1691679069.4767542-CDS-H-elongata_contig101861:1855..22061691679069.4767542-CDS-H-elongata_contig101861:1855..2206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101861 1856..2206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101861.160.1prot_H-elongata_contig101861.160.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101861 1856..2206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101861.160.1

>prot_H-elongata_contig101861.160.1 ID=prot_H-elongata_contig101861.160.1|Name=mRNA_H-elongata_contig101861.160.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
SPPLPSLFINRHPSAMATSHHDERGAGFFAIGFARAGAEGDGGGVCAVVT
TSGTSVANLLPAAAEADAAGLPMLMLTADRPPEERGCGSNQTIDQVRDGA
RGDGWVSGLPIPSLYL*
back to top

mRNA from alignment at H-elongata_contig101861:1856..2206+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101861.160.1 ID=mRNA_H-elongata_contig101861.160.1|Name=mRNA_H-elongata_contig101861.160.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=351bp|location=Sequence derived from alignment at H-elongata_contig101861:1856..2206+ (Himanthalia elongata Himel1 dioecious)
TCCCCTCCCCTCCCCTCCCTTTTTATCAATAGGCACCCGTCGGCGATGGC GACCTCCCACCACGACGAGCGAGGCGCGGGTTTCTTCGCGATTGGCTTTG CTCGAGCGGGGGCAGAAGGGGATGGGGGCGGTGTGTGCGCGGTCGTGACG ACTTCAGGAACGTCGGTCGCGAATCTGTTGCCCGCAGCCGCTGAGGCAGA CGCGGCTGGGCTCCCGATGCTGATGCTTACCGCGGACAGGCCACCGGAGG AACGGGGCTGCGGCAGCAATCAGACCATCGATCAGGTTAGGGACGGGGCC AGAGGGGATGGTTGGGTTAGCGGTTTACCGATCCCGTCACTGTACCTATA G
back to top

Coding sequence (CDS) from alignment at H-elongata_contig101861:1856..2206+

>mRNA_H-elongata_contig101861.160.1 ID=mRNA_H-elongata_contig101861.160.1|Name=mRNA_H-elongata_contig101861.160.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig101861:1856..2206+ (Himanthalia elongata Himel1 dioecious)
TCCCCTCCCCTCCCCTCCCTTTTTATCAATAGGCACCCGTCGGCGATGGC
GACCTCCCACCACGACGAGCGAGGCGCGGGTTTCTTCGCGATTGGCTTTG
CTCGAGCGGGGGCAGAAGGGGATGGGGGCGGTGTGTGCGCGGTCGTGACG
ACTTCAGGAACGTCGGTCGCGAATCTGTTGCCCGCAGCCGCTGAGGCAGA
CGCGGCTGGGCTCCCGATGCTGATGCTTACCGCGGACAGGCCACCGGAGG
AACGGGGCTGCGGCAGCAATCAGACCATCGATCAGGTTAGGGACGGGGCC
AGAGGGGATGGTTGGGTTAGCGGTTTACCGATCCCGTCACTGTACCTATA
GTCCCCTCCCCTCCCCTCCCTTTTTATCAATAGGCACCCGTCGGCGATGG
CGACCTCCCACCACGACGAGCGAGGCGCGGGTTTCTTCGCGATTGGCTTT
GCTCGAGCGGGGGCAGAAGGGGATGGGGGCGGTGTGTGCGCGGTCGTGAC
GACTTCAGGAACGTCGGTCGCGAATCTGTTGCCCGCAGCCGCTGAGGCAG
ACGCGGCTGGGCTCCCGATGCTGATGCTTACCGCGGACAGGCCACCGGAG
GAACGGGGCTGCGGCAGCAATCAGACCATCGATCAGGTTAGGGACGGGGC
CAGAGGGGATGGTTGGGTTAGCGGTTTACCGATCCCGTCACTGTACCTAT
AG
back to top